Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0
00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters
Query= NC_029132.1
Length=140122
Score E
Sequences producing significant alignments: (Bits) Value
seq2241 129 5e-25
seq2790 84.2 2e-11
>seq2241
Length=19256
Score = 129 bits (142), Expect = 5e-25
Identities = 209/293 (71%), Gaps = 6/293 (2%)
Strand=Plus/Plus
Query 6596 TCCCCAGGAACCA-ACCCCACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGC 6654
|| |||||||| | | | ||| |||||||| | |||| | || || |||| ||| |||
Sbjct 1804 TCACCAGGAACGAGATCACAC-ACATGAGCTAGCATGCAAGTCAGAAGAGAGTAGGAAGC 1862
Query 6655 AATGTTGAACGGCACCCCTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAG 6714
|||||| |||||||| || | ||||| || | || || ||||| | ||| || || ||
Sbjct 1863 AATGTTAAACGGCACACCAAGGCCCATATCCGCTGAACGCTGATACATCTGACACGAGAG 1922
Query 6715 CTCCCCATTCGCGACGTAGAATTG-GCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAG 6773
|||||| | ||| |||||||| || ||| | |||||||||| || |||||||||||
Sbjct 1923 CTCCCCTTCCGCCACGTAGAACTGTGCAAACA-TGTGGCACGGAGGAAGCGCCATCAGCT 1981
Query 6774 GGAGATCCTTCGGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCA 6833
|||||| |||||||| || | | | ||| | | |||||||| || ||| |
Sbjct 1982 TGAGATCAGAAGGGTTCCAAGCCGATAATATGATACGCCGATCATCAGGATTGTTCTTGA 2041
Query 6834 AGGTGTCGATCACGTACTGC-AGCTGGTCCGCTCCCTGTCCCGAATAGTCCGC 6885
||||||| || | |||| ||||| || ||| || || | ||| || ||
Sbjct 2042 TCTTGTCGATTACAT-CTGCGAGCTGATCAAATCCTTGGCCAGTATAATCAGC 2093
Score = 129 bits (142), Expect = 5e-25
Identities = 209/293 (71%), Gaps = 6/293 (2%)
Strand=Plus/Minus
Query 34460 GCGGACTATTCGGGACAGGGAGCGGACCAGCT-GCAGTACGTGATCGACACCTTGAAGCG 34518
|| || ||| | || || ||| || ||||| |||| | || ||||||| | |||
Sbjct 2093 GCTGATTATACTGGCCAAGGATTTGATCAGCTCGCAG-ATGTAATCGACAAGATCAAGAA 2035
Query 34519 GAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGAT 34578
|| |||||||| | | ||| | | | || |||||||| |||||| |||||
Sbjct 2034 CAATCCTGATGATCGGCGTATCATATTATCGGCTTGGAACCCTTCTGATCTCAAGCTGAT 1975
Query 34579 GGCGCTCCCCCCGTGCCACACCCTCTGC-CAATTCTACGTCGCGAATGGGGAGCTGTCCT 34637
|||||| || |||||||||| | ||| || |||||||| ||| | |||||||| || |
Sbjct 1974 GGCGCTTCCTCCGTGCCACA-TGTTTGCACAGTTCTACGTGGCGGAAGGGGAGCTCTCGT 1916
Query 34638 GCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTT 34697
| ||| | ||||| || || | || ||||| | || |||||||| ||||||||| |
Sbjct 1915 GTCAGATGTATCAGCGTTCAGCGGATATGGGCCTTGGTGTGCCGTTTAACATTGCTTCCT 1856
Query 34698 ACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGT-TGGTTCCTGGGGA 34749
|| |||| || || | |||| | |||||||| ||| | | | |||||||| ||
Sbjct 1855 ACTCTCTTCTGACTTGCATGCTAGCTCATGT-GTGTGATCTCGTTCCTGGTGA 1804
>seq2790
Length=17423
Score = 84.2 bits (92), Expect = 2e-11
Identities = 160/233 (69%), Gaps = 2/233 (1%)
Strand=Plus/Plus
Query 6617 ACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAAC 6676
|| ||||| | ||| | || || || | |||| ||||||||| || || || || |
Sbjct 3614 ACGTGAGCTAGAATGCATGTAAGAAGGGAGTAAGAAGCAATGTTAAAAGGTACACCAAGA 3673
Query 6677 CCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAAT 6736
||||| || | || || ||||| | || || || ||||| ||||| || ||||||||
Sbjct 3674 CCCATATCAGCTGAGCGCTGATACATTTGACACGAGAGCTCTCCATTTGCAACGTAGAAC 3733
Query 6737 TG-GCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGC 6795
|| ||| | ||||||| || || ||||||||||| || || || ||||| ||
Sbjct 3734 TGAGCAAACA-TGTGGCATGGAGGAAGCGCCATCAGCTTAAGGTCAGAAGGATTCCAAGC 3792
Query 6796 GCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGT 6848
|||| | |||| | || |||||||| ||| | ||| ||| ||||
Sbjct 3793 CGACATTATAATCCGCCGATCGTCAGGGTTGTTCTTGATCTTGTTGATTACGT 3845
Score = 84.2 bits (92), Expect = 2e-11
Identities = 160/233 (69%), Gaps = 2/233 (1%)
Strand=Plus/Minus
Query 34497 ACGTGATCGACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGA 34556
|||| ||| ||| | ||| |||||||| || | |||| | |||| || ||||
Sbjct 3845 ACGTAATCAACAAGATCAAGAACAACCCTGACGATCGGCGGATTATAATGTCGGCTTGGA 3786
Query 34557 ACCCGAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGC-CAATTCTAC 34615
| || || || ||||||||||| || || ||||||| | ||| || ||||||
Sbjct 3785 ATCCTTCTGACCTTAAGCTGATGGCGCTTCCTCCATGCCACA-TGTTTGCTCAGTTCTAC 3727
Query 34616 GTCGCGAATGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGG 34675
|| || ||||| ||||| || || || | ||||| || || | || ||||| | ||
Sbjct 3726 GTTGCAAATGGAGAGCTCTCGTGTCAAATGTATCAGCGCTCAGCTGATATGGGTCTTGGT 3667
Query 34676 GTGCCGTTCAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGT 34728
|| || || ||||||||| |||| | || || || | ||| | ||||| ||
Sbjct 3666 GTACCTTTTAACATTGCTTCTTACTCCCTTCTTACATGCATTCTAGCTCACGT 3614
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 447899688479040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |