Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0
00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters
Query= NC_028461.1
Length=127011
Score E
Sequences producing significant alignments: (Bits) Value
seq2241 118 9e-22
seq2790 98.7 8e-16
>seq2241
Length=19256
Score = 118 bits (130), Expect = 9e-22
Identities = 192/275 (70%), Gaps = 6/275 (2%)
Strand=Plus/Plus
Query 29897 TAGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGA 29956
|| |||||||| || || | | |||| ||| || || || | || | || |||
Sbjct 1771 TACACGTGAGCATCCCCAATGACATGGATAAAATCACCAGGAACGAGATCACACACATGA 1830
Query 29957 GCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATG 30016
|| | |||| | || || ||||||||| || |||||||| || || || || |||||
Sbjct 1831 GCTAGCATGCAAGTCAGAAGAGAGTAGGAAGCAATGTTAAACGGCACACCAAGGCCCATA 1890
Query 30017 TCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTG---A 30073
||| | || | ||| || | ||||||||||||||| || || |||||| ||||| |
Sbjct 1891 TCCGCTGAACGCTGATACATCTGACACGAGAGCTCCCCTTCCGCCACGTAGAACTGTGCA 1950
Query 30074 CACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCAC 30133
|||| ||||||||||||||| ||||| || | || |||||||| || |
Sbjct 1951 AACAT---GTGGCACGGAGGAAGCGCCATCAGCTTGAGATCAGAAGGGTTCCAAGCCGAT 2007
Query 30134 ACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGAT 30168
| ||||| |||| || || || |||||| ||||
Sbjct 2008 AATATGATACGCCGATCATCAGGATTGTTCTTGAT 2042
>seq2790
Length=17423
Score = 98.7 bits (108), Expect = 8e-16
Identities = 155/221 (70%), Gaps = 6/221 (3%)
Strand=Plus/Plus
Query 29951 ACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGC 30010
|||||||| | ||| | || || || ||||| || |||||||| ||||| || ||
Sbjct 3614 ACGTGAGCTAGAATGCATGTAAGAAGGGAGTAAGAAGCAATGTTAAAAGGTACACCAAGA 3673
Query 30011 CCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAAC 30070
||||| || | || | ||| || | ||||||||||||||||| | ||||| |||
Sbjct 3674 CCCATATCAGCTGAGCGCTGATACATTTGACACGAGAGCTCTCCATTTGCAACGTAGAAC 3733
Query 30071 TG---ACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAG 30127
|| | |||| |||||| |||||||| ||||| || | ||| || |||||
Sbjct 3734 TGAGCAAACAT---GTGGCATGGAGGAAGCGCCATCAGCTTAAGGTCAGAAGGATTCCAA 3790
Query 30128 GCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGAT 30168
|| ||| || || |||| || || ||||||||| ||||
Sbjct 3791 GCCGACATTATAATCCGCCGATCGTCAGGGTTGTTCTTGAT 3831
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 405989853091344
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |