Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0 00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq549 143 3e-29 seq12321 129 7e-25 seq13279 89.7 6e-13 seq521 84.2 3e-11 >seq549 Length=32968 Score = 143 bits (158), Expect = 3e-29 Identities = 311/458 (68%), Gaps = 13/458 (3%) Strand=Plus/Minus Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACA 129906 ||||| ||| ||||||| |||| | |||| ||| |||||| || | | || Sbjct 20505 ATCCGCCACGAACTCAATATACTGACTCATCAACTCCCGGTTCATCCCCACCAACGCGCA 20446 Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966 ||||||||||| | | ||| || |||| || ||||| || || | |||||| | Sbjct 20445 CGGGAGCGCGTCGCACACAAACTCCCTCTCGATCTCCACCGCGTCGCACACGATCGACCT 20386 Query 129967 AATGGTCTCCGTGCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTC---CACGGCAAACTC 130023 | | |||| | | || || | | | ||| || || || |||| | || || Sbjct 20385 CACGCGCTCC-TCCGAGAGCT-TCGTCCTAAGGAGGGAGTAGATCAGGCACG-CGAAGTC 20329 Query 130024 CTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAG 130083 |||||| || ||||| | ||||| || || || |||||| ||||| |||||||| Sbjct 20328 GCAGTGGAGGCCTTCGTCTCTCGAGATCAGCTCGTTGGAGAAGGTGAGACCCGGCATGAG 20269 Query 130084 ACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 130143 || |||||||||| |||||| |||| || || ||| |||||||||||||| ||||| Sbjct 20268 CCCACGCTTCTTCAGCCAGAAGATCGAGCAGAAGCTGCCCGAGAAGAAGATCCCTTCCAC 20209 Query 130144 ACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCACTTCAT 130203 || |||||||| | || | ||| || |||| | | | ||| | |||||||| Sbjct 20208 GCAAGCGAACGCCACGATCCTCTCGGCGAAGGCCTGAGGC---CCATCGATCCACTTCAA 20152 Query 130204 CGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTT 130263 ||||| || |||||||||| | || |||| |||| |||||| ||||| | | Sbjct 20151 GGCCCATTGGGCCTTTTTCTTTACGCAAGGGATCGTCTCGATCGCGCGGAAGAGATGGTC 20092 Query 130264 CTTTTC--TGATGGATCTTTGATGTACTTATCTATGAG 130299 | | || || || ||||||||||| | |||| ||| Sbjct 20091 CCTCTCCTTGTTG--TCTTTGATGTAAGTGTCTAAGAG 20056 >seq12321 Length=6064 Score = 129 bits (142), Expect = 7e-25 Identities = 188/263 (71%), Gaps = 7/263 (3%) Strand=Plus/Minus Query 130027 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 130086 ||| || |||||||| | |||||||| || || |||||| |||||| |||||||| || Sbjct 1373 GTGAAGCCCCTCGTCTCTCGAGATGAGCTCGTTGGAGAAGGTCAGACCAGGCATGAGCCC 1314 Query 130087 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 130146 |||||||| | |||||| |||| || || || |||||||||||||| || || || Sbjct 1313 ACGCTTCTTGAGCCAGAAGATCGAGCAGAAGCTTCCGGAGAAGAAGATCCCTTCGACGCA 1254 Query 130147 CGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGC 130206 ||||| || | || | ||| || || | | || | || | ||||||||| || Sbjct 1253 GGCGAAGGCGACGATCCTCTCCGCGAAAGTCTGAGA---TCCGTCGATCCACTTCATGGC 1197 Query 130207 CCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTT 130266 ||| || ||||| ||| ||| || |||| ||||| ||| || ||||| | | | | Sbjct 1196 CCATTGGGCCTTCTTCGCGACGCAGGGGATGGTCTCGATGGCCCGGAAGAGGTGGTCCCT 1137 