Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0
00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters
Query= NC_028108.1
Length=171454
Score E
Sequences producing significant alignments: (Bits) Value
seq549 170 2e-37
seq12321 159 4e-34
seq20848 84.2 2e-11
>seq549
Length=32968
Score = 170 bits (188), Expect = 2e-37
Identities = 380/558 (68%), Gaps = 23/558 (4%)
Strand=Plus/Plus
Query 59574 TACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGGTCCGTCGAGGAG 59633
|||||| | | |||| |||| |||||||| | || |||||| ||| ||||||
Sbjct 19777 TACCCGCAGATCTGGGAGATGTACAAGAAAGCCGAAGCCTCCTTCTGGACCGCCGAGGAA 19836
Query 59634 ATTGACCTCGCCGGAGACCTGAAGGATTGGGAC---AAGCTCAATTACGACGAGCAGCAT 59690
| |||||| || |||| || ||||| || ||||| ||| ||||| ||
Sbjct 19837 GTCGACCTCTCCCAAGACACCCGCGACTGGGAGCAAAACCTCAACGACGGCGAGCGACAC 19896
Query 59691 TTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTGATGGAAAATATA 59750
||| |||| ||||| ||||||||||| || || || || || | || ||| |
Sbjct 19897 TTCGTCAAACACGTCCTCGCCTTCTTCGCCGCCTCCGACGGGATCGTCCTCGAGAATCTC 19956
Query 59751 GACATGAACTTTTCCAAG---GATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTAT 59807
| | | |||| | | || |||||| | |||||||||| | ||||||| |
Sbjct 19957 GCCTCC--CGTTTC-ATGTCCGACGTCCAGGTCTCCGAGGCCCGCGCCTTCTACGGCTTC 20013
Query 59808 CAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGT 59866
||| ||| | |||| ||||||||||||| |||| ||| | | || | | |
Sbjct 20014 CAGATCGCG-ATCGAGAACATCCACTCCGAGATGTACAGTCTCCTCTTAGACACTTACAT 20072
Query 59867 CAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACG-TCCCCCGCAGTTA 59925
||| || | |||| || ||| ||||| || || |||||| |||| || || |
Sbjct 20073 CAAAGACAACAAGGAGAGGGACCATCTCTTCCGCGCGATCGAGACGATCCCTTGC-GTAA 20131
Query 59926 AACAAAAAGCAGAATGGGCCATGCAGTGGAT-GAGTCCTGGAGCATCA----TTTGCACA 59980
| |||| || |||||||| || ||||||| || ||| || ||| || || |
Sbjct 20132 AGAAAAAGGCCCAATGGGCCTTGAAGTGGATCGA----TGG-GCCTCAGGCCTTCGCCGA 20186
Query 59981 ACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTAT 60040
| || | || || || ||||||||||| ||||||||||| ||| ||||| | ||
Sbjct 20187 GAGGATCGTGGCGTTCGCTTGCGTGGAAGGGATCTTCTTCTCGGGCAGCTTCTGCTCGAT 20246
Query 60041 TTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTC 60100
|||||||| || |||||||| ||||||||||| || | ||||||||||||||||| ||
Sbjct 20247 CTTCTGGCTGAAGAAGCGTGGGCTCATGCCGGGTCTCACCTTCTCCAACGAGCTGATCTC 20306
Query 60101 CCGGGACGAGGGCCTCCA 60118
| ||||| ||||||||
Sbjct 20307 GAGAGACGAAGGCCTCCA 20324
>seq12321
Length=6064
Score = 159 bits (176), Expect = 4e-34
Identities = 541/822 (66%), Gaps = 32/822 (4%)
Strand=Plus/Plus
Query 59613 TCATTCTGGTCCGTCGAGGAGATTGACCTCGCCGGAGACCTGAAGGATTGGGACAAGCTC 59672
|| |||||| ||| |||||| | |||||| |||| ||| || ||||| || |||
Sbjct 867 TCCTTCTGGACCGCCGAGGAAGTCGACCTCTCCGGCGACACACGCGACTGGGAGAATCTC 926
Query 59673 AATTACGACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGA 59732
|| ||| ||||| || |||||||| ||||||||||||||||| || || ||
Sbjct 927 AACGACGGCGAGCGCCACTTCATCAAACACGTCCTGGCCTTCTTCGCCGCCTCCGACGGG 986
Query 59733 ATTGTGATGGAAAATATAGACAT---GAACTTTTCCAAGGATGTCCAGATTGCCGAGGCC 59789
|| || | || ||| | | | | | | ||| || |||||| | |||||||
