Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0 00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq549 170 2e-37 seq12321 159 4e-34 seq20848 84.2 2e-11 >seq549 Length=32968 Score = 170 bits (188), Expect = 2e-37 Identities = 380/558 (68%), Gaps = 23/558 (4%) Strand=Plus/Plus Query 59574 TACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGGTCCGTCGAGGAG 59633 |||||| | | |||| |||| |||||||| | || |||||| ||| |||||| Sbjct 19777 TACCCGCAGATCTGGGAGATGTACAAGAAAGCCGAAGCCTCCTTCTGGACCGCCGAGGAA 19836 Query 59634 ATTGACCTCGCCGGAGACCTGAAGGATTGGGAC---AAGCTCAATTACGACGAGCAGCAT 59690 | |||||| || |||| || ||||| || ||||| ||| ||||| || Sbjct 19837 GTCGACCTCTCCCAAGACACCCGCGACTGGGAGCAAAACCTCAACGACGGCGAGCGACAC 19896 Query 59691 TTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTGATGGAAAATATA 59750 ||| |||| ||||| ||||||||||| || || || || || | || ||| | Sbjct 19897 TTCGTCAAACACGTCCTCGCCTTCTTCGCCGCCTCCGACGGGATCGTCCTCGAGAATCTC 19956 Query 59751 GACATGAACTTTTCCAAG---GATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTAT 59807 | | | |||| | | || |||||| | |||||||||| | ||||||| | Sbjct 19957 GCCTCC--CGTTTC-ATGTCCGACGTCCAGGTCTCCGAGGCCCGCGCCTTCTACGGCTTC 20013 Query 59808 CAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGT 59866 ||| ||| | |||| ||||||||||||| |||| ||| | | || | | | Sbjct 20014 CAGATCGCG-ATCGAGAACATCCACTCCGAGATGTACAGTCTCCTCTTAGACACTTACAT 20072 Query 59867 CAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACG-TCCCCCGCAGTTA 59925 ||| || | |||| || ||| ||||| || || |||||| |||| || || | Sbjct 20073 CAAAGACAACAAGGAGAGGGACCATCTCTTCCGCGCGATCGAGACGATCCCTTGC-GTAA 20131 Query 59926 AACAAAAAGCAGAATGGGCCATGCAGTGGAT-GAGTCCTGGAGCATCA----TTTGCACA 59980 | |||| || |||||||| || ||||||| || ||| || ||| || || | Sbjct 20132 AGAAAAAGGCCCAATGGGCCTTGAAGTGGATCGA----TGG-GCCTCAGGCCTTCGCCGA 20186 Query 59981 ACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTAT 60040 | || | || || || ||||||||||| ||||||||||| ||| ||||| | || Sbjct 20187 GAGGATCGTGGCGTTCGCTTGCGTGGAAGGGATCTTCTTCTCGGGCAGCTTCTGCTCGAT 20246 Query 60041 TTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTC 60100 |||||||| || |||||||| ||||||||||| || | ||||||||||||||||| || Sbjct 20247 CTTCTGGCTGAAGAAGCGTGGGCTCATGCCGGGTCTCACCTTCTCCAACGAGCTGATCTC 20306 Query 60101 CCGGGACGAGGGCCTCCA 60118 | ||||| |||||||| Sbjct 20307 GAGAGACGAAGGCCTCCA 20324 >seq12321 Length=6064 Score = 159 bits (176), Expect = 4e-34 Identities = 541/822 (66%), Gaps = 32/822 (4%) Strand=Plus/Plus Query 59613 TCATTCTGGTCCGTCGAGGAGATTGACCTCGCCGGAGACCTGAAGGATTGGGACAAGCTC 59672 || |||||| ||| |||||| | |||||| |||| ||| || ||||| || ||| Sbjct 867 TCCTTCTGGACCGCCGAGGAAGTCGACCTCTCCGGCGACACACGCGACTGGGAGAATCTC 926 Query 59673 AATTACGACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGA 59732 || ||| ||||| || |||||||| ||||||||||||||||| || || || Sbjct 927 AACGACGGCGAGCGCCACTTCATCAAACACGTCCTGGCCTTCTTCGCCGCCTCCGACGGG 986 Query 59733 ATTGTGATGGAAAATATAGACAT---GAACTTTTCCAAGGATGTCCAGATTGCCGAGGCC 59789 || || | || ||| | | | | | | ||| || |||||| | ||||||| Sbjct 