Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0 00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq2241 118 9e-22 seq2790 98.7 8e-16 >seq2241 Length=19256 Score = 118 bits (130), Expect = 9e-22 Identities = 192/275 (70%), Gaps = 6/275 (2%) Strand=Plus/Plus Query 29897 TAGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGA 29956 || |||||||| || || | | |||| ||| || || || | || | || ||| Sbjct 1771 TACACGTGAGCATCCCCAATGACATGGATAAAATCACCAGGAACGAGATCACACACATGA 1830 Query 29957 GCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATG 30016 || | |||| | || || ||||||||| || |||||||| || || || || ||||| Sbjct 1831 GCTAGCATGCAAGTCAGAAGAGAGTAGGAAGCAATGTTAAACGGCACACCAAGGCCCATA 1890 Query 30017 TCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTG---A 30073 ||| | || | ||| || | ||||||||||||||| || || |||||| ||||| | Sbjct 1891 TCCGCTGAACGCTGATACATCTGACACGAGAGCTCCCCTTCCGCCACGTAGAACTGTGCA 1950 Query 30074 CACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCAC 30133 |||| ||||||||||||||| ||||| || | || |||||||| || | Sbjct 1951 AACAT---GTGGCACGGAGGAAGCGCCATCAGCTTGAGATCAGAAGGGTTCCAAGCCGAT 2007 Query 30134 ACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGAT 30168 | ||||| |||| || || || |||||| |||| Sbjct 2008 AATATGATACGCCGATCATCAGGATTGTTCTTGAT 2042 >seq2790 Length=17423 Score = 98.7 bits (108), Expect = 8e-16 Identities = 155/221 (70%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 29951 ACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGC 30010 |||||||| | ||| | || || || ||||| || |||||||| ||||| || || Sbjct 3614 ACGTGAGCTAGAATGCATGTAAGAAGGGAGTAAGAAGCAATGTTAAAAGGTACACCAAGA 3673 Query 30011 CCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAAC 30070 ||||| || | || | ||| || | ||||||||||||||||| | ||||| ||| Sbjct 3674 CCCATATCAGCTGAGCGCTGATACATTTGACACGAGAGCTCTCCATTTGCAACGTAGAAC 3733 Query 30071 TG---ACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAG 30127 || | |||| |||||| |||||||| ||||| || | ||| || ||||| Sbjct 3734 TGAGCAAACAT---GTGGCATGGAGGAAGCGCCATCAGCTTAAGGTCAGAAGGATTCCAA 3790 Query 30128 GCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGAT 30168 || ||| || || |||| || || ||||||||| |||| Sbjct 3791 GCCGACATTATAATCCGCCGATCGTCAGGGTTGTTCTTGAT 3831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405989853091344