Sbjct 987 ATCGTCCTCGAGAATCTCGCCTCCCGGTTCATGTCC---GACGTCCAGGTCTCCGAGGCG 1043
Query 59790 CGGTCGTTCTACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCT 59848
|| | ||||||| | ||| ||| | ||| |||||||| |||| ||| ||
Sbjct 1044 CGTGCCTTCTACGGCTTCCAGATCGCG-ATTGAGAACATCCACTCAGAGATGTATAGTCT 1102
Query 59849 CATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGA 59908
| || |||| | | |||| || | |||| || || ||||| ||||| ||
Sbjct 1103 CCTGCTCGACACCTACATCAAAGACAACAAGGAGAGGGACCACCTCTTCCGGGCCATCGA 1162
Query 59909 GACG-TCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGATGAGTCCTGGAG 59967
||| ||||| || || | || || ||||||||||| ||||||| | | |||
Sbjct 1163 GACCATCCCCTGC-GTCGCGAAGAAGGCCCAATGGGCCATGAAGTGGATC-GAC--GGAT 1218
Query 59968 CATCA----TTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCT 60023
| ||| || || | | || | || || || ||||| ||||| |||||||||||
Sbjct 1219 C-TCAGACTTTCGCGGAGAGGATCGTCGCCTTCGCCTGCGTCGAAGGGATCTTCTTCTCC 1277
Query 60024 GGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTC 60083
|| ||||| | || ||||||||||| |||||||| |||||||| || |||| |||
Sbjct 1278 GGAAGCTTCTGCTCGATCTTCTGGCTCAAGAAGCGTGGGCTCATGCCTGGTCTGACCTTC 1337
Query 60084 TCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTGAC-GCTCTA 60142
||||||||||| || || | |||||||| || || || || || || | | ||||
Sbjct 1338 TCCAACGAGCTCATCTCGAGAGACGAGGGGCTTCACTGCGATTTCGC-CTGCCTGATCTA 1396
Query 60143 TTCACACCTATTG-GAAAAATGCCCTTCCAAGGATATTCACAAGATTGTTCAGTGGGC-- 60199
| | | ||||| | | | || | | |||| ||| | | || ||| ||
Sbjct 1397 TAC---CTTATTGAGGACGAAGCTC-CCGGAGGAGCGCGTGAAG-TCGATC-GTGTGCGA 1450
Query 60200 --TTGTGAAG-TGGAGAGCGAGTTCATCACAGAAGCGCTTCCATGCAAACTCATAGGTAT 60256
||| || | ||||| ||||| | || |||||||| ||| | | || ||
Sbjct 1451 CGCGGTGGAGATCGAGAGGGAGTTTGTGTGCGACGCGCTTCCGTGCGCGTTGGTGGGGAT 1510
Query 60257 GGACGCTGGAGAAATGACGCAGTACATTCAGTTTGTCGCGGACCGCCTCATGGCCCAGTT 60316
| | || |||| ||||| || ||||||| ||||| | || ||| | | |
Sbjct 1511 GAATCGTGATCTGATGAGTCAGTATATCGAGTTTGTGGCGGATAGGCTTTTGGGCGCGCT 1570
Query 60317 TGGAGAAGGACCAATTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTT 60376
||| | || | ||||| ||| || || || || ||||||||| |||||| |
Sbjct 1571 TGGGTACGGGAAGGTGTACGGTGTGGCGAATCCGTTTGATTGGATGGAGTTGATCTCGCT 1630
Query 60377 GGAAGGGAAGACCAACTTCTTTGAGAAGCGGGTCGGGGATTA 60418
| |||||||||||||||||||||||| |||| || |||||
Sbjct 1631 TCAGGGGAAGACCAACTTCTTTGAGAAGAGGGTTGGTGATTA 1672
>seq20848
Length=3109
Score = 84.2 bits (92), Expect = 2e-11
Identities = 91/121 (75%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 79057 GATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATTTCTGTGCAC 79116
||||| || |||||||| || || || || || | |||||||||||| |||||
Sbjct 1411 GATGCAAGATTGCACACAGCAGTTTCTGTTGGACTTGTGTACTCGATGATTTCAGTGCAT 1470
Query 79117 AAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCC 79176
|||||||| ||||| ||||| || | || | ||||||||| ||| |||||| | ||||
Sbjct 1471 AAATTAGAAGACTTTATGGTACCCAGATTTTGCTGGTTGCTTTTCCTGTTACATGAGTCC 1530
Query 79177 T 79177
|
Sbjct 1531 T 1531
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 548080961158080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |