Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0
00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters
Query= NC_028491.1
Length=98392
Score E
Sequences producing significant alignments: (Bits) Value
seq12662 118 7e-22
seq37186 114 8e-21
seq24793 114 8e-21
seq7912 114 8e-21
seq4396 113 3e-20
seq964 111 1e-19
seq11485 109 3e-19
seq806 102 5e-17
seq1346 93.3 3e-14
seq20570 86.0 4e-12
seq14067 86.0 4e-12
seq526 86.0 4e-12
>seq12662
Length=5898
Score = 118 bits (130), Expect = 7e-22
Identities = 159/219 (73%), Gaps = 2/219 (1%)
Strand=Plus/Minus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
|||||||||||||| || | || |||||| || ||||| || || | ||| || ||
Sbjct 3934 AGACGCAACACCAAGTGAATGGTTGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGA 3875
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| || ||||| || || || || || || | |||||| ||||| || || | || |||
Sbjct 3874 CCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGAGGGATGCCTTCC 3815
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
|| ||| |||| || | ||| ||| || ||| ||||| |||||| ||||| | |||
Sbjct 3814 TTATCTTGGATC-TTGGCTTTCACGTTATCAATCGTGTCCGAGCTCTCAACTTCGAGGGT 3756
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| || ||||| || || || ||||| || ||||||||
Sbjct 3755 GATGGTCTTACCAGTCAAGGTCTTCACGAAGATCTGCAT 3717
Score = 111 bits (122), Expect = 1e-19
Identities = 149/205 (73%), Gaps = 2/205 (1%)
Strand=Plus/Minus
Query 34503 ATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTG 34562
||| ||||| |||||| || ||||| || || | || |||| |||||||||| ||
Sbjct 3692 ATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCAGCGAGAGTTCTGCCGTCTTCAAGCTG 3633
Query 34563 TTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTT 34622
|| || || || || || | ||| |||||||| || | |||||||||||| |||| |
Sbjct 3632 CTTGCCTGCGAAGATCAACCTCTGCTGGTCCGGTGGGATCCCCTCCTTGTCTTGGATC-T 3574
Query 34623 TTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGG 34681
||| ||| ||| | || ||||| ||||||||| || | ||| ||||| || || |
Sbjct 3573 TTGCTTTGACGTTGTCGATGGTGTCGGAGCTCTCCACCTCTAGGGTAATCGTCTTTCCCG 3514
Query 34682 TTAACGTTTTCACAAAAATCTGCAT 34706
| || || || || || ||||||||
Sbjct 3513 TCAAGGTCTTAACGAAGATCTGCAT 3489
Score = 84.2 bits (92), Expect = 1e-11
Identities = 136/193 (70%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 34515 CTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAA 34574
|||||| || ||||| ||||| | || || | |||| || || || || ||||| ||
Sbjct 3452 CTCCTTCTGGATGTTGTAATCAGCGAGAGTCCTGCCGTCCTCGAGCTGCTTTCCGGCGAA 3393
Query 34575 TATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGA 34634
|| | | ||| || ||||| || | ||||||||||| ||| || | |||||||
Sbjct 3392 GATAAGCCTCTGCTGATCCGGGGGAATGCCCTCCTTGTC-CTGAATCTTGGCTTTAACGT 3334
Query 34635 T-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCA 34693
| || |||||| ||| ||||| || | ||| || || || || || | || || |
Sbjct 3333 TGTCGATGGTGTCTGAGCTTTCCACCTCGAGGGTGATTGTCTTTCCCGTGAGAGTCTTAA 3274
Query 34694 CAAAAATCTGCAT 34706
|||||||||||||
Sbjct 3273 CAAAAATCTGCAT 3261
>seq37186
Length=985
Score = 114 bits (126), Expect = 8e-21
Identities = 150/205 (73%), Gaps = 2/205 (1%)
Strand=Plus/Plus
Query 34503 ATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTG 34562
||| ||||| |||||| || ||||| || || | | ||||| |||||||||| ||
Sbjct 6 ATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCCGCCAATGTTCTGCCGTCTTCAAGCTG 65
Query 34563 TTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTT 34622
|| ||||| || || || | ||| |||||||| || | |||||||||||| |||| |
Sbjct 66 CTTGCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGGATACCCTCCTTGTCTTGGATC-T 124
Query 34623 TTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGG 34681
| | ||| || | ||| ||||| ||||||||| |||| || || || || ||||
Sbjct 125 TAGCTTTGACATTGTCAATGGTGTCGGAGCTCTCCACCTCCAAAGTAATGGTCTTGCCGG 184
Query 34682 TTAACGTTTTCACAAAAATCTGCAT 34706
| || || || || |||||||||||
Sbjct 185 TCAATGTCTTAACGAAAATCTGCAT 209
>seq24793
Length=2311
Score = 114 bits (126), Expect = 8e-21
Identities = 150/205 (73%), Gaps = 2/205 (1%)
Strand=Plus/Plus
Query 34503 ATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTG 34562
||| ||||| |||||| || ||||| || || | | ||||| |||||||||| ||
Sbjct 1410 ATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCCGCCAATGTTCTGCCGTCTTCAAGCTG 1469
Query 34563 TTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTT 34622
|| ||||| || || || | ||| |||||||| || | |||||||||||| |||| |
Sbjct 1470 CTTGCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGGATACCCTCCTTGTCTTGGATC-T 1528
Query 34623 TTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGG 34681
||| ||| ||| | || ||||| ||||||||| || | ||| ||||| || || |
Sbjct 1529 TTGCTTTGACGTTGTCGATGGTGTCGGAGCTCTCCACCTCTAGGGTAATCGTCTTTCCCG 1588
Query 34682 TTAACGTTTTCACAAAAATCTGCAT 34706
| || || || || || ||||||||
Sbjct 1589 TCAAGGTCTTAACGAAGATCTGCAT 1613
Score = 84.2 bits (92), Expect = 1e-11
Identities = 136/193 (70%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 34515 CTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAA 34574
|||||| || ||||| ||||| | || || | |||| || || || || ||||| ||
Sbjct 1650 CTCCTTCTGGATGTTGTAATCAGCGAGAGTCCTGCCGTCCTCGAGCTGCTTTCCGGCGAA 1709
Query 34575 TATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGA 34634
|| | | ||| || ||||| || | ||||||||||| ||| || | |||||||
Sbjct 1710 GATAAGCCTCTGCTGATCCGGGGGAATGCCCTCCTTGTC-CTGAATCTTGGCTTTAACGT 1768
Query 34635 T-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCA 34693
| || |||||| ||| ||||| || | ||| || || || || || | || || |
Sbjct 1769 TGTCGATGGTGTCTGAGCTTTCCACCTCGAGGGTGATTGTCTTTCCCGTGAGAGTCTTAA 1828
Query 34694 CAAAAATCTGCAT 34706
|||||||||||||
Sbjct 1829 CAAAAATCTGCAT 1841
>seq7912
Length=9007
Score = 114 bits (126), Expect = 8e-21
Identities = 159/220 (72%), Gaps = 2/220 (1%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
|||||||||||||| || || ||| ||||||||| ||||| || || | | || ||
Sbjct 6345 AGACGCAACACCAAGTGAAGTGTGGACTCCTTTTGGATGTTGTAGTCGGCTAAGGTGCGA 6404
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| || ||||| ||||| || || || || | | ||| |||||||| || | ||||||
Sbjct 6405 CCATCCTCAAGCTGTTTCCCAGCGAAGATGAGCCTCTGCTGGTCCGGAGGGATACCCTCC 6464
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
|||||| |||| || | || ||| | ||| ||||| |||||| || |||| ||
Sbjct 6465 TTGTCTTGGATC-TTGGCCTTGACGTTGTCAATGGTGTCGGAGCTCTCAACCTCCAAAGT 6523
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707
|| || || || || || || || ||||| |||||||||
Sbjct 6524 AATGGTCTTTCCAGTCAAAGTCTTGACAAAGATCTGCATG 6563
Score = 104 bits (114), Expect = 1e-17
Identities = 162/229 (71%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| || | ||||||||||||||| || || ||| ||||||||| || || || || |
Sbjct 6108 CCACCACGAAGACGCAACACCAAGTGAAGTGTGGACTCCTTTTGGATATTGTAGTCGGCT 6167
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
| || || | || ||||| || || || || || || | |||||| |||||||| ||
Sbjct 6168 AAGGTGCGACCATCCTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGG 6227
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658
| || ||||| || |||| || | || || | ||| ||||| |||||||||
Sbjct 6228 ATACCTTCCTTATCCTGGATC-TTGGCCTTGACATTGTCAATGGTGTCAGAGCTCTCCAC 6286
Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707
|||| || || || || ||||| | || || ||||| |||||||||
Sbjct 6287 CTCCAACGTGATGGTCTTGCCGGTAAGTGTCTTGACAAAGATCTGCATG 6335
>seq4396
Length=13502
Score = 113 bits (124), Expect = 3e-20
Identities = 158/219 (72%), Gaps = 2/219 (1%)
Strand=Plus/Minus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
|||||||||||||| || || || |||||| || |||||||| || | | || ||
Sbjct 319 AGACGCAACACCAAGTGAAGTGTAGACTCCTTCTGGATGTTATAGTCAGCCAAGGTGCGA 260
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| || || || || || || || || || | |||||| |||||||| || | |||||||
Sbjct 259 CCATCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGGATTCCCTCC 200
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
||||| ||| || | || ||| | ||| ||||| |||||| ||||| | |||
Sbjct 199 TTGTC-CTGAATCTTAGCCTTGACGTTGTCAATGGTGTCGGAGCTCTCAACTTCGAGGGT 141
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| || || ||||||| || || ||||| ||||||||
Sbjct 140 GATTGTCTTTCCGGTTAGTGTCTTGACAAAGATCTGCAT 102
Score = 109 bits (120), Expect = 3e-19
Identities = 157/219 (72%), Gaps = 2/219 (1%)
Strand=Plus/Minus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||| |||||||| || || || ||| || |||||||| ||||| | | || ||
Sbjct 12708 AGACGTAACACCAAGTGAAGGGTTGACTCTTTCTGAATGTTGTAATCAGCCAAGGTGCGA 12649
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| || ||||| || || || || || || | |||||| |||||||| || | ||||||
Sbjct 12648 CCATCCTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGGATCCCCTCC 12589
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
||||| ||| || | || ||| | ||| ||||| ||||||||| |||| ||
Sbjct 12588 TTGTC-CTGAATCTTGGCCTTGACGTTGTCAATGGTGTCGGAGCTCTCCACCTCCAAAGT 12530
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| || || ||||| | || || ||||||||||||||
Sbjct 12529 GATAGTCTTCCCGGTCAGTGTCTTAACAAAAATCTGCAT 12491
Score = 95.1 bits (104), Expect = 8e-15
Identities = 140/196 (71%), Gaps = 2/196 (1%)
Strand=Plus/Minus
Query 34515 CTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAA 34574
||| ||||| ||||| || || | || || ||| | ||||||||||| || ||||| ||
Sbjct 12022 CTCTTTTTGGATGTTGTAGTCAGCGAGAGTACGCCCATCTTCAAGTTGCTTCCCGGCGAA 11963
