Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0 00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq2241 86.0 5e-12 >seq2241 Length=19256 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/207 (69%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 118488 ATAGACATGAGCATCCCCAATTGTATGTATGAATTCACCAGGTGTAAGCCCTGTCAGGTG 118547 ||| || |||||||||||||| ||| || || |||||||| || | || || Sbjct 1770 ATACACGTGAGCATCCCCAATGACATGGATAAAATCACCAGGAACGAGATCACACACATG 1829 Query 118548 AGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGAACACCCAGACCCAT 118607 ||| | |||| | |||| | | |||| || | ||||| || ||||| || ||||| Sbjct 1830 AGCTAGCATGCAAGTCAGAAGAGAGTAGGAAGCAATGTTAAACGGCACACCAAGGCCCAT 1889 Query 118608 GTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCAACATAAAACTGACT 118667 || ||||| | ||| |||| || || ||||||||||| | || || || ||||| Sbjct 1890 ATCCGCTGAACGCTGATACATCTGACACGAGAGCTCCCCTTCCGCCACGTAGAACTGTGC 1949 Query 118668 TATGATGTGACATGGAGGCAGAACCAT 118694 | ||||| || ||||| || |||| Sbjct 1950 AAACATGTGGCACGGAGGAAGCGCCAT 1976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414149810444848