Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0 00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq13279 127 3e-24 seq521 125 9e-24 seq9289 116 5e-21 seq549 105 8e-18 seq12321 96.9 4e-15 seq9582 84.2 3e-11 >seq13279 Length=5599 Score = 127 bits (140), Expect = 3e-24 Identities = 302/451 (67%), Gaps = 4/451 (1%) Strand=Plus/Minus Query 11450 CGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCC 11509 || ||||||||||| || | || | |||| ||||| ||||| | | ||| || || Sbjct 917 CGGTCAAAACGACCTGGTCTCAGCAAGGCGGAGTCAAGAATATCAGCTCTATTGGTTGCA 858 Query 11510 GCAATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTA 11569 |||| || | || ||||| | | ||||| ||||||||||| || | | |||||| Sbjct 857 GCAACCACAATAACACCAGTGTTACCCTCAAACCCATCCATCTCAGTCAAGAGCTGATTA 798 Query 11570 ATTGTTTGTTCTCTCTCATCATTTGCT-GGCATACCACCAGCACTGCGTTGCTTGCCCAC 11628 | || || |||||||||||||| || | | | |||| | | ||| | || || Sbjct 797 AGCGTCTGCTCTCTCTCATCATTCCCTCCACCGATC-CCAGTCCCTCTCTGCCTACCAAC 739 Query 11629 CGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAG 11688 ||||||||||| || | |||||||| || || ||| || || ||| || || Sbjct 738 AGCATCAATCTCGTCCACAAAGACAATGCAAGGAGCATTCTCCTTAGCCTTTTTGAAAAG 679 Query 11689 ATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAGCA 11748 ||| || ||||| ||||| ||||| ||||||||||| || || | | ||||| | Sbjct 678 ATCACGGACCCTCGAAGCACCAACACCCACAAACATCTCAACGAACTCAGAACCAGAG-A 620 Query 11749 CTG-GATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCG 11807 || | ||| || ||| | |||||| || ||||| || | || || || || | Sbjct 619 TTGAAAAGAAAGGCACACCAGCTTCACCAGCAATGGCCTTTGCTAACAGAGTTTTACCAG 560 Query 11808 TACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACCACTTCCAAAATATC 11867 | || || ||| |||| ||| | ||| |||||| |||||| || | | Sbjct 559 TGCCAGGAGGACCAACGAGGAGGACACCTTTCGGGATCCGAGCACCAACCGCAGTGAACC 500 Query 11868 TCTCGGGTTGCTTGAGAAAATCCACAATCTC 11898 |||| || | ||||||||| ||||| | ||| Sbjct 499 TCTCAGGCTTCTTGAGAAACTCCACCACCTC 469 >seq521 Length=33513 Score = 125 bits (138), Expect = 9e-24 Identities = 299/446 (67%), Gaps = 6/446 (1%) Strand=Plus/Minus Query 11450 CGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCC 11509 || |||||||| || || | ||| | |||| ||||| ||||| | | || || || Sbjct 24617 CGGTCAAAACGGCCTGGTCTAAGCAAGGCGGAGTCAAGAATATCTGCTCTGTTGGTTGCA 24558 Query 11510 GCAATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTA 11569 |||| || | | ||||| | | ||||| ||||||||||| || | | || ||| Sbjct 24557 GCAACTACGATCACACCAGTGTTACCTTCAAAACCATCCATCTCCGTCAAGAGCTGGTTA 24498 Query 11570 ATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCA--CCAGCACTGCGTTGCTTGCCCA 11627 | || ||||||||||| ||||| || || | | |||| | | ||| | || | Sbjct 24497 AGCGTCTGTTCTCTCTCGTCATTCCCTC-CAC-CGATTCCAGTCCCTCTCTGCCTACCGA 24440 Query 11628 CCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGA 11687 | || ||||||||||||| |||||||| || || ||| || ||| ||| || | Sbjct 24439 CAGCGTCAATCTCATCAACAAAGACAATGCAGGGAGCATTCTCCTTGGCCTTTTTGAAAA 24380 Query 11688 GATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAGC 11747 |||| || ||||| ||||| ||||| || |||||||| ||||| | | ||||| Sbjct 24379 GATCACGGACCCTCGAAGCACCAACACCGACGAACATCTCAACAAACTCAGAACCAGAG- 24321 Query 11748 ACTG-GATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCC 11806 | || | || || ||| | |||||| || ||||| || | ||| || ||||| Sbjct 24320 ATTGAAAAAAAAGGCACACCAGCTTCACCGGCAATGGCCTTTGCCAAGAGTGTTTTTCCA 24261 Query 11807 GTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACCACTTCCAAAATAT 11866 ||||| || ||| |||| ||| | ||| || ||| | || ||| || | Sbjct 24260 GTACCGGGAGGACCAACGAGGAGGACACCTTTCGGAATCCTCGCGCCAACAGCAGTGAAC 24201 Query 11867 CTCTCGGGTTGCTTGAGAAAATCCAC 11892 ||||| || | ||||||||| ||||| Sbjct 24200 CTCTCAGGCTTCTTGAGAAACTCCAC 24175 >seq9289 Length=7890 Score = 116 bits (128), Expect = 5e-21 Identities = 229/338 (68%), Gaps = 12/338 (4%) Strand=Plus/Plus Query 11483 TCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAG 11542 ||||| || || | | ||| || || |||| ||| | || ||||| | | ||||| Sbjct 2910 TCAAGAATGTCTGCTCTATTGGTTGCAGCAACAACGATGATACCAGTGTTACCTTCAAAC 2969 Query 11543 CCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATA 11602 ||||||||||| || || || || || | || ||||| ||||||||||| | | Sbjct 2970 CCATCCATCTCAGTTAGCAACTGGTTCAAAGTCTGTTCCCTCTCATCATTACC------A 3023 Query 11603 CCACC-AGCACTG-----CGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATA 11656 ||||| | ||| | |||| | || || |||||||||||||||| |||||||| Sbjct 3024 CCACCGATTCCTGTCCCTCTTTGCCTACCAACAGCATCAATCTCATCAACAAAGACAATG 3083 Query 11657 CATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCA 11716 || || || || || | | || ||||| |||||||| |||||| ||||| Sbjct 3084 CAAGGAGCGTTCTCCTTAGCCTTCTTGAAAAGATCACGAACCCTCGAGGCACCAACACCG 3143 Query 11717 ACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCC 11776 ||||||||||| || || | | | ||| || ||| || ||| | |||||| Sbjct 3144 ACAAACATCTCAACGAACTCCGACCCGGAGATGGAGAAGAACGGCACACCAGCTTCACCA 3203 Query 11777 GCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814 ||||| ||| || || || ||||| || ||||| || Sbjct 3204 GCGATAGCTTTCGCCAGAAGCGTCTTCCCAGTACCGGG 3241 >seq549 Length=32968 Score = 105 bits (116), Expect = 8e-18 Identities = 142/197 (72%), Gaps = 3/197 (2%) Strand=Plus/Minus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 |||||| || || |||| || || || || || |||||| ||||| |||||||| || Sbjct 20325 GTGGAGGCCTTCGTCTCTCGAGATCAGCTCGTTGGAGAAGGTGAGACCCGGCATGAGCCC 20266 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 |||||||||| ||| | || | |||||| || ||||||||||| || ||||| || Sbjct 20265 ACGCTTCTTCAGCCAGAAGATCGAGCAGAAGCTGCCCGAGAAGAAGATCCCTTCCACGCA 20206 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAACCATTTCATTGC 122849 || ||||| | | | |||||||||| ||| | |||| | ||| |||| || Sbjct 20205 AGCGAACGCCACGATCCTCTCGGCGAAGGCCTGAGGC---CCATCGATCCACTTCAAGGC 20149 Query 122850 CCATTTCGCCTTCTTCT 122866 ||||| ||||| |||| Sbjct 20148 CCATTGGGCCTTTTTCT 20132 >seq12321 Length=6064 Score = 96.9 bits (106), Expect = 4e-15 Identities = 155/222 (70%), Gaps = 3/222 (1%) Strand=Plus/Minus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 ||| || ||||| |||| || || || || || |||||| ||||| |||||||| || Sbjct 1373 GTGAAGCCCCTCGTCTCTCGAGATGAGCTCGTTGGAGAAGGTCAGACCAGGCATGAGCCC 1314 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 |||||||| | ||| | || | |||||| |||||||||||||| || || || || Sbjct 1313 ACGCTTCTTGAGCCAGAAGATCGAGCAGAAGCTTCCGGAGAAGAAGATCCCTTCGACGCA 1254 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAACCATTTCATTGC 122849 || || || | | | || ||||| | |||| | | || | ||| ||||| || Sbjct 1253 GGCGAAGGCGACGATCCTCTCCGCGAAAGTCTGAGA---TCCGTCGATCCACTTCATGGC 1197 Query 122850 CCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 122891 ||||| ||||||||| | | || || | || | |||||| Sbjct 1196 CCATTGGGCCTTCTTCGCGACGCAGGGGATGGTCTCGATGGC 1155 >seq9582 Length=7681 Score = 84.2 bits (92), Expect = 3e-11 Identities = 140/200 (70%), Gaps = 12/200 (6%) Strand=Plus/Plus Query 11540 AAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGC 11599 || ||||||||||| || | | |||||||| || || || ||||||||||| || | Sbjct 7100 AACCCATCCATCTCAGTCAAGAGCTGATTAATCGTCTGCTCCCTCTCATCATTCCCT--C 7157 Query 11600 ATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATAC 11657 | ||| ||||| | | ||| | ||||| |||||||||||||| || || ||||| | Sbjct 7158 CTCCCATCCCAGCTCCTCTCTGCCTCCCCACAGCATCAATCTCATCGATAAAAACAATGC 7217 Query 11658 ATGG----TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACA 11713 | || ||| ||| || | || || | ||| | |||||| ||||||||| Sbjct 7218 AAGGCGCCTTGGCCTTC----GCCTTCTCGAACAAATCCCTAACCCTAGACGCACCCACA 7273 Query 11714 CCAACAAACATCTCCACAAA 11733 || || || | ||| ||||| Sbjct 7274 CCGACGAAAAGCTCAACAAA 7293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627523827907200