Query 130267 TTC--TGATGGATCTTTGATGTA 130287 || || || ||||||||||| Sbjct 1136 CTCCTTGTTG--TCTTTGATGTA 1116 >seq13279 Length=5599 Score = 89.7 bits (98), Expect = 6e-13 Identities = 270/412 (66%), Gaps = 14/412 (3%) Strand=Plus/Minus Query 14063 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 14122 || ||||| |||||||| | || | |||| |||||| |||||| | || || || Sbjct 917 CGGTCAAAACGACCTGGTCTCAGCAAGGCGGAGTCAAGAATATCAGCTCTATTGGTTGCA 858 Query 14123 GCGATGACAACGATGCCCGTCTCGTTA---TCAAAGCCATCCATCTCAGTCAAGAGTTGA 14179 || | |||| | || || |||| ||||| |||||||||||||||||||| ||| Sbjct 857 GCAACCACAATAACACCAGT---GTTACCCTCAAACCCATCCATCTCAGTCAAGAGCTGA 801 Query 14180 TTGATGGTTTGTTCGCGTTCATCATTC---GCAGGCATACCACCCGCACTGCGTTGCTTA 14236 || | || || || | ||||||||| || || ||| | | || ||| || Sbjct 800 TTAAGCGTCTGCTCTCTCTCATCATTCCCTCCACCGATCCCAGTCCCTCT---CTGCCTA 744 Query 14237 CCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGCAACTTCA 14296 || || || ||||| || || | || || || || || ||| || || || Sbjct 743 CCAACAGCATCAATCTCGTCCACAAAGACAATGCAAGGAGCATTCTCCTTAGCCTTTTTG 684 Query 14297 AAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCG 14356 || | ||| || || ||| ||||| ||||||||||||||||| || || | | | Sbjct 683 AAAAGATCACGGACCCTCGAAGCACCAACACCCACAAACATCTCAACGAACTCAGAACCA 624 Query 14357 GAACATTG-GATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTT 14415 | | |||| | ||| || || || |||||| || ||||| || | || || || Sbjct 623 G-AGATTGAAAAGAAAGGCACACCAGCTTCACCAGCAATGGCCTTTGCTAACAGAGTTTT 565 Query 14416 CCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACCA 14467 || || || || || |||| ||| |||| ||||||| |||||| Sbjct 564 ACCAGTGCCAGGAGGACCAACGAGGAGGACACCTTTCGGGATCCGAGCACCA 513 >seq521 Length=33513 Score = 84.2 bits (92), Expect = 3e-11 Identities = 194/290 (67%), Gaps = 12/290 (4%) Strand=Plus/Minus Query 14063 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 14122 || ||||| || ||||| | || | |||| |||||| ||||| | ||| || || Sbjct 24617 CGGTCAAAACGGCCTGGTCTAAGCAAGGCGGAGTCAAGAATATCTGCTCTGTTGGTTGCA 24558 Query 14123 GCGATGACAACGATGCCCGTCTCGTTA---TCAAAGCCATCCATCTCAGTCAAGAGTTGA 14179 || | || | | || || |||| ||||| ||||||||||| |||||||| || Sbjct 24557 GCAACTACGATCACACCAGT---GTTACCTTCAAAACCATCCATCTCCGTCAAGAGCTGG 24501 Query 14180 TTGATGGTTTGTTCGCGTTCATCATTC---GCAGGCATACCACCCGCACTGCGTTGCTTA 14236 || | || ||||| | || |||||| || || ||| | | || ||| || Sbjct 24500 TTAAGCGTCTGTTCTCTCTCGTCATTCCCTCCACCGATTCCAGTCCCTCT---CTGCCTA 24444 Query 14237 CCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGCAACTTCA 14296 ||||| |||||||| ||||| | || || || || || ||| || ||| || Sbjct 24443 CCGACAGCGTCAATCTCATCAACAAAGACAATGCAGGGAGCATTCTCCTTGGCCTTTTTG 24384 Query 14297 AAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAA 14346 || | ||| || || ||| ||||| ||||| || |||||||| ||||| Sbjct 24383 AAAAGATCACGGACCCTCGAAGCACCAACACCGACGAACATCTCAACAAA 24334 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 617934793157920