Query 34575 TATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGA 34634
|| | | ||| || ||||| || | || |||||||| ||| || | |||||||
Sbjct 11962 GATAAGCCTCTGCTGATCCGGGGGAATGCCTTCCTTGTC-CTGAATCTTGGCTTTAACGT 11904
Query 34635 T-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCA 34693
| || |||||| ||| ||||| || | ||| ||||| || ||||| | || || |
Sbjct 11903 TGTCGATGGTGTCTGAGCTTTCCACCTCGAGGGTGATCGTCTTTCCGGTGAGAGTCTTAA 11844
Query 34694 CAAAAATCTGCATGTT 34709
| || |||||||| ||
Sbjct 11843 CGAATATCTGCATCTT 11828
>seq964
Length=27231
Score = 111 bits (122), Expect = 1e-19
Identities = 158/220 (72%), Gaps = 2/220 (1%)
Strand=Plus/Minus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||||||||| | || || || |||||| || || || ||||||| ||| || ||
Sbjct 10394 AGACGCAACACAAGGTGAAGGGTCGACTCCTTCTGGATATTGTAATCTGCAAGCGTACGA 10335
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| || ||||| ||||| || || || || | | ||| |||||||| || | || |||
Sbjct 10334 CCATCCTCAAGCTGTTTCCCAGCGAAGATGAGTCTCTGCTGGTCCGGTGGGATCCCTTCC 10275
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
||||| ||| || | || ||| || || ||||| ||||||||| |||| ||
Sbjct 10274 TTGTC-CTGAATCTTAGCCTTGACGTTATCGATCGTGTCAGAGCTCTCCACCTCCAAAGT 10216
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707
|| ||||| || || | || ||||||||||||||||||
Sbjct 10215 GATGGTTTTGCCAGTGAGGGTCTTCACAAAAATCTGCATG 10176
Score = 100 bits (110), Expect = 2e-16
Identities = 161/229 (70%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538
||| ||||| || || | ||| | ||| || || ||| || |||||||| || || |
Sbjct 10176 GCCACCTCTGAGTCGAAGCACAAGATGCAGCGTAGACTCTTTCTGAATGTTGTAGTCAGC 10117
Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598
|| || || | || || || || ||||||||||| || | | ||| |||||||| ||
Sbjct 10116 TAGCGTGCGTCCATCCTCCAGCTGCTTACCGGCAAAGATGAGCCTCTGCTGGTCCGGTGG 10057
Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657
| ||||| || || |||| || | || ||| | ||| |||||| |||||| |
Sbjct 10056 GATACCCTCTTTATCCTGGATC-TTAGCCTTGACGTTGTCAATGGTGTCTGAGCTCTCAA 9998
Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
| |||| || || ||||||||||| | || || ||||| || |||||
Sbjct 9997 CCTCCAAAGTGATGGTTTTACCGGTGAGGGTCTTGACAAAGATTTGCAT 9949
Score = 98.7 bits (108), Expect = 6e-16
Identities = 160/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| || | |||||| | ||||| || || || |||||| || || || || || | |
Sbjct 10631 CCACCACGAAGACGAAGAACCAAGTGAAGCGTCGACTCCTTCTGGATATTGTAGTCAGCA 10572
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
|| || || | || ||||| || ||||| || || || | | |||||||||||| ||
Sbjct 10571 AGCGTGCGACCATCCTCAAGCTGCTTACCAGCGAAGATGAGTCTCTGTTGGTCCGGAGGG 10512
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658
| || |||||||| ||| ||| | || || | ||||||||| |||||| ||
Sbjct 10511 ATCCCTTCCTTGTC-CTGAATTTTAGCCTTCACATTGTCGATTGTGTCTGAGCTCTCAAC 10453
Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
||||| ||| || || || || || | || |||||||| || |||||
Sbjct 10452 TTCCAAGGTAATAGTCTTGCCTGTCAGAGTCTTCACAAAGATTTGCAT 10405
Score = 87.8 bits (96), Expect = 1e-12
Identities = 144/205 (70%), Gaps = 2/205 (1%)
Strand=Plus/Minus