987 ATCGTCCTCGAGAATCTCGCCTCCCGGTTCATGTCC---GACGTCCAGGTCTCCGAGGCG 1043 Query 59790 CGGTCGTTCTACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCT 59848 || | ||||||| | ||| ||| | ||| |||||||| |||| ||| || Sbjct 1044 CGTGCCTTCTACGGCTTCCAGATCGCG-ATTGAGAACATCCACTCAGAGATGTATAGTCT 1102 Query 59849 CATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGA 59908 | || |||| | | |||| || | |||| || || ||||| ||||| || Sbjct 1103 CCTGCTCGACACCTACATCAAAGACAACAAGGAGAGGGACCACCTCTTCCGGGCCATCGA 1162 Query 59909 GACG-TCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGATGAGTCCTGGAG 59967 ||| ||||| || || | || || ||||||||||| ||||||| | | ||| Sbjct 1163 GACCATCCCCTGC-GTCGCGAAGAAGGCCCAATGGGCCATGAAGTGGATC-GAC--GGAT 1218 Query 59968 CATCA----TTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCT 60023 | ||| || || | | || | || || || ||||| ||||| ||||||||||| Sbjct 1219 C-TCAGACTTTCGCGGAGAGGATCGTCGCCTTCGCCTGCGTCGAAGGGATCTTCTTCTCC 1277 Query 60024 GGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTC 60083 || ||||| | || ||||||||||| |||||||| |||||||| || |||| ||| Sbjct 1278 GGAAGCTTCTGCTCGATCTTCTGGCTCAAGAAGCGTGGGCTCATGCCTGGTCTGACCTTC 1337 Query 60084 TCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTGAC-GCTCTA 60142 ||||||||||| || || | |||||||| || || || || || || | | |||| Sbjct 1338 TCCAACGAGCTCATCTCGAGAGACGAGGGGCTTCACTGCGATTTCGC-CTGCCTGATCTA 1396 Query 60143 TTCACACCTATTG-GAAAAATGCCCTTCCAAGGATATTCACAAGATTGTTCAGTGGGC-- 60199 | | | ||||| | | | || | | |||| ||| | | || ||| || Sbjct 1397 TAC---CTTATTGAGGACGAAGCTC-CCGGAGGAGCGCGTGAAG-TCGATC-GTGTGCGA 1450 Query 60200 --TTGTGAAG-TGGAGAGCGAGTTCATCACAGAAGCGCTTCCATGCAAACTCATAGGTAT 60256 ||| || | ||||| ||||| | || |||||||| ||| | | || || Sbjct 1451 CGCGGTGGAGATCGAGAGGGAGTTTGTGTGCGACGCGCTTCCGTGCGCGTTGGTGGGGAT 1510 Query 60257 GGACGCTGGAGAAATGACGCAGTACATTCAGTTTGTCGCGGACCGCCTCATGGCCCAGTT 60316 | | || |||| ||||| || ||||||| ||||| | || ||| | | | Sbjct 1511 GAATCGTGATCTGATGAGTCAGTATATCGAGTTTGTGGCGGATAGGCTTTTGGGCGCGCT 1570 Query 60317 TGGAGAAGGACCAATTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTT 60376 ||| | || | ||||| ||| || || || || ||||||||| |||||| | Sbjct 1571 TGGGTACGGGAAGGTGTACGGTGTGGCGAATCCGTTTGATTGGATGGAGTTGATCTCGCT 1630 Query 60377 GGAAGGGAAGACCAACTTCTTTGAGAAGCGGGTCGGGGATTA 60418 | |||||||||||||||||||||||| |||| || ||||| Sbjct 1631 TCAGGGGAAGACCAACTTCTTTGAGAAGAGGGTTGGTGATTA 1672 >seq20848 Length=3109 Score = 84.2 bits (92), Expect = 2e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 79057 GATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATTTCTGTGCAC 79116 ||||| || |||||||| || || || || || | |||||||||||| ||||| Sbjct 1411 GATGCAAGATTGCACACAGCAGTTTCTGTTGGACTTGTGTACTCGATGATTTCAGTGCAT 1470 Query 79117 AAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCC 79176 |||||||| ||||| ||||| || | || | ||||||||| ||| |||||| | |||| Sbjct 1471 AAATTAGAAGACTTTATGGTACCCAGATTTTGCTGGTTGCTTTTCCTGTTACATGAGTCC 1530 Query 79177 T 79177 | Sbjct 1531 T 1531 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548080961158080