Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0 00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq12321 122 1e-22 seq5609 89.7 6e-13 seq4686 89.7 6e-13 seq748 89.7 6e-13 seq16286 87.8 2e-12 seq15348 86.0 7e-12 seq15037 86.0 7e-12 seq14803 86.0 7e-12 seq14661 86.0 7e-12 seq13946 86.0 7e-12 seq12434 86.0 7e-12 seq11981 86.0 7e-12 seq8800 86.0 7e-12 seq6280 86.0 7e-12 seq5586 86.0 7e-12 seq4242 86.0 7e-12 seq1431 86.0 7e-12 >seq12321 Length=6064 Score = 122 bits (134), Expect = 1e-22 Identities = 508/779 (65%), Gaps = 36/779 (5%) Strand=Plus/Minus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 |||||||| |||| ||| ||||| |||||||||||||| | | |||||| ||||||| Sbjct 1672 TAATCACCAACCCTCTTCTCAAAGAAGTTGGTCTTCCCCTGAAGCGAGATCAACTCCATC 1613 Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTCTC---CCCAAACTGTGCCATGAGG 74579 || || || || ||| ||||||| | |||| | ||||| | ||| || Sbjct 1612 CAATCAAACGGATTCGCCACACCGTACAC---CTTCCCGTACCCAAGCGCGCCCAAAAGC 1556 Query 74580 CGATCCGCCACAAATTGAATGTACTGCGTCATTTC-TCCCGCATCCATGCCGATGAGTTT 74638 | |||||||||||| | || ||||| |||| || || || ||| || | | Sbjct 1555 CTATCCGCCACAAACTCGATATACTGACTCATCAGATCACG-ATTCATCCCCACCAACGC 1497 Query 74639 GCACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTGGACA--ATC 74696 |||||| || || ||| | |||||| ||||| | ||| | | | | | ||| ||| Sbjct 1496 GCACGGAAGCGCGTCGCACACAAACTCCCTCTCGATCTCC--ACCGCGTCGCACACGATC 1439 Query 74697 TTGTGAATGTCTTTGGAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGCGTCACG---GCA 74753 | | | | ||| ||| ||||| | || ||| || ||| | || Sbjct 1438 GACTTCACGCGCTCCTCCGGGAGCTTCGTCCTCAA-TAAG-GTATAGA-TCAGGCAGGCG 1382 Query 74754 AACTCC---TGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCA 74810 || || ||| || || || ||||| || | || || || || | || ||| Sbjct 1381 AAATCGCAGTGAAGC---CCCTCGTCTCTCGAGATGAGCTCGTTGGAGAAGGTCAGACCA 1325 Query 74811 GGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATG 74870 ||||| || ||||||||||| | ||| ||||| | |||||| || ||||||||| Sbjct 1324 GGCATGAGCCCACGCTTCTTGAGCCAGAAGATCGAGCAGAAGCTTCCGGAGAAGAAGATC 1265 Query 74871 CCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGG-TGC-ATCGGAAGTCATCC 74928 |||||||| || || |||||||| | | | |||||| | || ||| | | |||| Sbjct 1264 CCTTCGACGCAGGCGAAGGCGACGATCCTCTCCGCGAAAGTCTGAGATCCGTCG--ATCC 1207 Query 74929 AAGTCTGAGCCCATTCAGCTTT--TCGTTTGACCGCAGGG-ACAGTATCGATCGCTTGGA 74985 | || ||||||| || || ||| ||| |||||| | || ||||| || ||| Sbjct 1206 ACTTCATGGCCCATTGGGCCTTCTTCGC--GAC-GCAGGGGATGGTCTCGATGGCCCGGA 1150 Query 74986 AGAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCT 75045 ||||| || |||| | | || |||| | |||| | || || ||| ||| Sbjct 1149 AGAGGTGGTCCCTCTCCTTGTTGTCTTTGATGTAGGTGTCGAGCAGGAGACTATACATCT 1090 Query 75046 CCGAATGAATCGACTCGTTGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGCAATC 75104 | || || || ||| | ||| |||| | ||||||| | |||||||| | | | Sbjct 1089 CTGAGTGGATGTTCTCAATCG-CGATCTGGAAGCCGTAGAAGGCACGCGCCTCGGAGACC 1031 Query 75105 TGTACATCCTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCG 75164 || || || || | ||| |||||| | |||||| ||||| ||||||||| Sbjct 1030 TGGACGTCGGACATGAACCGGGAGGCGAGATTCTCGAGGACGATCCCGTCGGAGGCGGCG 971 Query 75165 AAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAGTGAGTTTGTCCCAATC 75223 || || ||||| || |||||| ||||||||||| |||| |||| || ||||| || Sbjct 970 AAGAAGGCCAGGACGTGTTTGATGAAGTGGCGCTCGCCGTCGTTGAGATTCTCCCAGTC 912 >seq5609 Length=11602 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 3211 TGCTTTCGTTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 3270 Query 79684 TGAGCTACGAAAGC 79697 |||||||||| ||| Sbjct 3271 TGAGCTACGAGAGC 3284 >seq4686 Length=12996 Score = 89.7 bits (98), Expect = 6e-13 Identities = 66/76 (87%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 79623 ACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCA 79681 ||||||||| |||| |||| |||| ||||||||||||||||||||||||||| |||| Sbjct 6413 ACTGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCA 6472 Query 79682 ATTGAGCTACGAAAGC 79697 | ||||||| |||||| Sbjct 6473 ACTGAGCTATGAAAGC 6488 >seq748 Length=29779 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 15719 TGCTTTCGTTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 15660 Query 79684 TGAGCTACGAAAGC 79697 |||||||||| ||| Sbjct 15659 TGAGCTACGAGAGC 15646 >seq16286 Length=4415 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/75 (87%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 458 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 517 Query 79684 TGAGCTACGAAAGCA 79698 ||||||| ||||||| Sbjct 518 TGAGCTATGAAAGCA 532 >seq15348 Length=4734 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 765 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 824 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 825 TGAGCTATGAAAGC 838 >seq15037 Length=4862 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 2634 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 2693 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 2694 TGAGCTATGAAAGC 2707 >seq14803 Length=4953 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 2060 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 2119 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 2120 TGAGCTATGAAAGC 2133 >seq14661 Length=5006 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 4849 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 4908 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 4909 TGAGCTATGAAAGC 4922 >seq13946 Length=5304 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 2399 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 2458 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 2459 TGAGCTATGAAAGC 2472 >seq12434 Length=6009 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 4660 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 4719 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 4720 TGAGCTATGAAAGC 4733 >seq11981 Length=6245 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 2253 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 2194 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 2193 TGAGCTATGAAAGC 2180 >seq8800 Length=8254 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 3156 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 3215 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 3216 TGAGCTATGAAAGC 3229 >seq6280 Length=10718 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 5607 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 5548 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 5547 TGAGCTATGAAAGC 5534 >seq5586 Length=11630 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||| ||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 6514 TGCTCTCGTTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 6573 Query 79684 TGAGCTACGAAAGC 79697 |||||||||| ||| Sbjct 6574 TGAGCTACGAGAGC 6587 >seq4242 Length=13819 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 3452 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 3511 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 3512 TGAGCTATGAAAGC 3525 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 3643 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 3702 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 3703 TGAGCTATGAAAGC 3716 >seq1431 Length=23300 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 15659 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 15718 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 15719 TGAGCTATGAAAGC 15732 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546773220173600