Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0
00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters
Query= NC_031761.1
Length=131855
Score E
Sequences producing significant alignments: (Bits) Value
seq1703 84.2 2e-11
>seq1703
Length=21771
Score = 84.2 bits (92), Expect = 2e-11
Identities = 158/230 (69%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159
||||| || |||||||| || ||||| || || || ||||| |||| ||| | |
Sbjct 18594 ATGCAGATCTTTGTCAAGACTTTGACTGGAAAGACTATTACTTTGGAGGTGGAGAGCTCC 18535
Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTC-GATCA 111218
||| || ||| | | || || || ||| || || ||||| | |||| | || ||
Sbjct 18534 GATACTATTGACAATGTCAAGGCTAAGATTCAGGATAAGGAAGG-GATCCCACCTGACCA 18476
Query 111219 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111278
|| ||| | || | ||| || || || ||||| ||| | ||| | || || || ||
Sbjct 18475 GCAGAGGTTGATCTTTGCCGGGAAGCAGTTGGAGGATGGGAGGACTCTTGCTGACTACAA 18416
Query 111279 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111328
|| || ||||||||||| || || || || |||||||| || || ||||
Sbjct 18415 CATCCAGAAAGAATCTACGCTTCACTTGGTCTTGCGTCTACGTGGAGGCA 18366
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 421478424180832
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |