Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0
00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq549 105 1e-17
seq12321 104 3e-17
>seq549
Length=32968
Score = 105 bits (116), Expect = 1e-17
Identities = 231/342 (68%), Gaps = 8/342 (2%)
Strand=Plus/Minus
Query 46630 CATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGC 46689
|| || || || || || |||||||| ||||| || | ||||| || || |||||
Sbjct 20339 CACGCGAAGTCGCAGTGGAGGCCTTCGTCTCTCGAGATCAGCTCGTTGGAGAAGGTGAGA 20280
Query 46690 CCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGAT-CCAGAAAAGAA 46748
|| ||||| || |||||||| || ||||| || || | || ||| | || || |||||
Sbjct 20279 CCCGGCATGAGCCCACGCTTCTTCAGCCAGAAGATCGA-GCAGAAGCTGCCCGAGAAGAA 20221
Query 46749 TATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATT---ATG 46805
|| ||||| || ||||| || || | ||||| || | ||| | | ||
Sbjct 20220 GATCCCTTCCACGCAAGCGAACGCCACGATCCTCTCGGCGAA---GGCCTGAGGCCCATC 20164
Query 46806 AATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATT 46865
|||||| | ||||| | |||||||||||||| ||||| || || || || ||
Sbjct 20163 GATCCACTTCAAGGCCCATTGGGCCTTTTTCTTTACGCAAGGGATCGTCTCGATCGCGCG 20104
Query 46866 AAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACAT 46925
|||||| || | || | | ||||| | || || |||| | ||||| |||||
Sbjct 20103 GAAGAGATGGTCCCTCTCCTTGTTGTCTTTGATGTAAGTGTCTAAGAGGAGACTGTACAT 20044
Query 46926 TTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAA 46967
|| || || ||||| || || || ||||| || ||||| ||
Sbjct 20043 CTCGGAGTGGATGTTCTCGATCGCGATCTGGAAGCCGTAGAA 20002
>seq12321
Length=6064
Score = 104 bits (114), Expect = 3e-17
Identities = 228/340 (67%), Gaps = 4/340 (1%)
Strand=Plus/Minus
Query 46630 CATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGC 46689
|| || ||||| || ||||| || || ||||| || | ||||| || || || ||
Sbjct 1387 CAGGCGAAATCGCAGTGAAGCCCCTCGTCTCTCGAGATGAGCTCGTTGGAGAAGGTCAGA 1328
Query 46690 CCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAAT 46749
|||||||| || |||||||| |||||||| || || | ||| ||| || |||||
Sbjct 1327 CCAGGCATGAGCCCACGCTTCTTGAGCCAGAAGATCGAGCAGAAGCTTCCGGAGAAGAAG 1268
Query 46750 ATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAA--CTGGCATCATTATGAA 46807
|| ||||| || ||||| ||||| | ||||| || || ||| ||| | |
Sbjct 1267 ATCCCTTCGACGCAGGCGAAGGCGACGATCCTCTCCGCGAAAGTCTGAGATCCGTCG--A 1210
Query 46808 TCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAA 46867
||||| | ||||| | ||||| ||| || || || || || || || || |
Sbjct 1209 TCCACTTCATGGCCCATTGGGCCTTCTTCGCGACGCAGGGGATGGTCTCGATGGCCCGGA 1150
Query 46868 AGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTT 46927
|||| || | || | | ||||| | || || || | | ||||||||||| |
Sbjct 1149 AGAGGTGGTCCCTCTCCTTGTTGTCTTTGATGTAGGTGTCGAGCAGGAGACTATACATCT 1090
Query 46928 CTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAA 46967
|||| || ||||| ||||| || ||||| || ||||| ||
Sbjct 1089 CTGAGTGGATGTTCTCAATCGCGATCTGGAAGCCGTAGAA 1050
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 712357529130240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |