Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0 00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq4396 102 7e-17 seq1703 95.1 1e-14 seq1045 87.8 2e-12 seq964 87.8 2e-12 seq806 87.8 2e-12 seq3667 84.2 2e-11 >seq4396 Length=13502 Score = 102 bits (112), Expect = 7e-17 Identities = 156/217 (72%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 ||||||||||| || || || |||||| || || || ||||| || | || || | Sbjct 12705 CGTAACACCAAGTGAAGGGTTGACTCTTTCTGAATGTTGTAATCAGCCAAGGTGCGACCA 12646 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGT-CGGTGGGCACGCTCTCTTT 39188 || |||||||| ||||| || || || ||||||||||||| ||||||| | | ||| || Sbjct 12645 TCCTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGG-ATCCCCTCCTT 12587 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGA 39247 |||| || || |||| ||| | | | || ||| |||||| |||| |||| Sbjct 12586 GTCCTGAATCTTGGCCTTGA-CGTTGTCAATGGTGTCGGAGCTCTCCACCTCCAAAGTGA 12528 Query 39248 TACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || | || || ||||| || |||||||| || ||||| Sbjct 12527 TAGTCTTCCCGGTCAGTGTCTTAACAAAAATCTGCAT 12491 >seq1703 Length=21771 Score = 95.1 bits (104), Expect = 1e-14 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 ||||||||||| || || || |||||| || || || ||||| || | || || | Sbjct 18152 CGTAACACCAAGTGAAGGGTCGACTCTTTCTGAATGTTGTAATCAGCCAAGGTGCGACCA 18211 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || || ||||| || || || ||||| || | ||||||||| | || | | ||||||| Sbjct 18212 TCCTCGAGCTGCTTCCCAGCGAATATCAGCCTCTGCTGGTCCGGAGGGATACCCTCTTTG 18271 Query 39190 TCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248 || ||||||| ||| | ||| | | | || ||| |||||| || | ||||| Sbjct 18272 TCTTGGATTTTCGCTTTCA-CGTTGTCAATGGTGTCGGAACTCTCCACCTCTAAAGTGAT 18330 Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | ||||| |||| ||| ||||| ||||| ||||| Sbjct 18331 CGTCTTTCCTGTCAACGTCTTAACGAAGATCTGCAT 18366 Score = 89.7 bits (98), Expect = 4e-13 Identities = 165/237 (70%), Gaps = 4/237 (2%) Strand=Plus/Plus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || |||||| | || || || ||||| || ||||| ||| || || ||||| ||||| Sbjct 18820 CATGCCTCCACGTAGACGCAAGACCAAGTGAAGCGTAGACTCCTTCTGGATATTGTAATC 18879 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGT-CGG 39172 ||| | || || | || || ||||| || || || || || ||||||||||| | ||| Sbjct 18880 GGCCAAGGTGCGACCATCCTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCCGG 18939 Query 39173 TGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGAC 39231 ||| | || || |||||| ||| || ||| | ||| | | | || ||| Sbjct 18940 AGGGATCCCT-TCCTTGTCCTGGATCTTGGCTTTCA-CGTTGTCGATGGTGTCGGAGCTT 18997 Query 39232 TCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTT 39288 ||||| || | ||||| | || || || || ||||| || ||||||||||||||| Sbjct 18998 TCCACCTCGAGGGTGATTGTCTTCCCGGTGAGAGTTTTCACGAAGATTTGCATCTTT 19054 >seq1045 Length=26565 Score = 87.8 bits (96), Expect = 2e-12 Identities = 139/197 (71%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 ||| || || || || || ||||| || || || |||| || |||||||| || || || Sbjct 2827 CTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGCCCGTCCTCGAGCTGTTTCCCGGCGAA 2886 Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212 || || ||||||||||| | || | || || |||||| ||| || |||| ||| Sbjct 2887 GATCAGCCGCTGCTGGTCCGGAGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTGA-CGT 2945 Query 39213 CG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAA 39271 | | | || ||| ||||| || || | ||||| | || ||||| || ||||| | Sbjct 2946 TGTCGATGGTGTCGGAGGACTCGACCTCGAGGGTGATTGTCTTCCCCGTTAGGGTTTTCA 3005 Query 39272 CAAAGATTTGCATCTTT 39288 | ||||| ||||||||| Sbjct 3006 CGAAGATCTGCATCTTT 3022 >seq964 Length=27231 Score = 87.8 bits (96), Expect = 2e-12 Identities = 165/236 (70%), Gaps = 10/236 (4%) Strand=Plus/Minus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || ||| ||||| | || | ||| | ||| ||||| |||||| || || || || || Sbjct 10179 CATGCCACCTCTGAGTCGAAGCACAAGATGCAGCGTAGACTCTTTCTGAATGTTGTAGTC 10120 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GG 39172 || || || ||| | || || ||||| || || ||||| || || | ||||||||| || Sbjct 10119 AGCTAGCGTGCGTCCATCCTCCAGCTGCTTACCGGCAAAGATGAGCCTCTGCTGGTCCGG 10060 Query 39173 TGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCG-TATC---GCTC 39228 |||| | | |||||| ||| ||| || |||| ||| | || | | || |||| Sbjct 10059 TGGG-ATACCCTCTTTATCCTGGATCTTAGCCTTGA-CGTTGTCAATGGTGTCTGAGCTC 10002 Query 39229 GACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || || |||| ||||| |||| || || || || || |||||||||||||| Sbjct 10001 ---TCAACCTCCAAAGTGATGGTTTTACCGGTGAGGGTCTTGACAAAGATTTGCAT 9949 >seq806 Length=29032 Score = 87.8 bits (96), Expect = 2e-12 Identities = 152/216 (70%), Gaps = 4/216 (2%) Strand=Plus/Plus Query 39081 ATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTG 39140 ||| ||||| ||| || || || || || ||||| ||||| || |||| || ||||| Sbjct 17973 ATGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGTGTGCGGCCGTCTTCGAGCTG 18032 Query 39141 TTTGCCCGCAAATATAAGACGCTGCTGGT-CGGTGGGCACGCTCTCTTTGTCCATGATTT 39199 || || || || || || |||||||||| ||| ||| | || || |||||| ||| | Sbjct 18033 CTTCCCGGCGAAGATCAGTCGCTGCTGGTCCGGCGGGATCCCT-TCCTTGTCCTGGATCT 18091 Query 39200 TCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCC 39258 | |||| ||| | | | || ||| ||||| || || | || || | || ||| Sbjct 18092 TGGCCTTGA-CGTTGTCGATGGTGTCGGAGGACTCGACCTCGAGGGTTATCGTCTTCCCC 18150 Query 39259 GTCAGCGTTTTAACAAAGATTTGCATCTTTACGCCG 39294 || || ||||| || ||||| ||||||||| || || Sbjct 18151 GTTAGGGTTTTCACGAAGATCTGCATCTTTGCGGCG 18186 >seq3667 Length=14967 Score = 84.2 bits (92), Expect = 2e-11 Identities = 138/199 (69%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 ||| || || || || || ||||| || || || |||| || |||||||| || || || Sbjct 5530 CTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGCCCGTCCTCGAGCTGTTTCCCGGCGAA 5589 Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212 || || ||||||||||| | || | || || |||||| ||| || ||||| | Sbjct 5590 GATCAGCCGCTGCTGGTCCGGAGGGATGCCTTCCTTGTCCTGGATCTTGGCTTTGACATT 5649 Query 39213 CGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAAC 39272 | | || ||| || || || || | ||||| | || ||||| || ||||| || Sbjct 5650 GTCGATGGTGTCGGAAGATTCGACCTCGAGGGTGATCGTCTTCCCCGTTAGGGTTTTCAC 5709 Query 39273 AAAGATTTGCATCTTTACG 39291 ||||| ||||||||| || Sbjct 5710 GAAGATCTGCATCTTTGCG 5728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429206722348316