Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0
00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq13279 127 3e-24
seq521 125 9e-24
seq9289 116 5e-21
seq549 105 8e-18
seq12321 96.9 4e-15
seq9582 84.2 3e-11
>seq13279
Length=5599
Score = 127 bits (140), Expect = 3e-24
Identities = 302/451 (67%), Gaps = 4/451 (1%)
Strand=Plus/Minus
Query 11450 CGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCC 11509
|| ||||||||||| || | || | |||| ||||| ||||| | | ||| || ||
Sbjct 917 CGGTCAAAACGACCTGGTCTCAGCAAGGCGGAGTCAAGAATATCAGCTCTATTGGTTGCA 858
Query 11510 GCAATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTA 11569
|||| || | || ||||| | | ||||| ||||||||||| || | | ||||||
Sbjct 857 GCAACCACAATAACACCAGTGTTACCCTCAAACCCATCCATCTCAGTCAAGAGCTGATTA 798
Query 11570 ATTGTTTGTTCTCTCTCATCATTTGCT-GGCATACCACCAGCACTGCGTTGCTTGCCCAC 11628
| || || |||||||||||||| || | | | |||| | | ||| | || ||
Sbjct 797 AGCGTCTGCTCTCTCTCATCATTCCCTCCACCGATC-CCAGTCCCTCTCTGCCTACCAAC 739
Query 11629 CGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAG 11688
||||||||||| || | |||||||| || || ||| || || ||| || ||
Sbjct 738 AGCATCAATCTCGTCCACAAAGACAATGCAAGGAGCATTCTCCTTAGCCTTTTTGAAAAG 679
Query 11689 ATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAGCA 11748
||| || ||||| ||||| ||||| ||||||||||| || || | | ||||| |
Sbjct 678 ATCACGGACCCTCGAAGCACCAACACCCACAAACATCTCAACGAACTCAGAACCAGAG-A 620
Query 11749 CTG-GATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCG 11807
|| | ||| || ||| | |||||| || ||||| || | || || || || |
Sbjct 619 TTGAAAAGAAAGGCACACCAGCTTCACCAGCAATGGCCTTTGCTAACAGAGTTTTACCAG 560
Query 11808 TACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACCACTTCCAAAATATC 11867
| || || ||| |||| ||| | ||| |||||| |||||| || | |
Sbjct 559 TGCCAGGAGGACCAACGAGGAGGACACCTTTCGGGATCCGAGCACCAACCGCAGTGAACC 500
Query 11868 TCTCGGGTTGCTTGAGAAAATCCACAATCTC 11898
|||| || | ||||||||| ||||| | |||
Sbjct 499 TCTCAGGCTTCTTGAGAAACTCCACCACCTC 469
>seq521
Length=33513
Score = 125 bits (138), Expect = 9e-24
Identities = 299/446 (67%), Gaps = 6/446 (1%)
Strand=Plus/Minus
Query 11450 CGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCC 11509
|| |||||||| || || | ||| | |||| ||||| ||||| | | || || ||
Sbjct 24617 CGGTCAAAACGGCCTGGTCTAAGCAAGGCGGAGTCAAGAATATCTGCTCTGTTGGTTGCA 24558
Query 11510 GCAATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTA 11569
|||| || | | ||||| | | ||||| ||||||||||| || | | || |||
Sbjct 24557 GCAACTACGATCACACCAGTGTTACCTTCAAAACCATCCATCTCCGTCAAGAGCTGGTTA 24498
Query 11570 ATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCA--CCAGCACTGCGTTGCTTGCCCA 11627
| || ||||||||||| ||||| || || | | |||| | | ||| | || |
Sbjct 24497 AGCGTCTGTTCTCTCTCGTCATTCCCTC-CAC-CGATTCCAGTCCCTCTCTGCCTACCGA 24440
Query 11628 CCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGA 11687
| || ||||||||||||| |||||||| || || ||| || ||| ||| || |
Sbjct 24439 CAGCGTCAATCTCATCAACAAAGACAATGCAGGGAGCATTCTCCTTGGCCTTTTTGAAAA 24380
Query 11688 GATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAGC 11747
|||| || ||||| ||||| ||||| || |||||||| ||||| | | |||||
Sbjct 24379 GATCACGGACCCTCGAAGCACCAACACCGACGAACATCTCAACAAACTCAGAACCAGAG- 24321
Query 11748 ACTG-GATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCC 11806
| || | || || ||| | |||||| || ||||| || | ||| || |||||
Sbjct 24320 ATTGAAAAAAAAGGCACACCAGCTTCACCGGCAATGGCCTTTGCCAAGAGTGTTTTTCCA 24261
Query 11807 GTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACCACTTCCAAAATAT 11866
||||| || ||| |||| ||| | ||| || ||| | || ||| || |
Sbjct 24260 GTACCGGGAGGACCAACGAGGAGGACACCTTTCGGAATCCTCGCGCCAACAGCAGTGAAC 24201
Query 11867 CTCTCGGGTTGCTTGAGAAAATCCAC 11892
||||| || | ||||||||| |||||
Sbjct 24200 CTCTCAGGCTTCTTGAGAAACTCCAC 24175
>seq9289
Length=7890
Score = 116 bits (128), Expect = 5e-21
Identities = 229/338 (68%), Gaps = 12/338 (4%)
Strand=Plus/Plus
Query 11483 TCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAG 11542
||||| || || | | ||| || || |||| ||| | || ||||| | | |||||
Sbjct 2910 TCAAGAATGTCTGCTCTATTGGTTGCAGCAACAACGATGATACCAGTGTTACCTTCAAAC 2969
Query 11543 CCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATA 11602
||||||||||| || || || || || | || ||||| ||||||||||| | |
Sbjct 2970 CCATCCATCTCAGTTAGCAACTGGTTCAAAGTCTGTTCCCTCTCATCATTACC------A 3023
Query 11603 CCACC-AGCACTG-----CGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATA 11656
||||| | ||| | |||| | || || |||||||||||||||| ||||||||
Sbjct 3024 CCACCGATTCCTGTCCCTCTTTGCCTACCAACAGCATCAATCTCATCAACAAAGACAATG 3083
Query 11657 CATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCA 11716
|| || || || || | | || ||||| |||||||| |||||| |||||
Sbjct 3084 CAAGGAGCGTTCTCCTTAGCCTTCTTGAAAAGATCACGAACCCTCGAGGCACCAACACCG 3143
Query 11717 ACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCC 11776
||||||||||| || || | | | ||| || ||| || ||| | ||||||
Sbjct 3144 ACAAACATCTCAACGAACTCCGACCCGGAGATGGAGAAGAACGGCACACCAGCTTCACCA 3203
Query 11777 GCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814
||||| ||| || || || ||||| || ||||| ||
Sbjct 3204 GCGATAGCTTTCGCCAGAAGCGTCTTCCCAGTACCGGG 3241
>seq549
Length=32968
Score = 105 bits (116), Expect = 8e-18
Identities = 142/197 (72%), Gaps = 3/197 (2%)
Strand=Plus/Minus
Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729
|||||| || || |||| || || || || || |||||| ||||| |||||||| ||
Sbjct 20325 GTGGAGGCCTTCGTCTCTCGAGATCAGCTCGTTGGAGAAGGTGAGACCCGGCATGAGCCC 20266
Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789
|||||||||| ||| | || | |||||| || ||||||||||| || ||||| ||
Sbjct 20265 ACGCTTCTTCAGCCAGAAGATCGAGCAGAAGCTGCCCGAGAAGAAGATCCCTTCCACGCA 20206
Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAACCATTTCATTGC 122849
|| ||||| | | | |||||||||| ||| | |||| | ||| |||| ||
Sbjct 20205 AGCGAACGCCACGATCCTCTCGGCGAAGGCCTGAGGC---CCATCGATCCACTTCAAGGC 20149
Query 122850 CCATTTCGCCTTCTTCT 122866
||||| ||||| ||||
Sbjct 20148 CCATTGGGCCTTTTTCT 20132
>seq12321
Length=6064
Score = 96.9 bits (106), Expect = 4e-15
Identities = 155/222 (70%), Gaps = 3/222 (1%)
Strand=Plus/Minus
Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729
||| || ||||| |||| || || || || || |||||| ||||| |||||||| ||
Sbjct 1373 GTGAAGCCCCTCGTCTCTCGAGATGAGCTCGTTGGAGAAGGTCAGACCAGGCATGAGCCC 1314
Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789
|||||||| | ||| | || | |||||| |||||||||||||| || || || ||
Sbjct 1313 ACGCTTCTTGAGCCAGAAGATCGAGCAGAAGCTTCCGGAGAAGAAGATCCCTTCGACGCA 1254
Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAACCATTTCATTGC 122849
|| || || | | | || ||||| | |||| | | || | ||| ||||| ||
Sbjct 1253 GGCGAAGGCGACGATCCTCTCCGCGAAAGTCTGAGA---TCCGTCGATCCACTTCATGGC 1197
Query 122850 CCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 122891
||||| ||||||||| | | || || | || | ||||||
Sbjct 1196 CCATTGGGCCTTCTTCGCGACGCAGGGGATGGTCTCGATGGC 1155
>seq9582
Length=7681
Score = 84.2 bits (92), Expect = 3e-11
Identities = 140/200 (70%), Gaps = 12/200 (6%)
Strand=Plus/Plus
Query 11540 AAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGC 11599
|| ||||||||||| || | | |||||||| || || || ||||||||||| || |
Sbjct 7100 AACCCATCCATCTCAGTCAAGAGCTGATTAATCGTCTGCTCCCTCTCATCATTCCCT--C 7157
Query 11600 ATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATAC 11657
| ||| ||||| | | ||| | ||||| |||||||||||||| || || ||||| |
Sbjct 7158 CTCCCATCCCAGCTCCTCTCTGCCTCCCCACAGCATCAATCTCATCGATAAAAACAATGC 7217
Query 11658 ATGG----TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACA 11713
| || ||| ||| || | || || | ||| | |||||| |||||||||
Sbjct 7218 AAGGCGCCTTGGCCTTC----GCCTTCTCGAACAAATCCCTAACCCTAGACGCACCCACA 7273
Query 11714 CCAACAAACATCTCCACAAA 11733
|| || || | ||| |||||
Sbjct 7274 CCGACGAAAAGCTCAACAAA 7293
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 627523827907200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |