Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0
00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq12321 105 9e-18
seq20848 93.3 6e-14
seq20246 93.3 6e-14
>seq12321
Length=6064
Score = 105 bits (116), Expect = 9e-18
Identities = 374/579 (65%), Gaps = 8/579 (1%)
Strand=Plus/Minus
Query 48141 CATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGA 48200
|| || ||||| || ||||| || || ||||| || | ||||| || || || |||
Sbjct 1387 CAGGCGAAATCGCAGTGAAGCCCCTCGTCTCTCGAGATGAGCTCGTTGGAGAAGGTCAGA 1328
Query 48201 CCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAAT 48260
|| ||||| || ||||| || |||||||| || || | ||| ||| || |||||
Sbjct 1327 CCAGGCATGAGCCCACGCTTCTTGAGCCAGAAGATCGAGCAGAAGCTTCCGGAGAAGAAG 1268
Query 48261 ATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAA--CTG-GCTTCGTTGTGT 48317
|| ||||| ||| || || ||| | ||||| || || ||| | | ||| |
Sbjct 1267 ATCCCTTCGACGCAGGCGAAGGCGACGATCCTCTCCGCGAAAGTCTGAGATCCGTCG--- 1211
Query 48318 ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTA 48377
|||||| ||||| | ||||||||| || || || || || || || ||
Sbjct 1210 ATCCACTTCATGGCCCATTGGGCCTTCTTCGCGACGCAGGGGATGGTCTCGATGGCCCGG 1151
Query 48378 AAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATT 48437
||||| || | || ||| | ||||| | ||| || || | | |||||||||||
Sbjct 1150 AAGAGGTGGTCCCTCTCCTTGTTGTCTTTGATGTAGGTGTCGAGCAGGAGACTATACATC 1091
Query 48438 TCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATC 48497
|| ||||| || || ||||| || ||||| || ||||| || | ||| || | || |
Sbjct 1090 TCTGAGTGGATGTTCTCAATCGCGATCTGGAAGCCGTAGAAGGCACGCGCCTCGGAGACC 1031
Query 48498 TGTACCTCCGTACA-AAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGC 48556
|| || | || ||| || || || | |||||| || || || || || ||
Sbjct 1030 TGGACGT-CGGACATGAACCGGGAGGCGAGATTCTCGAGGACGATCCCGTCGGAGGCGGC 972
Query 48557 AAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTC 48616
|| || || | || ||||| || || | ||| | | || || | ||||||
Sbjct 971 GAAGAAGGCCAGGACGTGTTTGATGAAGTGGCGCTCGCCGTCGTTGAGATTCTCCCAGTC 912
Query 48617 ATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTT 48676
| || || | || ||||| || || ||||| || || || || || || ||
Sbjct 911 GCGTGTGTCGCCGGAGAGGTCGACTTCCTCGGCGGTCCAGAAGGAGGCTTCGGCCTTCTT 852
Query 48677 ATACATATTCCATATATCACTGTATTGGATTGGGAAAAT 48715
||||| | ||| || | ||||||||||||||| ||
Sbjct 851 GTACATCTCCCAGATCTGTGGGTATTGGATTGGGAACAT 813
>seq20848
Length=3109
Score = 93.3 bits (102), Expect = 6e-14
Identities = 143/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218
||||| || || | || | || |||| ||| | || | || |||||||| ||||||
Sbjct 2274 CCTCCTTGGTCAACGTAGCGAGCAGTGTCATTGAATACCCGCAGCATTGGAACAATACCA 2333
Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278
|| |||||||||||||| ||| ||| || ||||| |||| || || || || ||
Sbjct 2334 TTCGATGTTCCATTTGTGCCACGAATGTAGCTTCCTGTTGCACGGATGTTGTGAACAGAA 2393
Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338
| |||||||| || || ||| || | || || ||||||||| || || ||
Sbjct 2394 ACACCTATTCCCCCAGCTGATTTACTAATAACTGCACACTCTTTCAATGTTTCATATATT 2453
Query 78339 CCCTCTATACTGTCATCCATCATG 78362
||||| || || |||||| |||||
Sbjct 2454 CCCTCAATGCTATCATCCTTCATG 2477
>seq20246
Length=3254
Score = 93.3 bits (102), Expect = 6e-14
Identities = 143/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218
||||| || || | || | || |||| ||| | || | || |||||||| ||||||
Sbjct 2442 CCTCCTTGGTCAACGTAGCGAGCAGTGTCATTGAATACCCGCAGCATTGGAACAATACCA 2383
Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278
|| |||||||||||||| ||| ||| || ||||| |||| || || || || ||
Sbjct 2382 TTCGATGTTCCATTTGTGCCACGAATGTAGCTTCCTGTTGCACGGATGTTGTGAACAGAA 2323
Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338
| |||||||| || || ||| || | || || ||||||||| || || ||
Sbjct 2322 ACACCTATTCCCCCAGCTGATTTACTAATAACTGCACACTCTTTCAATGTTTCATATATT 2263
Query 78339 CCCTCTATACTGTCATCCATCATG 78362
||||| || || |||||| |||||
Sbjct 2262 CCCTCAATGCTATCATCCTTCATG 2239
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694106708740480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |