Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0
00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq549 143 3e-29
seq12321 129 7e-25
seq13279 89.7 6e-13
seq521 84.2 3e-11
>seq549
Length=32968
Score = 143 bits (158), Expect = 3e-29
Identities = 311/458 (68%), Gaps = 13/458 (3%)
Strand=Plus/Minus
Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACA 129906
||||| ||| ||||||| |||| | |||| ||| |||||| || | | ||
Sbjct 20505 ATCCGCCACGAACTCAATATACTGACTCATCAACTCCCGGTTCATCCCCACCAACGCGCA 20446
Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966
||||||||||| | | ||| || |||| || ||||| || || | |||||| |
Sbjct 20445 CGGGAGCGCGTCGCACACAAACTCCCTCTCGATCTCCACCGCGTCGCACACGATCGACCT 20386
Query 129967 AATGGTCTCCGTGCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTC---CACGGCAAACTC 130023
| | |||| | | || || | | | ||| || || || |||| | || ||
Sbjct 20385 CACGCGCTCC-TCCGAGAGCT-TCGTCCTAAGGAGGGAGTAGATCAGGCACG-CGAAGTC 20329
Query 130024 CTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAG 130083
|||||| || ||||| | ||||| || || || |||||| ||||| ||||||||
Sbjct 20328 GCAGTGGAGGCCTTCGTCTCTCGAGATCAGCTCGTTGGAGAAGGTGAGACCCGGCATGAG 20269
Query 130084 ACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 130143
|| |||||||||| |||||| |||| || || ||| |||||||||||||| |||||
Sbjct 20268 CCCACGCTTCTTCAGCCAGAAGATCGAGCAGAAGCTGCCCGAGAAGAAGATCCCTTCCAC 20209
Query 130144 ACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCACTTCAT 130203
|| |||||||| | || | ||| || |||| | | | ||| | ||||||||
Sbjct 20208 GCAAGCGAACGCCACGATCCTCTCGGCGAAGGCCTGAGGC---CCATCGATCCACTTCAA 20152
Query 130204 CGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTT 130263
||||| || |||||||||| | || |||| |||| |||||| ||||| | |
Sbjct 20151 GGCCCATTGGGCCTTTTTCTTTACGCAAGGGATCGTCTCGATCGCGCGGAAGAGATGGTC 20092
Query 130264 CTTTTC--TGATGGATCTTTGATGTACTTATCTATGAG 130299
| | || || || ||||||||||| | |||| |||
Sbjct 20091 CCTCTCCTTGTTG--TCTTTGATGTAAGTGTCTAAGAG 20056
>seq12321
Length=6064
Score = 129 bits (142), Expect = 7e-25
Identities = 188/263 (71%), Gaps = 7/263 (3%)
Strand=Plus/Minus
Query 130027 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 130086
||| || |||||||| | |||||||| || || |||||| |||||| |||||||| ||
Sbjct 1373 GTGAAGCCCCTCGTCTCTCGAGATGAGCTCGTTGGAGAAGGTCAGACCAGGCATGAGCCC 1314
Query 130087 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 130146
|||||||| | |||||| |||| || || || |||||||||||||| || || ||
Sbjct 1313 ACGCTTCTTGAGCCAGAAGATCGAGCAGAAGCTTCCGGAGAAGAAGATCCCTTCGACGCA 1254
Query 130147 CGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGC 130206
||||| || | || | ||| || || | | || | || | ||||||||| ||
Sbjct 1253 GGCGAAGGCGACGATCCTCTCCGCGAAAGTCTGAGA---TCCGTCGATCCACTTCATGGC 1197
Query 130207 CCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTT 130266
||| || ||||| ||| ||| || |||| ||||| ||| || ||||| | | | |
Sbjct 1196 CCATTGGGCCTTCTTCGCGACGCAGGGGATGGTCTCGATGGCCCGGAAGAGGTGGTCCCT 1137
Query 130267 TTC--TGATGGATCTTTGATGTA 130287
|| || || |||||||||||
Sbjct 1136 CTCCTTGTTG--TCTTTGATGTA 1116
>seq13279
Length=5599
Score = 89.7 bits (98), Expect = 6e-13
Identities = 270/412 (66%), Gaps = 14/412 (3%)
Strand=Plus/Minus
Query 14063 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 14122
|| ||||| |||||||| | || | |||| |||||| |||||| | || || ||
Sbjct 917 CGGTCAAAACGACCTGGTCTCAGCAAGGCGGAGTCAAGAATATCAGCTCTATTGGTTGCA 858
Query 14123 GCGATGACAACGATGCCCGTCTCGTTA---TCAAAGCCATCCATCTCAGTCAAGAGTTGA 14179
|| | |||| | || || |||| ||||| |||||||||||||||||||| |||
Sbjct 857 GCAACCACAATAACACCAGT---GTTACCCTCAAACCCATCCATCTCAGTCAAGAGCTGA 801
Query 14180 TTGATGGTTTGTTCGCGTTCATCATTC---GCAGGCATACCACCCGCACTGCGTTGCTTA 14236
|| | || || || | ||||||||| || || ||| | | || ||| ||
Sbjct 800 TTAAGCGTCTGCTCTCTCTCATCATTCCCTCCACCGATCCCAGTCCCTCT---CTGCCTA 744
Query 14237 CCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGCAACTTCA 14296
|| || || ||||| || || | || || || || || ||| || || ||
Sbjct 743 CCAACAGCATCAATCTCGTCCACAAAGACAATGCAAGGAGCATTCTCCTTAGCCTTTTTG 684
Query 14297 AAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCG 14356
|| | ||| || || ||| ||||| ||||||||||||||||| || || | | |
Sbjct 683 AAAAGATCACGGACCCTCGAAGCACCAACACCCACAAACATCTCAACGAACTCAGAACCA 624
Query 14357 GAACATTG-GATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTT 14415
| | |||| | ||| || || || |||||| || ||||| || | || || ||
Sbjct 623 G-AGATTGAAAAGAAAGGCACACCAGCTTCACCAGCAATGGCCTTTGCTAACAGAGTTTT 565
Query 14416 CCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACCA 14467
|| || || || || |||| ||| |||| ||||||| ||||||
Sbjct 564 ACCAGTGCCAGGAGGACCAACGAGGAGGACACCTTTCGGGATCCGAGCACCA 513
>seq521
Length=33513
Score = 84.2 bits (92), Expect = 3e-11
Identities = 194/290 (67%), Gaps = 12/290 (4%)
Strand=Plus/Minus
Query 14063 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 14122
|| ||||| || ||||| | || | |||| |||||| ||||| | ||| || ||
Sbjct 24617 CGGTCAAAACGGCCTGGTCTAAGCAAGGCGGAGTCAAGAATATCTGCTCTGTTGGTTGCA 24558
Query 14123 GCGATGACAACGATGCCCGTCTCGTTA---TCAAAGCCATCCATCTCAGTCAAGAGTTGA 14179
|| | || | | || || |||| ||||| ||||||||||| |||||||| ||
Sbjct 24557 GCAACTACGATCACACCAGT---GTTACCTTCAAAACCATCCATCTCCGTCAAGAGCTGG 24501
Query 14180 TTGATGGTTTGTTCGCGTTCATCATTC---GCAGGCATACCACCCGCACTGCGTTGCTTA 14236
|| | || ||||| | || |||||| || || ||| | | || ||| ||
Sbjct 24500 TTAAGCGTCTGTTCTCTCTCGTCATTCCCTCCACCGATTCCAGTCCCTCT---CTGCCTA 24444
Query 14237 CCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGCAACTTCA 14296
||||| |||||||| ||||| | || || || || || ||| || ||| ||
Sbjct 24443 CCGACAGCGTCAATCTCATCAACAAAGACAATGCAGGGAGCATTCTCCTTGGCCTTTTTG 24384
Query 14297 AAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAA 14346
|| | ||| || || ||| ||||| ||||| || |||||||| |||||
Sbjct 24383 AAAAGATCACGGACCCTCGAAGCACCAACACCGACGAACATCTCAACAAA 24334
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 617934793157920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |