Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0 00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq2241 127 2e-24 seq2790 93.3 3e-14 >seq2241 Length=19256 Score = 127 bits (140), Expect = 2e-24 Identities = 194/275 (71%), Gaps = 6/275 (2%) Strand=Plus/Plus Query 29669 TAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGA 29728 || ||||||||||| || | | |||| ||| || || || | || | || ||| Sbjct 1771 TACACGTGAGCATCCCCAATGACATGGATAAAATCACCAGGAACGAGATCACACACATGA 1830 Query 29729 GCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATG 29788 || | |||| | || || ||||||||| || |||||||| ||||| || || ||||| Sbjct 1831 GCTAGCATGCAAGTCAGAAGAGAGTAGGAAGCAATGTTAAACGGCACACCAAGGCCCATA 1890 Query 29789 TCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAAAACTG---A 29845 ||| |||| | ||| || | ||| ||||||||||| || || |||||| ||||| | Sbjct 1891 TCCGCTGAACGCTGATACATCTGACACGAGAGCTCCCCTTCCGCCACGTAGAACTGTGCA 1950 Query 29846 CACATGGCATGGCACGGAGGAAGGGCCATGAGACCCAAGTCTTTGGGGTTCCAGGCACAC 29905 ||||| |||||||||||||| ||||| || | || |||||||| || | Sbjct 1951 AACATG---TGGCACGGAGGAAGCGCCATCAGCTTGAGATCAGAAGGGTTCCAAGCCGAT 2007 Query 29906 ACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGAT 29940 | ||||| |||| || || || |||||| |||| Sbjct 2008 AATATGATACGCCGATCATCAGGATTGTTCTTGAT 2042 >seq2790 Length=17423 Score = 93.3 bits (102), Expect = 3e-14 Identities = 154/221 (70%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 29723 ACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGC 29782 |||||||| | ||| | || || || ||||| || |||||||| || || || || Sbjct 3614 ACGTGAGCTAGAATGCATGTAAGAAGGGAGTAAGAAGCAATGTTAAAAGGTACACCAAGA 3673 Query 29783 CCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAAAAC 29842 ||||| || |||| | ||| || | || |||||||||||||| | ||||| ||| Sbjct 3674 CCCATATCAGCTGAGCGCTGATACATTTGACACGAGAGCTCTCCATTTGCAACGTAGAAC 3733 Query 29843 TG---ACACATGGCATGGCACGGAGGAAGGGCCATGAGACCCAAGTCTTTGGGGTTCCAG 29899 || | ||||| ||||| |||||||| ||||| || | ||| || ||||| Sbjct 3734 TGAGCAAACATG---TGGCATGGAGGAAGCGCCATCAGCTTAAGGTCAGAAGGATTCCAA 3790 Query 29900 GCACACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGAT 29940 || ||| || || |||| || || ||||||||| |||| Sbjct 3791 GCCGACATTATAATCCGCCGATCGTCAGGGTTGTTCTTGAT 3831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405842769220552