Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0 00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq1703 95.1 9e-15 seq7912 86.0 4e-12 seq964 86.0 4e-12 seq11485 84.2 2e-11 seq37186 82.4 5e-11 >seq1703 Length=21771 Score = 95.1 bits (104), Expect = 9e-15 Identities = 162/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 || |||||||| || ||||||||||| || ||||| || || | || || |||||| Sbjct 19053 AAGATGCAAATCTTCGTGAAAACTCTCACCGGGAAGACAATCACCCTCGAGGTGGAAAGC 18994 Query 27847 ACCG--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 ||| || || |||| || ||| || || ||||| ||||| | || || Sbjct 18993 TCCGACACCATCGACAA--CGTGAAAGCCAAGATCCAGGACAAGGAAGGGATCCCTCCGG 18936 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | ||||| || | || || |||||||| || | || || | |||| |||| |||||| Sbjct 18935 ATCAGCAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAGGATGGTCGCACCTTGGCCGATT 18876 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 |||| ||||| || ||| || | || ||||| |||||| | ||||| ||| Sbjct 18875 ACAATATCCAGAAGGAGTCTACGCTTCACTTGGTCTTGCGTCTACGTGGAGGC 18823 >seq7912 Length=9007 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||| || ||| | ||||| || ||||| | || || || ||| || Sbjct 6562 ATGCAGATCTTTGTCAAGACTTTGACTGGAAAGACCATTACTTTGGAGGTTGAGAGCTCC 6503 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || |||| ||||| || || ||||| || ||| | || ||| | Sbjct 6502 GACACCATTGACAAC--GTCAAGGCCAAGATCCAAGACAAGGAGGGTATCCCTCCGGACC 6445 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || | || || || || ||||| | || || | |||| ||| |||| |||| Sbjct 6444 AGCAGAGGCTCATCTTCGCTGGGAAACAGCTTGAGGATGGTCGCACCTTAGCCGACTACA 6385 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 |||||||||| ||| ||| | || ||||| |||||| ||||||| ||| Sbjct 6384 ACATCCAAAAGGAGTCCACACTTCACTTGGTGTTGCGTCTGCGTGGAGGC 6335 >seq964 Length=27231 Score = 86.0 bits (94), Expect = 4e-12 Identities = 148/215 (69%), Gaps = 10/215 (5%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||| ||||||||||| || || || || || | || ||||| ||| || Sbjct 9493 ATGCAAATTTTCGTGAAAACTCTCACCGGCAAGACCATCACTCTCGAAGTCGAGAGCTCC 9552 Query 27850 GACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 || ||| |||| ||||| || || ||||| |||||| |||| || Sbjct 9553 GA-----TACCATCGATAACGTCAAGGCTAAGATCCAGGACAAGGAAGGTATTCCTCCGG 9607 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | ||||| || | || || ||||| ||||| | || || | ||| | |||| |||||| Sbjct 9608 ACCAGCAGAGGCTCATCTTCGCCGGTAAACAGCTCGAGGATGGACGTACCTTGGCCGATT 9667 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTT 27999 |||| ||||| || ||| ||| | ||| | ||| Sbjct 9668 ACAATATCCAGAAGGAGTCGACTCTCCATCTCGTT 9702 >seq11485 Length=6519 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||| |||||||| || || || || || || | || ||||| ||| || Sbjct 4478 ATGCAAATTTTCGTGAAAACACTCACCGGCAAGACCATCACTCTCGAGGTCGAGAGCTCC 4537 Query 27850 G--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 | || || ||||| ||||| ||| || ||||| ||||| | || || | Sbjct 4538 GACACTATAGACAAT--GTCAAGGCAAAGATCCAGGACAAGGAAGGCATCCCTCCCGACC 4595 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || | || || || || || || | || |||| ||||| | || ||||||||| Sbjct 4596 AGCAGAGGCTCATCTTCGCTGGGAAGCAGCTAGAAGACGGACGCACCCTGGCCGATTACA 4655 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| || ||| ||| | ||| | || | ||| | ||||| || Sbjct 4656 ACATCCAGAAGGAGTCAACTCTCCATCTCGTACTTCGTCTCCGTGGTGG 4704 >seq37186 Length=985 Score = 82.4 bits (90), Expect = 5e-11 Identities = 138/195 (71%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| || || || ||||| |||||||| || || | || || |||||| || Sbjct 666 ATGCAAATCTTCGTTAAGACTCTCACTGGGAAGACGATCACCCTCGAGGTGGAAAGCTCC 607 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAAT-AGCCGACAAAGAAGGTGTTCCGATGGAG 27906 ||| || |||| || | || | || | | || |||||||| ||| | || || Sbjct 606 GACACCATCGACAA-CGTTAAAGCCAAGATTCAG--GACAAAGAGGGTATCCCTCCCGAT 550 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 ||||| || | || || ||||| ||||| ||||| |||| | | ||| | || ||| Sbjct 549 CAGCAGAGGCTTATCTTCGCCGGGAAACAGTTGGAGGACGGCAGAACATTGGCTGACTAC 490 Query 27967 AACATCCAAAAAGAG 27981 ||||||||||||||| Sbjct 489 AACATCCAAAAAGAG 475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355581652590564