Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0
00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters
Query= NC_030842.1
Length=115510
Score E
Sequences producing significant alignments: (Bits) Value
seq2241 111 1e-19
seq2790 100 2e-16
>seq2241
Length=19256
Score = 111 bits (122), Expect = 1e-19
Identities = 198/288 (69%), Gaps = 6/288 (2%)
Strand=Plus/Plus
Query 27150 CACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAG 27209
||||||| | || |||||||| || || | | |||| ||| || || || | ||
Sbjct 1758 CACGTGAGTTCGATACACGTGAGCATCCCCAATGACATGGATAAAATCACCAGGAACGAG 1817
Query 27210 CCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTAC 27269
| || ||||| | |||| | || || ||||||||| || |||||||| || ||
Sbjct 1818 ATCACACACATGAGCTAGCATGCAAGTCAGAAGAGAGTAGGAAGCAATGTTAAACGGCAC 1877
Query 27270 CCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTTAC 27329
|| || ||||| ||| | || | ||| || | ||||||||||||||| || || ||
Sbjct 1878 ACCAAGGCCCATATCCGCTGAACGCTGATACATCTGACACGAGAGCTCCCCTTCCGCCAC 1937
Query 27330 GTAAAACTG---ACATATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGG 27386
||| ||||| | | || ||||||||||||||| ||||| || | || ||
Sbjct 1938 GTAGAACTGTGCAAACAT---GTGGCACGGAGGAAGCGCCATCAGCTTGAGATCAGAAGG 1994
Query 27387 GTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGAT 27434
|||||| || | | ||||| |||| || || || |||||| ||||
Sbjct 1995 GTTCCAAGCCGATAATATGATACGCCGATCATCAGGATTGTTCTTGAT 2042
>seq2790
Length=17423
Score = 100 bits (110), Expect = 2e-16
Identities = 153/218 (70%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 27217 ACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGC 27276
|||||||| | ||| | || || || ||||| || |||||||| ||||| || ||
Sbjct 3614 ACGTGAGCTAGAATGCATGTAAGAAGGGAGTAAGAAGCAATGTTAAAAGGTACACCAAGA 3673
Query 27277 CCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTTACGTAAAAC 27336
||||| || | || | ||| || | ||||||||||||||||||| ||||| |||
Sbjct 3674 CCCATATCAGCTGAGCGCTGATACATTTGACACGAGAGCTCTCCATTTGCAACGTAGAAC 3733
Query 27337 TGACATATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCG 27396
||| | |||||| |||||||| ||||| || | ||| || ||||| ||
Sbjct 3734 TGAGCAAACATGTGGCATGGAGGAAGCGCCATCAGCTTAAGGTCAGAAGGATTCCAAGCC 3793
Query 27397 CACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGAT 27434
||| || || |||| || || ||||||||| ||||
Sbjct 3794 GACATTATAATCCGCCGATCGTCAGGGTTGTTCTTGAT 3831
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 369215687917892
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |