Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0
00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters
Query= NC_029996.1
Length=134272
Score E
Sequences producing significant alignments: (Bits) Value
seq4396 102 7e-17
seq1703 95.1 1e-14
seq1045 87.8 2e-12
seq964 87.8 2e-12
seq806 87.8 2e-12
seq3667 84.2 2e-11
>seq4396
Length=13502
Score = 102 bits (112), Expect = 7e-17
Identities = 156/217 (72%), Gaps = 4/217 (2%)
Strand=Plus/Minus
Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129
||||||||||| || || || |||||| || || || ||||| || | || || |
Sbjct 12705 CGTAACACCAAGTGAAGGGTTGACTCTTTCTGAATGTTGTAATCAGCCAAGGTGCGACCA 12646
Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGT-CGGTGGGCACGCTCTCTTT 39188
|| |||||||| ||||| || || || ||||||||||||| ||||||| | | ||| ||
Sbjct 12645 TCCTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGG-ATCCCCTCCTT 12587
Query 39189 GTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGA 39247
|||| || || |||| ||| | | | || ||| |||||| |||| ||||
Sbjct 12586 GTCCTGAATCTTGGCCTTGA-CGTTGTCAATGGTGTCGGAGCTCTCCACCTCCAAAGTGA 12528
Query 39248 TACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
|| | || || ||||| || |||||||| || |||||
Sbjct 12527 TAGTCTTCCCGGTCAGTGTCTTAACAAAAATCTGCAT 12491
>seq1703
Length=21771
Score = 95.1 bits (104), Expect = 1e-14
Identities = 152/216 (70%), Gaps = 2/216 (1%)
Strand=Plus/Plus
Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129
||||||||||| || || || |||||| || || || ||||| || | || || |
Sbjct 18152 CGTAACACCAAGTGAAGGGTCGACTCTTTCTGAATGTTGTAATCAGCCAAGGTGCGACCA 18211
Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189
|| || ||||| || || || ||||| || | ||||||||| | || | | |||||||
Sbjct 18212 TCCTCGAGCTGCTTCCCAGCGAATATCAGCCTCTGCTGGTCCGGAGGGATACCCTCTTTG 18271
Query 39190 TCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248
|| ||||||| ||| | ||| | | | || ||| |||||| || | |||||
Sbjct 18272 TCTTGGATTTTCGCTTTCA-CGTTGTCAATGGTGTCGGAACTCTCCACCTCTAAAGTGAT 18330
Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
| ||||| |||| ||| ||||| ||||| |||||
Sbjct 18331 CGTCTTTCCTGTCAACGTCTTAACGAAGATCTGCAT 18366
Score = 89.7 bits (98), Expect = 4e-13
Identities = 165/237 (70%), Gaps = 4/237 (2%)
Strand=Plus/Plus
Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113
|| |||||| | || || || ||||| || ||||| ||| || || ||||| |||||
Sbjct 18820 CATGCCTCCACGTAGACGCAAGACCAAGTGAAGCGTAGACTCCTTCTGGATATTGTAATC 18879
Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGT-CGG 39172
||| | || || | || || ||||| || || || || || ||||||||||| | |||
Sbjct 18880 GGCCAAGGTGCGACCATCCTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCCGG 18939
Query 39173 TGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGAC 39231
||| | || || |||||| ||| || ||| | ||| | | | || |||
Sbjct 18940 AGGGATCCCT-TCCTTGTCCTGGATCTTGGCTTTCA-CGTTGTCGATGGTGTCGGAGCTT 18997
Query 39232 TCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTT 39288
||||| || | ||||| | || || || || ||||| || |||||||||||||||
Sbjct 18998 TCCACCTCGAGGGTGATTGTCTTCCCGGTGAGAGTTTTCACGAAGATTTGCATCTTT 19054
>seq1045
Length=26565
Score = 87.8 bits (96), Expect = 2e-12
Identities = 139/197 (71%), Gaps = 2/197 (1%)
Strand=Plus/Plus
Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152
||| || || || || || ||||| || || || |||| || |||||||| || || ||
Sbjct 2827 CTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGCCCGTCCTCGAGCTGTTTCCCGGCGAA 2886
Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212
|| || ||||||||||| | || | || || |||||| ||| || |||| |||
Sbjct 2887 GATCAGCCGCTGCTGGTCCGGAGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTGA-CGT 2945
Query 39213 CG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAA 39271
| | | || ||| ||||| || || | ||||| | || ||||| || ||||| |
Sbjct 2946 TGTCGATGGTGTCGGAGGACTCGACCTCGAGGGTGATTGTCTTCCCCGTTAGGGTTTTCA 3005
Query 39272 CAAAGATTTGCATCTTT 39288
| ||||| |||||||||
Sbjct 3006 CGAAGATCTGCATCTTT 3022
>seq964
Length=27231
Score = 87.8 bits (96), Expect = 2e-12
Identities = 165/236 (70%), Gaps = 10/236 (4%)
Strand=Plus/Minus
Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113
|| ||| ||||| | || | ||| | ||| ||||| |||||| || || || || ||
Sbjct 10179 CATGCCACCTCTGAGTCGAAGCACAAGATGCAGCGTAGACTCTTTCTGAATGTTGTAGTC 10120
Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GG 39172
|| || || ||| | || || ||||| || || ||||| || || | ||||||||| ||
Sbjct 10119 AGCTAGCGTGCGTCCATCCTCCAGCTGCTTACCGGCAAAGATGAGCCTCTGCTGGTCCGG 10060
Query 39173 TGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCG-TATC---GCTC 39228
|||| | | |||||| ||| ||| || |||| ||| | || | | || ||||
Sbjct 10059 TGGG-ATACCCTCTTTATCCTGGATCTTAGCCTTGA-CGTTGTCAATGGTGTCTGAGCTC 10002
Query 39229 GACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
|| || |||| ||||| |||| || || || || || ||||||||||||||
Sbjct 10001 ---TCAACCTCCAAAGTGATGGTTTTACCGGTGAGGGTCTTGACAAAGATTTGCAT 9949
>seq806
Length=29032
Score = 87.8 bits (96), Expect = 2e-12
Identities = 152/216 (70%), Gaps = 4/216 (2%)
Strand=Plus/Plus
Query 39081 ATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTG 39140
||| ||||| ||| || || || || || ||||| ||||| || |||| || |||||
Sbjct 17973 ATGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGTGTGCGGCCGTCTTCGAGCTG 18032
Query 39141 TTTGCCCGCAAATATAAGACGCTGCTGGT-CGGTGGGCACGCTCTCTTTGTCCATGATTT 39199
|| || || || || || |||||||||| ||| ||| | || || |||||| ||| |
Sbjct 18033 CTTCCCGGCGAAGATCAGTCGCTGCTGGTCCGGCGGGATCCCT-TCCTTGTCCTGGATCT 18091
Query 39200 TCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCC 39258
| |||| ||| | | | || ||| ||||| || || | || || | || |||
Sbjct 18092 TGGCCTTGA-CGTTGTCGATGGTGTCGGAGGACTCGACCTCGAGGGTTATCGTCTTCCCC 18150
Query 39259 GTCAGCGTTTTAACAAAGATTTGCATCTTTACGCCG 39294
|| || ||||| || ||||| ||||||||| || ||
Sbjct 18151 GTTAGGGTTTTCACGAAGATCTGCATCTTTGCGGCG 18186
>seq3667
Length=14967
Score = 84.2 bits (92), Expect = 2e-11
Identities = 138/199 (69%), Gaps = 0/199 (0%)
Strand=Plus/Plus
Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152
||| || || || || || ||||| || || || |||| || |||||||| || || ||
Sbjct 5530 CTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGCCCGTCCTCGAGCTGTTTCCCGGCGAA 5589
Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212
|| || ||||||||||| | || | || || |||||| ||| || ||||| |
Sbjct 5590 GATCAGCCGCTGCTGGTCCGGAGGGATGCCTTCCTTGTCCTGGATCTTGGCTTTGACATT 5649
Query 39213 CGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAAC 39272
| | || ||| || || || || | ||||| | || ||||| || ||||| ||
Sbjct 5650 GTCGATGGTGTCGGAAGATTCGACCTCGAGGGTGATCGTCTTCCCCGTTAGGGTTTTCAC 5709
Query 39273 AAAGATTTGCATCTTTACG 39291
||||| ||||||||| ||
Sbjct 5710 GAAGATCTGCATCTTTGCG 5728
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429206722348316
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |