Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0 00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq12662 118 7e-22 seq37186 114 8e-21 seq24793 114 8e-21 seq7912 114 8e-21 seq4396 113 3e-20 seq964 111 1e-19 seq11485 109 3e-19 seq806 102 5e-17 seq1346 93.3 3e-14 seq20570 86.0 4e-12 seq14067 86.0 4e-12 seq526 86.0 4e-12 >seq12662 Length=5898 Score = 118 bits (130), Expect = 7e-22 Identities = 159/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 |||||||||||||| || | || |||||| || ||||| || || | ||| || || Sbjct 3934 AGACGCAACACCAAGTGAATGGTTGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGA 3875 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || ||||| || || || || || || | |||||| ||||| || || | || ||| Sbjct 3874 CCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGAGGGATGCCTTCC 3815 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 || ||| |||| || | ||| ||| || ||| ||||| |||||| ||||| | ||| Sbjct 3814 TTATCTTGGATC-TTGGCTTTCACGTTATCAATCGTGTCCGAGCTCTCAACTTCGAGGGT 3756 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || ||||| || || || ||||| || |||||||| Sbjct 3755 GATGGTCTTACCAGTCAAGGTCTTCACGAAGATCTGCAT 3717 Score = 111 bits (122), Expect = 1e-19 Identities = 149/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 34503 ATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTG 34562 ||| ||||| |||||| || ||||| || || | || |||| |||||||||| || Sbjct 3692 ATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCAGCGAGAGTTCTGCCGTCTTCAAGCTG 3633 Query 34563 TTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTT 34622 || || || || || || | ||| |||||||| || | |||||||||||| |||| | Sbjct 3632 CTTGCCTGCGAAGATCAACCTCTGCTGGTCCGGTGGGATCCCCTCCTTGTCTTGGATC-T 3574 Query 34623 TTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGG 34681 ||| ||| ||| | || ||||| ||||||||| || | ||| ||||| || || | Sbjct 3573 TTGCTTTGACGTTGTCGATGGTGTCGGAGCTCTCCACCTCTAGGGTAATCGTCTTTCCCG 3514 Query 34682 TTAACGTTTTCACAAAAATCTGCAT 34706 | || || || || || |||||||| Sbjct 3513 TCAAGGTCTTAACGAAGATCTGCAT 3489 Score = 84.2 bits (92), Expect = 1e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 34515 CTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAA 34574 |||||| || ||||| ||||| | || || | |||| || || || || ||||| || Sbjct 3452 CTCCTTCTGGATGTTGTAATCAGCGAGAGTCCTGCCGTCCTCGAGCTGCTTTCCGGCGAA 3393 Query 34575 TATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGA 34634 || | | ||| || ||||| || | ||||||||||| ||| || | ||||||| Sbjct 3392 GATAAGCCTCTGCTGATCCGGGGGAATGCCCTCCTTGTC-CTGAATCTTGGCTTTAACGT 3334 Query 34635 T-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCA 34693 | || |||||| ||| ||||| || | ||| || || || || || | || || | Sbjct 3333 TGTCGATGGTGTCTGAGCTTTCCACCTCGAGGGTGATTGTCTTTCCCGTGAGAGTCTTAA 3274 Query 34694 CAAAAATCTGCAT 34706 ||||||||||||| Sbjct 3273 CAAAAATCTGCAT 3261 >seq37186 Length=985 Score = 114 bits (126), Expect = 8e-21 Identities = 150/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 34503 ATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTG 34562 ||| ||||| |||||| || ||||| || || | | ||||| |||||||||| || Sbjct 6 ATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCCGCCAATGTTCTGCCGTCTTCAAGCTG 65 Query 34563 TTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTT 34622 || ||||| || || || | ||| |||||||| || | |||||||||||| |||| | Sbjct 66 CTTGCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGGATACCCTCCTTGTCTTGGATC-T 124 Query 34623 TTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGG 34681 | | ||| || | ||| ||||| ||||||||| |||| || || || || |||| Sbjct 125 TAGCTTTGACATTGTCAATGGTGTCGGAGCTCTCCACCTCCAAAGTAATGGTCTTGCCGG 184 Query 34682 TTAACGTTTTCACAAAAATCTGCAT 34706 | || || || || ||||||||||| Sbjct 185 TCAATGTCTTAACGAAAATCTGCAT 209 >seq24793 Length=2311 Score = 114 bits (126), Expect = 8e-21 Identities = 150/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 34503 ATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTG 34562 ||| ||||| |||||| || ||||| || || | | ||||| |||||||||| || Sbjct 1410 ATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCCGCCAATGTTCTGCCGTCTTCAAGCTG 1469 Query 34563 TTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTT 34622 || ||||| || || || | ||| |||||||| || | |||||||||||| |||| | Sbjct 1470 CTTGCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGGATACCCTCCTTGTCTTGGATC-T 1528 Query 34623 TTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGG 34681 ||| ||| ||| | || ||||| ||||||||| || | ||| ||||| || || | Sbjct 1529 TTGCTTTGACGTTGTCGATGGTGTCGGAGCTCTCCACCTCTAGGGTAATCGTCTTTCCCG 1588 Query 34682 TTAACGTTTTCACAAAAATCTGCAT 34706 | || || || || || |||||||| Sbjct 1589 TCAAGGTCTTAACGAAGATCTGCAT 1613 Score = 84.2 bits (92), Expect = 1e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 34515 CTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAA 34574 |||||| || ||||| ||||| | || || | |||| || || || || ||||| || Sbjct 1650 CTCCTTCTGGATGTTGTAATCAGCGAGAGTCCTGCCGTCCTCGAGCTGCTTTCCGGCGAA 1709 Query 34575 TATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGA 34634 || | | ||| || ||||| || | ||||||||||| ||| || | ||||||| Sbjct 1710 GATAAGCCTCTGCTGATCCGGGGGAATGCCCTCCTTGTC-CTGAATCTTGGCTTTAACGT 1768 Query 34635 T-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCA 34693 | || |||||| ||| ||||| || | ||| || || || || || | || || | Sbjct 1769 TGTCGATGGTGTCTGAGCTTTCCACCTCGAGGGTGATTGTCTTTCCCGTGAGAGTCTTAA 1828 Query 34694 CAAAAATCTGCAT 34706 ||||||||||||| Sbjct 1829 CAAAAATCTGCAT 1841 >seq7912 Length=9007 Score = 114 bits (126), Expect = 8e-21 Identities = 159/220 (72%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 |||||||||||||| || || ||| ||||||||| ||||| || || | | || || Sbjct 6345 AGACGCAACACCAAGTGAAGTGTGGACTCCTTTTGGATGTTGTAGTCGGCTAAGGTGCGA 6404 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || ||||| ||||| || || || || | | ||| |||||||| || | |||||| Sbjct 6405 CCATCCTCAAGCTGTTTCCCAGCGAAGATGAGCCTCTGCTGGTCCGGAGGGATACCCTCC 6464 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| |||| || | || ||| | ||| ||||| |||||| || |||| || Sbjct 6465 TTGTCTTGGATC-TTGGCCTTGACGTTGTCAATGGTGTCGGAGCTCTCAACCTCCAAAGT 6523 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || || || || || || || ||||| ||||||||| Sbjct 6524 AATGGTCTTTCCAGTCAAAGTCTTGACAAAGATCTGCATG 6563 Score = 104 bits (114), Expect = 1e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||||||||||||||| || || ||| ||||||||| || || || || | Sbjct 6108 CCACCACGAAGACGCAACACCAAGTGAAGTGTGGACTCCTTTTGGATATTGTAGTCGGCT 6167 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | || ||||| || || || || || || | |||||| |||||||| || Sbjct 6168 AAGGTGCGACCATCCTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGG 6227 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | || ||||| || |||| || | || || | ||| ||||| ||||||||| Sbjct 6228 ATACCTTCCTTATCCTGGATC-TTGGCCTTGACATTGTCAATGGTGTCAGAGCTCTCCAC 6286 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 |||| || || || || ||||| | || || ||||| ||||||||| Sbjct 6287 CTCCAACGTGATGGTCTTGCCGGTAAGTGTCTTGACAAAGATCTGCATG 6335 >seq4396 Length=13502 Score = 113 bits (124), Expect = 