Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0 00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq549 105 1e-17 seq12321 104 3e-17 >seq549 Length=32968 Score = 105 bits (116), Expect = 1e-17 Identities = 231/342 (68%), Gaps = 8/342 (2%) Strand=Plus/Minus Query 46630 CATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGC 46689 || || || || || || |||||||| ||||| || | ||||| || || ||||| Sbjct 20339 CACGCGAAGTCGCAGTGGAGGCCTTCGTCTCTCGAGATCAGCTCGTTGGAGAAGGTGAGA 20280 Query 46690 CCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGAT-CCAGAAAAGAA 46748 || ||||| || |||||||| || ||||| || || | || ||| | || || ||||| Sbjct 20279 CCCGGCATGAGCCCACGCTTCTTCAGCCAGAAGATCGA-GCAGAAGCTGCCCGAGAAGAA 20221 Query 46749 TATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATT---ATG 46805 || ||||| || ||||| || || | ||||| || | ||| | | || Sbjct 20220 GATCCCTTCCACGCAAGCGAACGCCACGATCCTCTCGGCGAA---GGCCTGAGGCCCATC 20164 Query 46806 AATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATT 46865 |||||| | ||||| | |||||||||||||| ||||| || || || || || Sbjct 20163 GATCCACTTCAAGGCCCATTGGGCCTTTTTCTTTACGCAAGGGATCGTCTCGATCGCGCG 20104 Query 46866 AAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACAT 46925 |||||| || | || | | ||||| | || || |||| | ||||| ||||| Sbjct 20103 GAAGAGATGGTCCCTCTCCTTGTTGTCTTTGATGTAAGTGTCTAAGAGGAGACTGTACAT 20044 Query 46926 TTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAA 46967 || || || ||||| || || || ||||| || ||||| || Sbjct 20043 CTCGGAGTGGATGTTCTCGATCGCGATCTGGAAGCCGTAGAA 20002 >seq12321 Length=6064 Score = 104 bits (114), Expect = 3e-17 Identities = 228/340 (67%), Gaps = 4/340 (1%) Strand=Plus/Minus Query 46630 CATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGC 46689 || || ||||| || ||||| || || ||||| || | ||||| || || || || Sbjct 1387 CAGGCGAAATCGCAGTGAAGCCCCTCGTCTCTCGAGATGAGCTCGTTGGAGAAGGTCAGA 1328 Query 46690 CCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAAT 46749 |||||||| || |||||||| |||||||| || || | ||| ||| || ||||| Sbjct 1327 CCAGGCATGAGCCCACGCTTCTTGAGCCAGAAGATCGAGCAGAAGCTTCCGGAGAAGAAG 1268 Query 46750 ATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAA--CTGGCATCATTATGAA 46807 || ||||| || ||||| ||||| | ||||| || || ||| ||| | | Sbjct 1267 ATCCCTTCGACGCAGGCGAAGGCGACGATCCTCTCCGCGAAAGTCTGAGATCCGTCG--A 1210 Query 46808 TCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAA 46867 ||||| | ||||| | ||||| ||| || || || || || || || || | Sbjct 1209 TCCACTTCATGGCCCATTGGGCCTTCTTCGCGACGCAGGGGATGGTCTCGATGGCCCGGA 1150 Query 46868 AGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTT 46927 |||| || | || | | ||||| | || || || | | ||||||||||| | Sbjct 1149 AGAGGTGGTCCCTCTCCTTGTTGTCTTTGATGTAGGTGTCGAGCAGGAGACTATACATCT 1090 Query 46928 CTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAA 46967 |||| || ||||| ||||| || ||||| || ||||| || Sbjct 1089 CTGAGTGGATGTTCTCAATCGCGATCTGGAAGCCGTAGAA 1050 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712357529130240