Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0 00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq2241 129 5e-25 seq2790 84.2 2e-11 >seq2241 Length=19256 Score = 129 bits (142), Expect = 5e-25 Identities = 209/293 (71%), Gaps = 6/293 (2%) Strand=Plus/Plus Query 6596 TCCCCAGGAACCA-ACCCCACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGC 6654 || |||||||| | | | ||| |||||||| | |||| | || || |||| ||| ||| Sbjct 1804 TCACCAGGAACGAGATCACAC-ACATGAGCTAGCATGCAAGTCAGAAGAGAGTAGGAAGC 1862 Query 6655 AATGTTGAACGGCACCCCTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAG 6714 |||||| |||||||| || | ||||| || | || || ||||| | ||| || || || Sbjct 1863 AATGTTAAACGGCACACCAAGGCCCATATCCGCTGAACGCTGATACATCTGACACGAGAG 1922 Query 6715 CTCCCCATTCGCGACGTAGAATTG-GCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAG 6773 |||||| | ||| |||||||| || ||| | |||||||||| || ||||||||||| Sbjct 1923 CTCCCCTTCCGCCACGTAGAACTGTGCAAACA-TGTGGCACGGAGGAAGCGCCATCAGCT 1981 Query 6774 GGAGATCCTTCGGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCA 6833 |||||| |||||||| || | | | ||| | | |||||||| || ||| | Sbjct 1982 TGAGATCAGAAGGGTTCCAAGCCGATAATATGATACGCCGATCATCAGGATTGTTCTTGA 2041 Query 6834 AGGTGTCGATCACGTACTGC-AGCTGGTCCGCTCCCTGTCCCGAATAGTCCGC 6885 ||||||| || | |||| ||||| || ||| || || | ||| || || Sbjct 2042 TCTTGTCGATTACAT-CTGCGAGCTGATCAAATCCTTGGCCAGTATAATCAGC 2093 Score = 129 bits (142), Expect = 5e-25 Identities = 209/293 (71%), Gaps = 6/293 (2%) Strand=Plus/Minus Query 34460 GCGGACTATTCGGGACAGGGAGCGGACCAGCT-GCAGTACGTGATCGACACCTTGAAGCG 34518 || || ||| | || || ||| || ||||| |||| | || ||||||| | ||| Sbjct 2093 GCTGATTATACTGGCCAAGGATTTGATCAGCTCGCAG-ATGTAATCGACAAGATCAAGAA 2035 Query 34519 GAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGAT 34578 || |||||||| | | ||| | | | || |||||||| |||||| ||||| Sbjct 2034 CAATCCTGATGATCGGCGTATCATATTATCGGCTTGGAACCCTTCTGATCTCAAGCTGAT 1975 Query 34579 GGCGCTCCCCCCGTGCCACACCCTCTGC-CAATTCTACGTCGCGAATGGGGAGCTGTCCT 34637 |||||| || |||||||||| | ||| || |||||||| ||| | |||||||| || | Sbjct 1974 GGCGCTTCCTCCGTGCCACA-TGTTTGCACAGTTCTACGTGGCGGAAGGGGAGCTCTCGT 1916 Query 34638 GCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTT 34697 | ||| | ||||| || || | || ||||| | || |||||||| ||||||||| | Sbjct 1915 GTCAGATGTATCAGCGTTCAGCGGATATGGGCCTTGGTGTGCCGTTTAACATTGCTTCCT 1856 Query 34698 ACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGT-TGGTTCCTGGGGA 34749 || |||| || || | |||| | |||||||| ||| | | | |||||||| || Sbjct 1855 ACTCTCTTCTGACTTGCATGCTAGCTCATGT-GTGTGATCTCGTTCCTGGTGA 1804 >seq2790 Length=17423 Score = 84.2 bits (92), Expect = 2e-11 Identities = 160/233 (69%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 6617 ACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAAC 6676 || ||||| | ||| | || || || | |||| ||||||||| || || || || | Sbjct 3614 ACGTGAGCTAGAATGCATGTAAGAAGGGAGTAAGAAGCAATGTTAAAAGGTACACCAAGA 3673 Query 6677 CCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAAT 6736 ||||| || | || || ||||| | || || || ||||| ||||| || |||||||| Sbjct 3674 CCCATATCAGCTGAGCGCTGATACATTTGACACGAGAGCTCTCCATTTGCAACGTAGAAC 3733 Query 6737 TG-GCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGC 6795 || ||| | ||||||| || || ||||||||||| || || || ||||| || Sbjct 3734 TGAGCAAACA-TGTGGCATGGAGGAAGCGCCATCAGCTTAAGGTCAGAAGGATTCCAAGC 3792 Query 6796 GCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGT 6848 |||| | |||| | || |||||||| ||| | ||| ||| |||| Sbjct 3793 CGACATTATAATCCGCCGATCGTCAGGGTTGTTCTTGATCTTGTTGATTACGT 3845 Score = 84.2 bits (92), Expect = 2e-11 Identities = 160/233 (69%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 34497 ACGTGATCGACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGA 34556 |||| ||| ||| | ||| |||||||| || | |||| | |||| || |||| Sbjct 3845 ACGTAATCAACAAGATCAAGAACAACCCTGACGATCGGCGGATTATAATGTCGGCTTGGA 3786 Query 34557 ACCCGAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGC-CAATTCTAC 34615 | || || || ||||||||||| || || ||||||| | ||| || |||||| Sbjct 3785 ATCCTTCTGACCTTAAGCTGATGGCGCTTCCTCCATGCCACA-TGTTTGCTCAGTTCTAC 3727 Query 34616 GTCGCGAATGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGG 34675 || || ||||| ||||| || || || | ||||| || || | || ||||| | || Sbjct 3726 GTTGCAAATGGAGAGCTCTCGTGTCAAATGTATCAGCGCTCAGCTGATATGGGTCTTGGT 3667 Query 34676 GTGCCGTTCAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGT 34728 || || || ||||||||| |||| | || || || | ||| | ||||| || Sbjct 3666 GTACCTTTTAACATTGCTTCTTACTCCCTTCTTACATGCATTCTAGCTCACGT 3614 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447899688479040