3e-20 Identities = 158/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 |||||||||||||| || || || |||||| || |||||||| || | | || || Sbjct 319 AGACGCAACACCAAGTGAAGTGTAGACTCCTTCTGGATGTTATAGTCAGCCAAGGTGCGA 260 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || || || || || || || | |||||| |||||||| || | ||||||| Sbjct 259 CCATCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGGATTCCCTCC 200 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| ||| || | || ||| | ||| ||||| |||||| ||||| | ||| Sbjct 199 TTGTC-CTGAATCTTAGCCTTGACGTTGTCAATGGTGTCGGAGCTCTCAACTTCGAGGGT 141 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || ||||||| || || ||||| |||||||| Sbjct 140 GATTGTCTTTCCGGTTAGTGTCTTGACAAAGATCTGCAT 102 Score = 109 bits (120), Expect = 3e-19 Identities = 157/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| |||||||| || || || ||| || |||||||| ||||| | | || || Sbjct 12708 AGACGTAACACCAAGTGAAGGGTTGACTCTTTCTGAATGTTGTAATCAGCCAAGGTGCGA 12649 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || ||||| || || || || || || | |||||| |||||||| || | |||||| Sbjct 12648 CCATCCTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGGATCCCCTCC 12589 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| ||| || | || ||| | ||| ||||| ||||||||| |||| || Sbjct 12588 TTGTC-CTGAATCTTGGCCTTGACGTTGTCAATGGTGTCGGAGCTCTCCACCTCCAAAGT 12530 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || ||||| | || || |||||||||||||| Sbjct 12529 GATAGTCTTCCCGGTCAGTGTCTTAACAAAAATCTGCAT 12491 Score = 95.1 bits (104), Expect = 8e-15 Identities = 140/196 (71%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 34515 CTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAA 34574 ||| ||||| ||||| || || | || || ||| | ||||||||||| || ||||| || Sbjct 12022 CTCTTTTTGGATGTTGTAGTCAGCGAGAGTACGCCCATCTTCAAGTTGCTTCCCGGCGAA 11963 Query 34575 TATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGA 34634 || | | ||| || ||||| || | || |||||||| ||| || | ||||||| Sbjct 11962 GATAAGCCTCTGCTGATCCGGGGGAATGCCTTCCTTGTC-CTGAATCTTGGCTTTAACGT 11904 Query 34635 T-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCA 34693 | || |||||| ||| ||||| || | ||| ||||| || ||||| | || || | Sbjct 11903 TGTCGATGGTGTCTGAGCTTTCCACCTCGAGGGTGATCGTCTTTCCGGTGAGAGTCTTAA 11844 Query 34694 CAAAAATCTGCATGTT 34709 | || |||||||| || Sbjct 11843 CGAATATCTGCATCTT 11828 >seq964 Length=27231 Score = 111 bits (122), Expect = 1e-19 Identities = 158/220 (72%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||||||| | || || || |||||| || || || ||||||| ||| || || Sbjct 10394 AGACGCAACACAAGGTGAAGGGTCGACTCCTTCTGGATATTGTAATCTGCAAGCGTACGA 10335 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || ||||| ||||| || || || || | | ||| |||||||| || | || ||| Sbjct 10334 CCATCCTCAAGCTGTTTCCCAGCGAAGATGAGTCTCTGCTGGTCCGGTGGGATCCCTTCC 10275 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| ||| || | || ||| || || ||||| ||||||||| |||| || Sbjct 10274 TTGTC-CTGAATCTTAGCCTTGACGTTATCGATCGTGTCAGAGCTCTCCACCTCCAAAGT 10216 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || ||||| || || | || |||||||||||||||||| Sbjct 10215 GATGGTTTTGCCAGTGAGGGTCTTCACAAAAATCTGCATG 10176 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| ||||| || || | ||| | ||| || || ||| || |||||||| || || | Sbjct 10176 GCCACCTCTGAGTCGAAGCACAAGATGCAGCGTAGACTCTTTCTGAATGTTGTAGTCAGC 10117 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || | || || || || ||||||||||| || | | ||| |||||||| || Sbjct 10116 TAGCGTGCGTCCATCCTCCAGCTGCTTACCGGCAAAGATGAGCCTCTGCTGGTCCGGTGG 10057 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | ||||| || || |||| || | || ||| | ||| |||||| |||||| | Sbjct 10056 GATACCCTCTTTATCCTGGATC-TTAGCCTTGACGTTGTCAATGGTGTCTGAGCTCTCAA 9998 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | |||| || || ||||||||||| | || || ||||| || ||||| Sbjct 9997 CCTCCAAAGTGATGGTTTTACCGGTGAGGGTCTTGACAAAGATTTGCAT 9949 Score = 98.7 bits (108), Expect = 6e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | ||||| || || || |||||| || || || || || | | Sbjct 10631 CCACCACGAAGACGAAGAACCAAGTGAAGCGTCGACTCCTTCTGGATATTGTAGTCAGCA 10572 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | || ||||| || ||||| || || || | | |||||||||||| || Sbjct 10571 AGCGTGCGACCATCCTCAAGCTGCTTACCAGCGAAGATGAGTCTCTGTTGGTCCGGAGGG 10512 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | || |||||||| ||| ||| | || || | ||||||||| |||||| || Sbjct 10511 ATCCCTTCCTTGTC-CTGAATTTTAGCCTTCACATTGTCGATTGTGTCTGAGCTCTCAAC 10453 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| ||| || || || || || | || |||||||| || ||||| Sbjct 10452 TTCCAAGGTAATAGTCTTGCCTGTCAGAGTCTTCACAAAGATTTGCAT 10405 Score = 87.8 bits (96), Expect = 1e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 34503 ATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTG 34562 ||||||||| |||||| || || || ||||| | | || || | || || || || Sbjct 9696 ATGGAGAGTCGACTCCTTCTGGATATTGTAATCGGCCAAGGTACGTCCATCCTCGAGCTG 9637 Query 34563 TTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTT 34622 ||||||||| || || | | ||| |||||||| || | || |||||||| |||| | Sbjct 9636 TTTACCGGCGAAGATGAGCCTCTGCTGGTCCGGAGGAATACCTTCCTTGTCCTGGATC-T 9578 Query 34623 TTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGG 34681 | | || ||| || || || || |||||| ||||| | || || || || |||| Sbjct 9577 TAGCCTTGACGTTATCGATGGTATCGGAGCTCTCGACTTCGAGAGTGATGGTCTTGCCGG 9518 Query 34682 TTAACGTTTTCACAAAAATCTGCAT 34706 | | |||||||| ||||| ||||| Sbjct 9517 TGAGAGTTTTCACGAAAATTTGCAT 9493 >seq11485 Length=6519 Score = 109 bits (120), Expect = 3e-19 Identities = 157/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | || | ||| || || |||||| ||||| || ||||| | ||| || || Sbjct 4923 AGACGGAGGACGAGATGAAGCGTAGACTCCTTCTGAATATTGTAATCCGCAAGCGTGCGT 4864 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || ||||| |||||||| || || || | | ||| |||||||| || | ||| ||| Sbjct 4863 CCATCCTCAAGCTGTTTACCAGCGAAGATGAGTCTCTGCTGGTCCGGAGGAATTCCTTCC 4804 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| ||||||| | ||| || | ||| ||||| |||||| || |||| || Sbjct 4803 TTGTCCTGGATCTTT-GCTTTCACATTGTCAATAGTGTCGGAGCTCTCAACCTCCAAAGT 4745 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || || || || |||||||||||||| Sbjct 4744 GATGGTCTTGCCTGTCAAAGTCTTGACAAAAATCTGCAT 4706 Score = 98.7 bits (108), Expect = 6e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | ||||| || ||||| |||||| || ||||| ||||| | Sbjct 5160 CCACCACGAAGACGAAGAACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCAGCC 5101 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | || || || ||||| || || || || | | ||| |||||||| || Sbjct 5100 AAAGTCCGACCATCCTCGAGCTGTTTCCCAGCGAAGATGAGTCTCTGCTGGTCCGGAGGG 5041 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCAC 34658 | || |||||||| ||||| | ||| || | || ||||| ||||||||| Sbjct 5040 ATGCCTTCCTTGTCCTGAATCTTC-GCTTTCACATTGTCGATCGTGTCAGAGCTCTCCAC 4982 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| | ||| || ||||||||||| | || || || ||||||||||| Sbjct 4981 TTCAAGGGTAATGGTTTTACCGGTGAGTGTCTTGACGAAAATCTGCAT 4934 >seq806 Length=29032 Score = 102 bits (112), Expect = 5e-17 Identities = 164/233 (70%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 34478 CGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG 34537 |||| || | ||||| | || | ||| || || |||||| || ||||| || || | Sbjct 17948 CGCCACCACGGAGACGGAGGACGAGATGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGG 18007 Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597 ||||| || ||||||| || || || ||||| || || | ||||| |||||||||| Sbjct 18008 CGAGTGTGCGGCCGTCTTCGAGCTGCTTCCCGGCGAAGATCAGTCGCTGCTGGTCCGGCG 18067 Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCC 34656 | | || |||||||| |||| || | || ||| | || ||||| | ||| Sbjct 18068 GGATCCCTTCCTTGTCCTGGATC-TTGGCCTTGACGTTGTCGATGGTGTCGGAGGACTCG 18126 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 || || | ||||||||| || || |||| |||||||| || |||||||| || Sbjct 18127 ACCTCGAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTT 18179 >seq1346 Length=23970 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || ||||| | ||| ||||| || ||||| ||| || || ||||| || || | | Sbjct 5917 CCACCCCTAAGCCTCAAGACCAAGTGAAGAGTTGACTCTTTCTGGATGTTGTAGTCCGCA 5858 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || |||| | |||||||||||||| || || ||||| | | |||||| ||||| || Sbjct 5857 AGGGTTCTACCATCTTCAAGTTGTTTGCCAGCGAATATCAGCCTCTGTTGATCCGGTGGT 5798 Query 34600 ACTCCCTCCTTGTC 34613 | |||||||||||| Sbjct 5797 ATTCCCTCCTTGTC 5784 >seq20570 Length=3172 Score = 86.0 bits (94), Expect = 4e-12 Identities = 152/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 |||||||||||||| || || || |||||| || ||||| || || | | |||| | Sbjct 301 AGACGCAACACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCCAAGGTTCTC 360 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || | || || || || || || | | ||| || ||||| || | || ||| Sbjct 361 CCGTCCTCCAACTGCTTTCCTGCGAAGATAAGCCTCTGCTGATCCGGAGGAATCCCTTCC 420 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||| || | |||||| | || ||||| ||| ||||| || | ||| Sbjct 421 TTGTCCTGGATC-TTGGCCTTAACGTTGTCGATGGTGTCAGAGCTTTCCACCTCGAGGGT 479 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || | |||||||| || |||||||| Sbjct 480 GATTGTCTTTCCTGTGAGAGTTTTCACGAAGATCTGCAT 518 >seq14067 Length=5256 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/194 (71%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 34514 TCTCCTTTTGAATGTTATAATCTGAAAGTGT-TCGCTCGTCTTCAAGTTGTTTACCGGCA 34572 |||||||||| ||||||||||||| ||| || | || |||| ||| ||||| ||| Sbjct 3992 TCTCCTTTTGGATGTTATAATCTGCAAGCGTGTAACT-ATCTTTCAGTACCTTACCAGCA 4050 Query 34573 AATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC 34632 ||||| | | ||| | || || | || ||| |||| |||| |||||| |||| Sbjct 4051 AATATGATTCTCTGGTCGTATGGTGCCATTCCTTCCTGGTCTTGAATCTTTGTCTTTACA 4110 Query 34633 GATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTC 34692 | |||| |||||| |||||| ||||| | ||| || |||||||| |||||| Sbjct 4111 GTGTAAATGGTGTCTGAGCTCTCAACTTCTAAGGTAATGACTTTACCGGAGTGTGTTTTC 4170 Query 34693 ACAAAAATCTGCAT 34706 |||| || | ||| Sbjct 4171 GCAAATATTTTCAT 4184 >seq526 Length=33339 Score = 86.0 bits (94), Expect = 4e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| ||||| || | ||| || | ||||||||| ||| || || ||||| ||||| | Sbjct 23201 GCCACCTCTGAGCCTCAAGACGAGATGGAGAGTAGACTCTTTCTGGATGTTGTAATCGGC 23142 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || ||||| |||||||||| || |||||||| || || | | ||||||||||| || Sbjct 23141 TAGGGTTCGGCCGTCTTCAAGCTGCTTACCGGCGAAGATGAGCCTTTGTTGGTCCGGTGG 23082 Query 34599 CACTCCCTCCTTGTC 34613 | || || ||||| Sbjct 23081 TATACCTTCTTTGTC 23067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314481303130556