Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0 00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq2241 111 1e-19 seq2790 100 2e-16 >seq2241 Length=19256 Score = 111 bits (122), Expect = 1e-19 Identities = 198/288 (69%), Gaps = 6/288 (2%) Strand=Plus/Plus Query 27150 CACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAG 27209 ||||||| | || |||||||| || || | | |||| ||| || || || | || Sbjct 1758 CACGTGAGTTCGATACACGTGAGCATCCCCAATGACATGGATAAAATCACCAGGAACGAG 1817 Query 27210 CCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTAC 27269 | || ||||| | |||| | || || ||||||||| || |||||||| || || Sbjct 1818 ATCACACACATGAGCTAGCATGCAAGTCAGAAGAGAGTAGGAAGCAATGTTAAACGGCAC 1877 Query 27270 CCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTTAC 27329 || || ||||| ||| | || | ||| || | ||||||||||||||| || || || Sbjct 1878 ACCAAGGCCCATATCCGCTGAACGCTGATACATCTGACACGAGAGCTCCCCTTCCGCCAC 1937 Query 27330 GTAAAACTG---ACATATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGG 27386 ||| ||||| | | || ||||||||||||||| ||||| || | || || Sbjct 1938 GTAGAACTGTGCAAACAT---GTGGCACGGAGGAAGCGCCATCAGCTTGAGATCAGAAGG 1994 Query 27387 GTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGAT 27434 |||||| || | | ||||| |||| || || || |||||| |||| Sbjct 1995 GTTCCAAGCCGATAATATGATACGCCGATCATCAGGATTGTTCTTGAT 2042 >seq2790 Length=17423 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 27217 ACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGC 27276 |||||||| | ||| | || || || ||||| || |||||||| ||||| || || Sbjct 3614 ACGTGAGCTAGAATGCATGTAAGAAGGGAGTAAGAAGCAATGTTAAAAGGTACACCAAGA 3673 Query 27277 CCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTTACGTAAAAC 27336 ||||| || | || | ||| || | ||||||||||||||||||| ||||| ||| Sbjct 3674 CCCATATCAGCTGAGCGCTGATACATTTGACACGAGAGCTCTCCATTTGCAACGTAGAAC 3733 Query 27337 TGACATATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCG 27396 ||| | |||||| |||||||| ||||| || | ||| || ||||| || Sbjct 3734 TGAGCAAACATGTGGCATGGAGGAAGCGCCATCAGCTTAAGGTCAGAAGGATTCCAAGCC 3793 Query 27397 CACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGAT 27434 ||| || || |||| || || ||||||||| |||| Sbjct 3794 GACATTATAATCCGCCGATCGTCAGGGTTGTTCTTGAT 3831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369215687917892