Query 34503 ATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTG 34562
||||||||| |||||| || || || ||||| | | || || | || || || ||
Sbjct 9696 ATGGAGAGTCGACTCCTTCTGGATATTGTAATCGGCCAAGGTACGTCCATCCTCGAGCTG 9637
Query 34563 TTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTT 34622
||||||||| || || | | ||| |||||||| || | || |||||||| |||| |
Sbjct 9636 TTTACCGGCGAAGATGAGCCTCTGCTGGTCCGGAGGAATACCTTCCTTGTCCTGGATC-T 9578
Query 34623 TTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGG 34681
| | || ||| || || || || |||||| ||||| | || || || || ||||
Sbjct 9577 TAGCCTTGACGTTATCGATGGTATCGGAGCTCTCGACTTCGAGAGTGATGGTCTTGCCGG 9518
Query 34682 TTAACGTTTTCACAAAAATCTGCAT 34706
| | |||||||| ||||| |||||
Sbjct 9517 TGAGAGTTTTCACGAAAATTTGCAT 9493
>seq11485
Length=6519
Score = 109 bits (120), Expect = 3e-19
Identities = 157/219 (72%), Gaps = 2/219 (1%)
Strand=Plus/Minus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||| | || | ||| || || |||||| ||||| || ||||| | ||| || ||
Sbjct 4923 AGACGGAGGACGAGATGAAGCGTAGACTCCTTCTGAATATTGTAATCCGCAAGCGTGCGT 4864
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| || ||||| |||||||| || || || | | ||| |||||||| || | ||| |||
Sbjct 4863 CCATCCTCAAGCTGTTTACCAGCGAAGATGAGTCTCTGCTGGTCCGGAGGAATTCCTTCC 4804
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
||||| ||||||| | ||| || | ||| ||||| |||||| || |||| ||
Sbjct 4803 TTGTCCTGGATCTTT-GCTTTCACATTGTCAATAGTGTCGGAGCTCTCAACCTCCAAAGT 4745
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| || || || || || || || ||||||||||||||
Sbjct 4744 GATGGTCTTGCCTGTCAAAGTCTTGACAAAAATCTGCAT 4706
Score = 98.7 bits (108), Expect = 6e-16
Identities = 160/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| || | |||||| | ||||| || ||||| |||||| || ||||| ||||| |
Sbjct 5160 CCACCACGAAGACGAAGAACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCAGCC 5101
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
| || || | || || || ||||| || || || || | | ||| |||||||| ||
Sbjct 5100 AAAGTCCGACCATCCTCGAGCTGTTTCCCAGCGAAGATGAGTCTCTGCTGGTCCGGAGGG 5041
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCAC 34658
| || |||||||| ||||| | ||| || | || ||||| |||||||||
Sbjct 5040 ATGCCTTCCTTGTCCTGAATCTTC-GCTTTCACATTGTCGATCGTGTCAGAGCTCTCCAC 4982
Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
||| | ||| || ||||||||||| | || || || |||||||||||
Sbjct 4981 TTCAAGGGTAATGGTTTTACCGGTGAGTGTCTTGACGAAAATCTGCAT 4934
>seq806
Length=29032
Score = 102 bits (112), Expect = 5e-17
Identities = 164/233 (70%), Gaps = 2/233 (1%)
Strand=Plus/Plus
Query 34478 CGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG 34537
|||| || | ||||| | || | ||| || || |||||| || ||||| || || |
Sbjct 17948 CGCCACCACGGAGACGGAGGACGAGATGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGG 18007
Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597
||||| || ||||||| || || || ||||| || || | ||||| ||||||||||
Sbjct 18008 CGAGTGTGCGGCCGTCTTCGAGCTGCTTCCCGGCGAAGATCAGTCGCTGCTGGTCCGGCG 18067
Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCC 34656
| | || |||||||| |||| || | || ||| | || ||||| | |||
Sbjct 18068 GGATCCCTTCCTTGTCCTGGATC-TTGGCCTTGACGTTGTCGATGGTGTCGGAGGACTCG 18126
Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709
|| || | ||||||||| || || |||| |||||||| || |||||||| ||
Sbjct 18127 ACCTCGAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTT 18179
>seq1346
Length=23970
Score = 93.3 bits (102), Expect = 3e-14
Identities = 101/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| || ||||| | ||| ||||| || ||||| ||| || || ||||| || || | |
Sbjct 5917 CCACCCCTAAGCCTCAAGACCAAGTGAAGAGTTGACTCTTTCTGGATGTTGTAGTCCGCA 5858
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
|| |||| | |||||||||||||| || || ||||| | | |||||| ||||| ||
Sbjct 5857 AGGGTTCTACCATCTTCAAGTTGTTTGCCAGCGAATATCAGCCTCTGTTGATCCGGTGGT 5798
Query 34600 ACTCCCTCCTTGTC 34613
| ||||||||||||
Sbjct 5797 ATTCCCTCCTTGTC 5784
>seq20570
Length=3172
Score = 86.0 bits (94), Expect = 4e-12
Identities = 152/219 (69%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
|||||||||||||| || || || |||||| || ||||| || || | | |||| |
Sbjct 301 AGACGCAACACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCCAAGGTTCTC 360
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
|||| || | || || || || || || | | ||| || ||||| || | || |||
Sbjct 361 CCGTCCTCCAACTGCTTTCCTGCGAAGATAAGCCTCTGCTGATCCGGAGGAATCCCTTCC 420
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
||||| |||| || | |||||| | || ||||| ||| ||||| || | |||
Sbjct 421 TTGTCCTGGATC-TTGGCCTTAACGTTGTCGATGGTGTCAGAGCTTTCCACCTCGAGGGT 479
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| || || || || | |||||||| || ||||||||
Sbjct 480 GATTGTCTTTCCTGTGAGAGTTTTCACGAAGATCTGCAT 518
>seq14067
Length=5256
Score = 86.0 bits (94), Expect = 4e-12
Identities = 137/194 (71%), Gaps = 2/194 (1%)
Strand=Plus/Plus
Query 34514 TCTCCTTTTGAATGTTATAATCTGAAAGTGT-TCGCTCGTCTTCAAGTTGTTTACCGGCA 34572
|||||||||| ||||||||||||| ||| || | || |||| ||| ||||| |||
Sbjct 3992 TCTCCTTTTGGATGTTATAATCTGCAAGCGTGTAACT-ATCTTTCAGTACCTTACCAGCA 4050
Query 34573 AATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC 34632
||||| | | ||| | || || | || ||| |||| |||| |||||| ||||
Sbjct 4051 AATATGATTCTCTGGTCGTATGGTGCCATTCCTTCCTGGTCTTGAATCTTTGTCTTTACA 4110
Query 34633 GATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTC 34692
| |||| |||||| |||||| ||||| | ||| || |||||||| ||||||
Sbjct 4111 GTGTAAATGGTGTCTGAGCTCTCAACTTCTAAGGTAATGACTTTACCGGAGTGTGTTTTC 4170
Query 34693 ACAAAAATCTGCAT 34706
|||| || | |||
Sbjct 4171 GCAAATATTTTCAT 4184
>seq526
Length=33339
Score = 86.0 bits (94), Expect = 4e-12
Identities = 100/135 (74%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538
||| ||||| || | ||| || | ||||||||| ||| || || ||||| ||||| |
Sbjct 23201 GCCACCTCTGAGCCTCAAGACGAGATGGAGAGTAGACTCTTTCTGGATGTTGTAATCGGC 23142
Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598
|| ||||| |||||||||| || |||||||| || || | | ||||||||||| ||
Sbjct 23141 TAGGGTTCGGCCGTCTTCAAGCTGCTTACCGGCGAAGATGAGCCTTTGTTGGTCCGGTGG 23082
Query 34599 CACTCCCTCCTTGTC 34613
| || || |||||
Sbjct 23081 TATACCTTCTTTGTC 23067
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 314481303130556
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |