Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0 00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq12321 105 9e-18 seq20848 93.3 6e-14 seq20246 93.3 6e-14 >seq12321 Length=6064 Score = 105 bits (116), Expect = 9e-18 Identities = 374/579 (65%), Gaps = 8/579 (1%) Strand=Plus/Minus Query 48141 CATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGA 48200 || || ||||| || ||||| || || ||||| || | ||||| || || || ||| Sbjct 1387 CAGGCGAAATCGCAGTGAAGCCCCTCGTCTCTCGAGATGAGCTCGTTGGAGAAGGTCAGA 1328 Query 48201 CCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAAT 48260 || ||||| || ||||| || |||||||| || || | ||| ||| || ||||| Sbjct 1327 CCAGGCATGAGCCCACGCTTCTTGAGCCAGAAGATCGAGCAGAAGCTTCCGGAGAAGAAG 1268 Query 48261 ATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAA--CTG-GCTTCGTTGTGT 48317 || ||||| ||| || || ||| | ||||| || || ||| | | ||| | Sbjct 1267 ATCCCTTCGACGCAGGCGAAGGCGACGATCCTCTCCGCGAAAGTCTGAGATCCGTCG--- 1211 Query 48318 ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTA 48377 |||||| ||||| | ||||||||| || || || || || || || || Sbjct 1210 ATCCACTTCATGGCCCATTGGGCCTTCTTCGCGACGCAGGGGATGGTCTCGATGGCCCGG 1151 Query 48378 AAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATT 48437 ||||| || | || ||| | ||||| | ||| || || | | ||||||||||| Sbjct 1150 AAGAGGTGGTCCCTCTCCTTGTTGTCTTTGATGTAGGTGTCGAGCAGGAGACTATACATC 1091 Query 48438 TCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATC 48497 || ||||| || || ||||| || ||||| || ||||| || | ||| || | || | Sbjct 1090 TCTGAGTGGATGTTCTCAATCGCGATCTGGAAGCCGTAGAAGGCACGCGCCTCGGAGACC 1031 Query 48498 TGTACCTCCGTACA-AAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGC 48556 || || | || ||| || || || | |||||| || || || || || || Sbjct 1030 TGGACGT-CGGACATGAACCGGGAGGCGAGATTCTCGAGGACGATCCCGTCGGAGGCGGC 972 Query 48557 AAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTC 48616 || || || | || ||||| || || | ||| | | || || | |||||| Sbjct 971 GAAGAAGGCCAGGACGTGTTTGATGAAGTGGCGCTCGCCGTCGTTGAGATTCTCCCAGTC 912 Query 48617 ATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTT 48676 | || || | || ||||| || || ||||| || || || || || || || Sbjct 911 GCGTGTGTCGCCGGAGAGGTCGACTTCCTCGGCGGTCCAGAAGGAGGCTTCGGCCTTCTT 852 Query 48677 ATACATATTCCATATATCACTGTATTGGATTGGGAAAAT 48715 ||||| | ||| || | ||||||||||||||| || Sbjct 851 GTACATCTCCCAGATCTGTGGGTATTGGATTGGGAACAT 813 >seq20848 Length=3109 Score = 93.3 bits (102), Expect = 6e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 ||||| || || | || | || |||| ||| | || | || |||||||| |||||| Sbjct 2274 CCTCCTTGGTCAACGTAGCGAGCAGTGTCATTGAATACCCGCAGCATTGGAACAATACCA 2333 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 || |||||||||||||| ||| ||| || ||||| |||| || || || || || Sbjct 2334 TTCGATGTTCCATTTGTGCCACGAATGTAGCTTCCTGTTGCACGGATGTTGTGAACAGAA 2393 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 | |||||||| || || ||| || | || || ||||||||| || || || Sbjct 2394 ACACCTATTCCCCCAGCTGATTTACTAATAACTGCACACTCTTTCAATGTTTCATATATT 2453 Query 78339 CCCTCTATACTGTCATCCATCATG 78362 ||||| || || |||||| ||||| Sbjct 2454 CCCTCAATGCTATCATCCTTCATG 2477 >seq20246 Length=3254 Score = 93.3 bits (102), Expect = 6e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 ||||| || || | || | || |||| ||| | || | || |||||||| |||||| Sbjct 2442 CCTCCTTGGTCAACGTAGCGAGCAGTGTCATTGAATACCCGCAGCATTGGAACAATACCA 2383 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 || |||||||||||||| ||| ||| || ||||| |||| || || || || || Sbjct 2382 TTCGATGTTCCATTTGTGCCACGAATGTAGCTTCCTGTTGCACGGATGTTGTGAACAGAA 2323 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 | |||||||| || || ||| || | || || ||||||||| || || || Sbjct 2322 ACACCTATTCCCCCAGCTGATTTACTAATAACTGCACACTCTTTCAATGTTTCATATATT 2263 Query 78339 CCCTCTATACTGTCATCCATCATG 78362 ||||| || || |||||| ||||| Sbjct 2262 CCCTCAATGCTATCATCCTTCATG 2239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694106708740480