Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0 00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters Query= NC_031761.1 Length=131855 Score E Sequences producing significant alignments: (Bits) Value seq1703 84.2 2e-11 >seq1703 Length=21771 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| || |||||||| || ||||| || || || ||||| |||| ||| | | Sbjct 18594 ATGCAGATCTTTGTCAAGACTTTGACTGGAAAGACTATTACTTTGGAGGTGGAGAGCTCC 18535 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTC-GATCA 111218 ||| || ||| | | || || || ||| || || ||||| | |||| | || || Sbjct 18534 GATACTATTGACAATGTCAAGGCTAAGATTCAGGATAAGGAAGG-GATCCCACCTGACCA 18476 Query 111219 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111278 || ||| | || | ||| || || || ||||| ||| | ||| | || || || || Sbjct 18475 GCAGAGGTTGATCTTTGCCGGGAAGCAGTTGGAGGATGGGAGGACTCTTGCTGACTACAA 18416 Query 111279 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111328 || || ||||||||||| || || || || |||||||| || || |||| Sbjct 18415 CATCCAGAAAGAATCTACGCTTCACTTGGTCTTGCGTCTACGTGGAGGCA 18366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421478424180832