Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0 00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq6139 554 5e-153 seq43812 417 1e-111 seq18917 232 8e-56 seq12239 199 5e-46 seq4821 104 3e-17 seq10427 100 3e-16 seq10249 95.1 1e-14 seq293 89.7 6e-13 >seq6139 Length=10899 Score = 554 bits (614), Expect = 5e-153 Identities = 733/1014 (72%), Gaps = 2/1014 (0%) Strand=Plus/Plus Query 178839 TTTGATGTACTCGATGACTGGCTTAAGCGTGATCGGTTCGTTTTTGTTGGTTGGTCAGGT 178898 |||||| | | ||||||||| | | | || || ||||||||||| |||||||| ||| Sbjct 5076 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGT 5135 Query 178899 CTTCTTCTGTTCCCTACTGCTTACATGGCACTGGGCGGTTGGCTCACGGGCACAACATTC 178958 || | || || ||| ||| || | || |||| |||||| |||| || ||||| || Sbjct 5136 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTGGGGGGTTGGTTCACAGGTACAACCTTT 5195 Query 178959 GTCACCTCGTGGTATACTCACGGGATTGCTTCTTCGTATCTTGAGGGATGTAATTTCCTT 179018 || || || ||||||||||| || | ||| ||| ||| | || || || ||||| | Sbjct 5196 GTAACTTCATGGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTA 5255 Query 179019 ACTGCTGCTGTATCAACTCCTGCTGACGCTCTCGGACATTCCCTACTTCTTCTATGGGGT 179078 || ||||| || || ||||||||| | | | | ||||| | | | || |||||| Sbjct 5256 ACCGCTGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGGGGT 5315 Query 179079 CCAGAAGCTCAGGGAGATTTCGTCCGCTGGCTCCAACTTGGGGGACTATGGCCTTTTGTG 179138 || ||||| || |||||||| || ||| ||| | || || || ||| ||||||| Sbjct 5316 CCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTGTT 5375 Query 179139 GCGCTCCACGGTGCCTTCGCTCTCATAGGTTTCATGCTTCGGCAGTTTGAAATCGCACG- 179197 || ||||||||||| ||||| | |||||||| ||| | || || |||||| | || || Sbjct 5376 GCTCTCCACGGTGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGA 5435 Query 179198 TCTAGTCGGTATTCGTCCTTACAATGCAATCGCGTTTTCTGGTCCAATTGCTGTCTTTGT 179257 ||| || | | || ||||| ||||||||||| || ||||||||||||||||| ||||| Sbjct 5436 TCTGTTCAAT-TGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGT 5494 Query 179258 GTCTGTTTTTCTCATGTATCCTCTCGGACAGTCCTCGTGGTTCTTTGCGCCGTCGTTTGG 179317 ||||| ||||| || ||||| || || || || |||||||||||||| ||||| Sbjct 5495 TTCTGTCTTTCTAATTTATCCACTAGGTCAATCGGGTTGGTTCTTTGCGCCTAGTTTTGG 5554 Query 179318 AGTTGCAGCGATTTTCCGCTTCCTACTCTTCCTACAGGGCTTCCACAACTGGACGCTCAA 179377 || || || || || || ||| | ||||| | || || || || || ||||| | || Sbjct 5555 TGTAGCGGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAA 5614 Query 179378 CCCGTTCCACATGATGGGTGTAGCAGGTATCCTGGGCGGAGCATTGCTTTGTGCCATTCA 179437 ||| || || |||||||| || || ||| | ||||||| || || | || || ||||| Sbjct 5615 CCCATTTCATATGATGGGAGTCGCTGGTGTACTGGGCGCGGCTCTGTTATGCGCTATTCA 5674 Query 179438 TGGTGCTACAGTAGAGAACACACTCTTTGAAGACAGTGACCAATCAAATACATTCAAGGC 179497 ||||||||| ||||| || || | |||||||| |||| ||||||||||| || Sbjct 5675 TGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGC 5734 Query 179498 ATTCGAGCCTACACAAGAAGAGGAGACCTATTCGATGGTTACTGCCAACCGTTTCTGGTC 179557 || | || || |||| || || || ||||| ||||| || || ||||| || ||||| Sbjct 5735 TTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTC 5794 Query 179558 TCAGATCTTTGGTATCGCCTTCAGCAATAAGCGTTGGCTACATTTCTTTATGTTGTTTGT 179617 || |||||||| | || || |||||| |||||| |||||||||||||||| ||||| Sbjct 5795 ACAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGT 5854 Query 179618 TCCTGTCATGGGTCTTTGGACCTCTAGCATTGGTATTATTGGTCTTGCACTTAACCTTAG 179677 || || | ||| | |||| | |||| | | ||||| || | ||||| | Sbjct 5855 ACCAGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCTTTGAACCTACG 5914 Query 179678 AGCTTATGACTTTGTTTCACAAGAGATCAGAGCGGCAGAGGATCCTGAGTTCGAGACGTT 179737 || |||||||| ||||| || || ||| | || || || ||||| || || ||||| || Sbjct 5915 TGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTT 5974 Query 179738 CTATACCAAGAACATCCTATTGAATGAAGGTCTACGTGCTTGGATGGCACCAGTCGATCA 179797 |||||| || || || || || || |||||| | || ||||||||||| | ||||| Sbjct 5975 CTATACTAAAAATATTCTTTTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGATCA 6034 Query 179798 ACCACATGAAAACTTTGTATTTCCTGAAGAAGTATTGCCAAGAGGCAACGCTCT 179851 || ||||||||| || |||| ||||| || || | ||| | || |||||||| Sbjct 6035 GCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 6088 >seq43812 Length=736 Score = 417 bits (462), Expect = 1e-111 Identities = 439/575 (76%), Gaps = 2/575 (0%) Strand=Plus/Plus Query 178016 CTGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCTATGCCCCTGGGTA 178075 |||| ||| | | || || | |||||||| ||| ||||| | |||||| || || | Sbjct 1 CTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAA 60 Query 178076 TCAGTGGCACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACC 178135 || ||| || ||||||| ||| |||| ||||| || ||||||||||| || ||||||| Sbjct 61 TCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACC 120 Query 178136 CCTTCCACATGTTGGGCGTCGCTGGTGTCTTTGGTGGTTCTCTGTTCAGTGCGATGCACG 178195 | || |||||||| || || |||||||| || || || || || || ||||| ||||| | Sbjct 121 CATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATG 180 Query 178196 GTTCTCTGGTTACTTCCTCGCTGGTTC-GTGAAACCACCGAGAACGAAAGTCAGAACTAT 178254 ||||| |||| |||| || | | | || | |||||||| || || ||| | || | Sbjct 181 GTTCTTTGGTAACTT-CTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAA 239 Query 178255 GGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCTCATGGTTACTTC 178314 || |||| ||||||||||||||||| || |||||||| || |||||||| ||||| || Sbjct 240 GGGTACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTT 299 Query 178315 GGTCGCCTGATCTTCCAATACGCATCCTTCAACAACTCCCGTTCGCTGCACTTCTTCCTC 178374 || || ||||||||||||| || |||||||| || ||||| | || |||||| | Sbjct 300 GGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTA 359 Query 178375 GCAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTC 178434 || || ||||| || || ||||| ||||| |||||| | ||| |||| || ||||| ||| Sbjct 360 GCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTC 419 Query 178435 AACCTCAACGGTTTCAACTTCAACCAGTCCATCATGGATAGTCAGGGCAAAGTCCTGAAC 178494 ||||| || |||||||| |||||||| || | | |||||||| || || | || Sbjct 420 AACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAAT 479 Query 178495 ACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGTATGGAAGTCATGCACGAGCGTAAT 178554 || ||||| || || | ||||||||| |||||||||||||| ||||| || |||||| Sbjct 480 ACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 539 Query 178555 GCTCACAACTTCCCTCTTGACCTCGCTGCTGCTGA 178589 ||||||||||||||||| ||||| ||||||| ||| Sbjct 540 GCTCACAACTTCCCTCTAGACCTAGCTGCTGTTGA 574 >seq18917 Length=3610 Score = 232 bits (256), Expect = 8e-56 Identities = 299/413 (72%), Gaps = 0/413 (0%) Strand=Plus/Plus Query 177598 TTCTGTAACTGGGTAACCTCCACCAACAATCGTCTGTATGTCGGTTGGTTCGGTGTCCTG 177657 |||||||||||| |||| ||| | || ||||| || | || ||||| ||||| || Sbjct 3193 TTCTGTAACTGGATAACTAGTACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 3252 Query 177658 ATGATCCCTACGCTGCTCGCTGCTGCTATCTGTTTCATCGTCGCTTTCGTCGCTGCTCCT 177717 ||||| ||||| | | | || || | ||| || |||| ||| | ||||||||| Sbjct 3253 ATGATTCCTACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCCT 3312 Query 177718 CCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCCCTGATGTATGGCAACAAC 177777 || || || || || || || |||||||| || |||| || || | || || ||||| Sbjct 3313 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAAT 3372 Query 177778 ATCATTTCTGGTGCTGTTGTTCCTTCTTCTAACGCTATTGGTCTCCACTTCTATCCCATC 177837 || ||||| ||||| || ||||| ||||| ||||||||| | || || ||||| ||| Sbjct 3373 ATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTATCCGATC 3432 Query 177838 TGGGAAGCAGCTTCTCTCGATGAGTGGCTCTACAATGGTGGTCCTTTCCAACTCGTTATC 177897 |||||||| || || | ||||| ||||| ||||| |||||||||| |||| || | Sbjct 3433 TGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGTGGTCCTTATGAACTAATTGTT 3492 Query 177898 TTCCACTTCCTGATCGGTATCTATGCATACATGGGTCGTGAGTGGGAACTTTCTTACCGC 177957 | ||||| | | ||| | | || ||||||||||||||||||||| || ||| Sbjct 3493 CTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGT 3552 Query 177958 CTAGGTATGCGTCCCTGGATCTGTGTAGCATACTCTGCTCCAGTCGCCGCAGC 178010 || ||||||||||| ||||| ||| ||||| || ||||| || || || || Sbjct 3553 CTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGC 3605 >seq12239 Length=6102 Score = 199 bits (220), Expect = 5e-46 Identities = 382/558 (68%), Gaps = 4/558 (1%) Strand=Plus/Minus Query 178839 TTTGATGTACTCGATGACTGGCTTAAGCGTGATCGGTTCGTTTTTGTTGGTTGGTCAGGT 178898 |||||| | | ||||||||| | | | || || ||||||||||| |||||||| ||| Sbjct 623 TTTGATATTATTGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGT 564 Query 178899 CTTCTTCTGTTCCCTACTGCTTACATGGCACTGGGCGGTTGGCTCACGGGCACAACATTC 178958 || | || || ||| ||| || | || |||| |||||| |||| || ||||| || Sbjct 563 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTGGGGGGTTGGTTCACAGGTACAACCTTT 504 Query 178959 GTCACCTCGTGGTATACTCACGGGATTGCTTCTTCGTATCTTGAGGGATGTAATTTCCTT 179018 || || || ||||||| ||| || | ||| || ||| | || || || | | | | Sbjct 503 GTAACTTCATGGTATATTCATGGATTGGCTAGTTTCTATTTAGAAGGTTGCAGTCTTTTA 444 Query 179019 ACTGCTGCTGTATCAACTCCTGCTGACGCTCTCGGACATTCCCTACTTCTTCTATGGGGT 179078 || | ||| || || ||||||||| | | | | ||||| | | | || | |||| Sbjct 443 ACCGATGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTATTACTGT-GGGT 385 Query 179079 CCAGAAGCTCAGGGAGATTTCGTCCGCTGGCTCCAACTTGGGGGACTATGGCCTTTTGTG 179138 | ||||| || |||||||| || ||| ||| | || || ||| |||||| Sbjct 384 CATGAAGCACAAGGAGATTTTAGTCGTTGGTGTCAATTAAACGGCCTGTGGGTTTTTGTT 325 Query 179139 GCGCTCCACGGTGCCTTCGCTCTCATAGGTTTCATGCTTCGGCAGTTTGAAATCGCACG- 179197 | |||||| |||| ||||| | |||||||| ||| | || || |||||| | || || Sbjct 324 TCTCTCCACAGTGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGA 265 Query 179198 TCTAGTCGGTATTCGTCCTTACAATGCAATCGCGTTTTCTGGTCCAATTGCTGTCTTTGT 179257 ||| || | | | ||||| ||||||||||| || |||||||||||||||| ||| | Sbjct 264 TCTGTTCAAT-TGTGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGGTTTTAT 206 Query 179258 GTCTGTTTTTCTCATGTATCCTCTCGGACAGTCCTCGTGGTTCTTTGCGCCGTCGTTTGG 179317 ||| ||||| || ||||||| || || || ||||||||||| || ||||| Sbjct 205 TCCTGCCTTTCTAATTTATCCTC-AGGTCAATCTGGTTGGTTCTTTGCACCTAGTTTTGG 147 Query 179318 AGTTGCAGCGATTTTCCGCTTCCTACTCTTCCTACAGGGCTTCCACAACTGGACGCTCAA 179377 || || | || || || ||| | ||||| | || | || | || ||||| | || Sbjct 146 TGTAGCGGTTATATTTCGGTTCATCCTCTTTTTCCAAGAGTTTTATAATTGGACATTGAA 87 Query 179378 CCCGTTCCACATGATGGG 179395 || | || |||||||| Sbjct 86 CCATCTACATATGATGGG 69 >seq4821 Length=12785 Score = 104 bits (114), Expect = 3e-17 Identities = 164/235 (70%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 176152 TTGAGTGTGCTGACGATCAGTATATTCTGGATGCTGCTGAGGAAGCAGGAGTTGAACTCA 176211 ||||||| | ||||| || | || || |||||||||||||||||| |||| | Sbjct 11202 TTGAGTGCGACGACGACGTCTACGTCCTCGACGCTGCTGAGGAAGCAGGAATTGACTTGC 11143 Query 176212 ACTACTCGTGCCGCGCTGGTGCCTGTTCGAGTTGTGCAGGAAAACTCATCTCGGGCACGG 176271 ||||| ||||| |||||| | || ||||| ||||| || ||| | | || || | | Sbjct 11142 CTTACTCTTGCCGTGCTGGTTCTTGCTCGAGCTGTGCCGGTAAAGTTGTGTCTGGATCTG 11083 Query 176272 TAGATCAAAGCGATCAATCGTTCCTTGATGATGACCAGATCGATGCAGGTTTCATTCTGA 176331 | || || || || ||||| |||||||||||||| | || ||| ||| |||| | Sbjct 11082 TTGACCAGTCTGACCAGAGTTTCCTCGATGATGACCAGATTGCTGAAGGATTCGTTCTCA 11023 Query 176332 CTTGTGTTTCATATCCTACGAGCGATTGTGTGATTGAGACTGAGAAAGAAGAGGA 176386 |||||| | |||||||| ||| | |||||||| | | |||||| || Sbjct 11022 CTTGTGCGGCTTATCCTACTTCTGATGTTACCATTGAGACCCACAGAGAAGAAGA 10968 >seq10427 Length=7142 Score = 100 bits (110), Expect = 3e-16 Identities = 163/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 176152 TTGAGTGTGCTGACGATCAGTATATTCTGGATGCTGCTGAGGAAGCAGGAGTTGAACTCA 176211 ||||||| | ||||| || | || || |||||||||||||||||| | || | Sbjct 1538 TTGAGTGCGACGACGACGTCTACGTCCTCGACGCTGCTGAGGAAGCAGGAATCGACTTGC 1479 Query 176212 ACTACTCGTGCCGCGCTGGTGCCTGTTCGAGTTGTGCAGGAAAACTCATCTCGGGCACGG 176271 ||||| ||||| |||||| | || ||||| ||||| || ||| | | || || | | Sbjct 1478 CTTACTCTTGCCGTGCTGGTTCTTGCTCGAGCTGTGCCGGTAAAGTTGTGTCTGGATCAG 1419 Query 176272 TAGATCAAAGCGATCAATCGTTCCTTGATGATGACCAGATCGATGCAGGTTTCATTCTGA 176331 | || || || || ||||| |||||||||||||| | || ||| ||| |||| | Sbjct 1418 TTGACCAGTCTGACCAGAGTTTCCTCGATGATGACCAGATTGCTGAAGGATTCGTTCTCA 1359 Query 176332 CTTGTGTTTCATATCCTACGAGCGATTGTGTGATTGAGACTGAGAAAGAAGAGGA 176386 |||||| | |||||||| ||| | |||||||| | | |||||| || Sbjct 1358 CTTGTGCGGCTTATCCTACTTCTGATGTTACCATTGAGACCCACAGAGAAGAAGA 1304 >seq10249 Length=7246 Score = 95.1 bits (104), Expect = 1e-14 Identities = 162/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 176152 TTGAGTGTGCTGACGATCAGTATATTCTGGATGCTGCTGAGGAAGCAGGAGTTGAACTCA 176211 ||||||| | ||||| || | || || ||||| ||||||||||| | || | Sbjct 5618 TTGAGTGCGACGACGACGTTTACGTCCTCGACGCTGCGGAGGAAGCAGGGATCGACTTGC 5677 Query 176212 ACTACTCGTGCCGCGCTGGTGCCTGTTCGAGTTGTGCAGGAAAACTCATCTCGGGCACGG 176271 ||||| ||||| || ||| | || ||||| || ||||| ||| | | || || || | Sbjct 5678 CTTACTCTTGCCGTGCCGGTTCTTGCTCGAGCTGCGCAGGTAAAGTTGTGTCTGGTACCG 5737 Query 176272 TAGATCAAAGCGATCAATCGTTCCTTGATGATGACCAGATCGATGCAGGTTTCATTCTGA 176331 | || || || || ||||| |||||||||||||| | || ||| ||| |||| | Sbjct 5738 TTGACCAGTCTGACCAGAGTTTCCTCGATGATGACCAGATTGCTGAAGGATTCGTTCTCA 5797 Query 176332 CTTGTGTTTCATATCCTACGAGCGATTGTGTGATTGAGACTGAGAAAGAAGAGGA 176386 |||||| | |||||||| ||| | |||||||| | |||||||| || Sbjct 5798 CTTGTGCGGCTTATCCTACTTCTGATGTTACCATTGAGACCCACAAAGAAGAAGA 5852 >seq293 Length=39549 Score = 89.7 bits (98), Expect = 6e-13 Identities = 134/189 (71%), Gaps = 1/189 (1%) Strand=Plus/Plus Query 177686 TCTGTTTC-ATCGTCGCTTTCGTCGCTGCTCCTCCTGTGGACATCGACGGCATCCGTGAA 177744 ||||||| || |||| ||| | ||||||||| || || || | || || ||||| Sbjct 25995 TCTGTTTTTATTATCGCATTCATTGCTGCTCCTTTAGTAGATATTGGTGGTATTTGTGAA 26054 Query 177745 CCCGTCGCTGGTTCCCTGATGTATGGCAACAACATCATTTCTGGTGCTGTTGTTCCTTCT 177804 || | || | | || | ||||| ||| | || ||||| ||||| || ||| | || Sbjct 26055 CCTATTTCTCGATATCTTCTTTATGGAAACGATATTATTTCAGGTGCCATTATTCATACT 26114 Query 177805 TCTAACGCTATTGGTCTCCACTTCTATCCCATCTGGGAAGCAGCTTCTCTCGATGAGTGG 177864 |||| ||||||||| | || || ||| | ||||||||||| || | | | | ||| ||| Sbjct 26115 TCTACAGCTATTGGTTTGCATTTTTATTCAATCTGGGAAGCTGCATTTGTTGGTGAATGG 26174 Query 177865 CTCTACAAT 177873 || |||||| Sbjct 26175 CTATACAAT 26183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595824698029120