Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0
00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters
Query= NC_031944.1
Length=185102
Score E
Sequences producing significant alignments: (Bits) Value
seq6139 518 4e-142
seq43812 410 1e-109
seq18917 208 9e-49
seq12239 149 7e-31
seq14 93.3 5e-14
seq10427 84.2 3e-11
seq4821 84.2 3e-11
>seq6139
Length=10899
Score = 518 bits (574), Expect = 4e-142
Identities = 722/1009 (72%), Gaps = 2/1009 (0%)
Strand=Plus/Plus
Query 170605 TGGATGACTGGCTTAAACGTGATCGGTTTGTATTTGTGGGCTGGTCTGGACTTCTTCTTT 170664
||||||||||| | | || || || || ||||| || |||||||| || | || |
Sbjct 5086 TGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCT 5145
Query 170665 TTCCCACTGCTTATCTTGCAATTGGCGGCTGGCTTACGGGCACGACATTTGTTACAAGTT 170724
|||| ||| ||| | || | || || ||| | || || || || ||||| || |
Sbjct 5146 TTCCTTGTGCCTATTTCGCTTTGGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCAT 5205
Query 170725 GGTACACCCACGGACTTGCAAGTTCGTACCTTGAAGGTGCTAATTTCCTTACAGCGGCTG 170784
|||| || || ||| | || ||||| || | |||||| ||||| | || || || |
Sbjct 5206 GGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCAG 5265
Query 170785 TGTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTC 170844
| || || |||||| || | | | |||||| | | |||| ||||||||||| | |
Sbjct 5266 TTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGGGGTCCTGAAGCAC 5325
Query 170845 AGGGGGATTTCCAACGCTGGTTACAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCACG 170904
| || ||||| || |||| ||| | || || || ||| |||||| || |||||||
Sbjct 5326 AAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTGTTGCTCTCCACG 5385
Query 170905 GAGCCTTTGCTCTCATAGGTTTCATGCTTCGGCAGTTTGAAATCAGTCG-TCTCGTAGGG 170963
| || || || | |||||||| ||| | || || |||||| | ||| ||| ||
Sbjct 5386 GTGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGATCT-GTTCAA 5444
Query 170964 ATTAGACCGTACAATGCAATCGCTTTCTCTGGTCCTATCGCTGTGTTTGTCAGCGTGTTC 171023
| |||| || ||||||||||| ||||||||||| || ||||| ||||| || ||
Sbjct 5445 TTGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTCTTT 5504
Query 171024 CTCATCTATCCTCTTGGGCAGTCAAGTTGGTTCTTCGCACCTTCCTTTGGAGTTGCAGCA 171083
|| || ||||| || || || || |||||||||| || ||| ||||| || || ||
Sbjct 5505 CTAATTTATCCACTAGGTCAATCGGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCT 5564
Query 171084 ATCTTCCGCTTCCTGCTCTTCCTGCAAGGTTTCCACAACTGGACACTGAATCCATTTCAT 171143
|| || || ||| | ||||| | ||||| || || || |||||| |||| |||||||||
Sbjct 5565 ATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCAT 5624
Query 171144 ATGATGGGTGTTGCAGGTATCCTCGGCGGTGCATTGCTTTCTGCAATTCATGGTGTTACA 171203
|||||||| || || ||| | || |||| || || | | || |||||||||| |||
Sbjct 5625 ATGATGGGAGTCGCTGGTGTACTGGGCGCGGCTCTGTTATGCGCTATTCATGGTGCTACT 5684
Query 171204 GTAGAGAATACTTTGTATGAAGATGGTGATCAAGCAAACACCTTTAAGGCATTTGACACG 171263
||||| |||||||| | ||||||||||||| ||||| || || || ||| || |
Sbjct 5685 GTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCA 5744
Query 171264 ACTCAGGAGGAAGAGACATATTCTATGGTCACTGCTAATCGTTTCTGGTCGCAGATTTTT 171323
||||| | ||||| || ||||| |||||||| ||||| || || ||||| || || |||
Sbjct 5745 ACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTT 5804
Query 171324 GGTATCGCGTTCAGCAATAAGCGTTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTCATG 171383
|| | || || |||||| |||||||| |||||||||||| | ||||| || || |
Sbjct 5805 GGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACT 5864
Query 171384 GGTCTTTGGGTCAGTAGTCTGGGGATTATTGGTCTTGCTCTTAATCTTAGGGCTTATGAT 171443
||| | ||| | ||| ||| || | | ||||| ||| | || || | || |||||
Sbjct 5865 GGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCTTTGAACCTACGTGCCTATGAC 5924
Query 171444 TTCGTAAGTCAGGAGGTCAGAGCAGCAGAAGATCCAGAGTTCGAGACGTTCTATACCAAG 171503
||||| ||||| || | ||||| |||||||| || || ||||| |||||||| ||
Sbjct 5925 TTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTTCTATACTAAA 5984
Query 171504 AACATCCTATTGAATGAAGGTCTTCGTGCATGGATGGCACCAGTAGACCAACCACATGAA 171563
|| || || || || |||||| |||| || |||||||| | ||| || || ||||||
Sbjct 5985 AATATTCTTTTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGATCAGCCTCATGAA 6044
Query 171564 AACTTTGTGTTCCCAGAGGAAGTTCTACCTCGTGGCAATGCACTTTGAT 171612
||| || | ||||| ||||| |||||||| ||||| || || |||| ||
Sbjct 6045 AACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAAT 6093
>seq43812
Length=736
Score = 410 bits (454), Expect = 1e-109
Identities = 437/577 (76%), Gaps = 0/577 (0%)
Strand=Plus/Plus
Query 169770 CTGTTTTCCTGGTCTACCCGTTTGGGCAAGGGTCGTTCTCTGACGCTATGCCTCTGGGTA 169829
|||||||| || ||||||| |||| ||||| || ||||| | ||||||||| || |
Sbjct 1 CTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAA 60
Query 169830 TCTCGGGAACCTTTAACTACATGCTGGTCTTCCAAGCTGAGCACAACATCCTCATGCACC 169889
|||| || || || |||| ||| | || ||||| |||||||||||||| || |||||||
Sbjct 61 TCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACC 120
Query 169890 CCTTCCACATGCTTGGTGTTGCGGGAGTGTTTGGTGGGTCTCTGTTTAGCGCGATGCACG 169949
| || |||||| | ||||| || || || || || || || || ||||| || ||||| |
Sbjct 121 CATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATG 180
Query 169950 GTAGCCTCGTCACTTCGAGTCTTGTCCGTGAAACCACCGAGAACGAGTCCCAGAACTATG 170009
|| | || ||||| ||| | || | |||||||| || || || || || | |
Sbjct 181 GTTCTTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 240
Query 170010 GTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCCGCTCACGGTTACTTCG 170069
| |||| ||||||||||||||||| || |||||||| || || ||||||||||| || |
Sbjct 241 GGTACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTG 300
Query 170070 GTCGCCTGATCTTCCAATACGCTTCCTTCAACAACTCCCGTTCACTGCACTTCTTCCTCG 170129
| || ||||||||||||| ||| |||||||| || ||||| | || |||||| | |
Sbjct 301 GCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAG 360
Query 170130 CAGCATGGCCTGTTGTTGGCATCTGGTTCACCGCTCTTGGTGTCTCCACGATGGCGTTCA 170189
| || ||||| || || || || ||||| || ||| | ||| | || ||||| ||||
Sbjct 361 CGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCA 420
Query 170190 ACCTGAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACA 170249
|||| || |||||||| |||||||| || | | ||| |||| || ||||| | || |
Sbjct 421 ACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATA 480
Query 170250 CCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGTAATG 170309
| ||||| || || | ||||||||| ||||| |||||||| ||||| || |||||||
Sbjct 481 CTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 540
Query 170310 CTCACAACTTCCCTCTCGACCTCGCTGCTGCTGAGTC 170346
|||||||||||||||| ||||| ||||||| ||||||
Sbjct 541 CTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAGTC 577
>seq18917
Length=3610
Score = 208 bits (230), Expect = 9e-49
Identities = 294/413 (71%), Gaps = 0/413 (0%)
Strand=Plus/Plus
Query 169352 TTCTGTAACTGGGTAACCTCCACTGACAACCGTCTGTATGTCGGTTGGTTCGGCGTCCTG 169411
|||||||||||| |||| || || |||||||| || | || ||||| || || ||
Sbjct 3193 TTCTGTAACTGGATAACTAGTACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 3252
Query 169412 ATGATCCCCTGCCTGCTGGCAGCAACCACTTGTTTCATCATCGCCTTCATCGGTGCTCCC 169471
||||| || | | || | ||||| | ||| || ||||| ||||| | ||||||
Sbjct 3253 ATGATTCCTACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCCT 3312
Query 169472 CCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGTTCTCTGATGTATGGTAACAAC 169531
|| || || || || || || || ||||| ||| |||| ||||| | || || |||||
Sbjct 3313 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAAT 3372
Query 169532 ATCATCTCTGGTGCTGTTGTGCCCTCTTCCAACGCAATCGGTCTTCACTTCTATCCCATC 169591
|| || || ||||| || | || |||| || || ||| | || || ||||| |||
Sbjct 3373 ATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTATCCGATC 3432
Query 169592 TGGGAAGCAGCAAGTCTCGATGAATGGTTGTACAACGGTGGTCCTTTCCAACTGGTTGTC 169651
|||||||| ||| | ||||||||| | |||||||||||||||| |||| ||||
Sbjct 3433 TGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGTGGTCCTTATGAACTAATTGTT 3492
Query 169652 TTCCACTTCCTCATCGGCATCTATGCTTACATGGGTCGTGAGTGGGAATTGTCCTATCGT 169711
| ||||| | | || | | ||| |||||||||||||||||| | | |||
Sbjct 3493 CTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGT 3552
Query 169712 CTGGGTATGCGCCCTTGGATCTGTGTTGCTTACTCTGCTCCCGTTGCGGCAGC 169764
||||||||||| |||||||| |||||| || || ||||| ||||| || ||
Sbjct 3553 CTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGC 3605
>seq12239
Length=6102
Score = 149 bits (164), Expect = 7e-31
Identities = 366/547 (67%), Gaps = 6/547 (1%)
Strand=Plus/Minus
Query 170607 GATGACTGGCTTAAACGTGATCGGTTTGTATTTGTGGGCTGGTCTGGACTTCTTCTTTTT 170666
||||||||| | | || || || || ||||| || |||||||| || | || |||
Sbjct 611 GATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTT 552
Query 170667 CCCACTGCTTATCTTGCAATTGGCGGCTGGCTTACGGGCACGACATTTGTTACAAGTTGG 170726
|| ||| ||| | || | || || ||| | || || || || ||||| || |||
Sbjct 551 CCTTGTGCCTATTTCGCTTTGGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGG 492
Query 170727 TACACCCACGGACTTGCAAGTTCGTACCTTGAAGGTGCTAATTTCCTTACAGCGGCTGTG 170786
|| | || ||| | || |||| || | |||||| | | | | || | || ||
Sbjct 491 TATATTCATGGATTGGCTAGTTTCTATTTAGAAGGTTGCAGTCTTTTAACCGATGCAGTT 432
Query 170787 TCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAG 170846
|| || |||||| || | | | |||||| | | |||| |||| || ||| | ||
Sbjct 431 TCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTATTACTGTGGG-TCATGAAGCACAA 373
Query 170847 GGGGATTTCCAACGCTGGTTACAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCACGGA 170906
|| ||||| || |||| ||| | || || ||| |||||| | |||||| |
Sbjct 372 GGAGATTTTAGTCGTTGGTGTCAATTAAACGGCCTGTGGGTTTTTGTTTCTCTCCACAGT 313
Query 170907 GCCTTTGCTCTCATAGGTTTCATGCTTCGGCAGTTTGAAATCAGTCG-TCTCGTAGGGAT 170965
|| || || | |||||||| ||| | || || |||||| | ||| ||| || |
Sbjct 312 GCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGATCT-GTTCAATT 254
Query 170966 TAGACCGTACAATGCAATCGCTTTCTCTGGTCCTATCGCTGTGTTTGTCAGCGTGTTCCT 171025
|||| || ||||||||||| ||||||||||| || |||| ||| | | || ||
Sbjct 253 GTGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGGTTTTATTCCTGCCTTTCT 194
Query 171026 CATCTATCCTCTTGGGCAGTCAAGTTGGTTCTTCGCACCTTCCTTTGGAGTTGCAGCAAT 171085
|| ||||||| || || || |||||||||| |||||| ||||| || || | ||
Sbjct 193 AATTTATCCTCA-GGTCAATCTGGTTGGTTCTTTGCACCTAGTTTTGGTGTAGCGGTTAT 135
Query 171086 CTTCCGCTTCCTGCTCTTCCTGCAAGGTTTCCACAACTGGACACTGAATCCATTT-CATA 171144
|| || ||| | ||||| | |||| || | || |||||| |||| |||| | ||||
Sbjct 134 ATTTCGGTTCATCCTCTTTTTCCAAGAGTTTTATAATTGGACATTGAA-CCATCTACATA 76
Query 171145 TGATGGG 171151
|||||||
Sbjct 75 TGATGGG 69
>seq14
Length=72496
Score = 93.3 bits (102), Expect = 5e-14
Identities = 128/179 (72%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 167448 TACATCCTTGACGCGGCTGAGGAAGCGGGTGTGGACATCAACTACTCGTGCCGTGCAGGC 167507
||| |||| ||||| || |||||||| ||| | || | |||||||||||| || ||
Sbjct 64163 TACGTCCTCGACGCAGCGGAGGAAGCTGGTATCGATTTGCCCTACTCGTGCCGCGCGGGA 64104
Query 167508 GCTTGTTCGTCGTGCGCGGGAAAACTCATCTCTGGCACCGTAGATCAAAGCGATCAATCC 167567
|||| ||| ||||| || ||| || |||||||| || | || || | || || |
Sbjct 64103 TCTTGCTCGAGCTGCGCCGGGAAAGTCGTCTCTGGCTCCATTGACCAGACGGACCAGAGC 64044
Query 167568 TTCCTGGACGATGATCAAATTGCCGAAGGTTTCCTTCTCACCTGTGTGTCCTATCCAAC 167626
||| | |||||||| || || |||||| | | |||||||||||| | || || ||
Sbjct 64043 TTCTTAGACGATGAGCAGATGAGCGAAGGGTATGTCCTCACCTGTGTGGCTTACCCGAC 63985
>seq10427
Length=7142
Score = 84.2 bits (92), Expect = 3e-11
Identities = 126/179 (70%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 167448 TACATCCTTGACGCGGCTGAGGAAGCGGGTGTGGACATCAACTACTCGTGCCGTGCAGGC 167507
||| |||| ||||| ||||||||||| || | ||| | ||||| |||||||| ||
Sbjct 1518 TACGTCCTCGACGCTGCTGAGGAAGCAGGAATCGACTTGCCTTACTCTTGCCGTGCTGGT 1459
Query 167508 GCTTGTTCGTCGTGCGCGGGAAAACTCATCTCTGGCACCGTAGATCAAAGCGATCAATCC 167567
|||| ||| || || || ||| | | ||||| | || || || || ||
Sbjct 1458 TCTTGCTCGAGCTGTGCCGGTAAAGTTGTGTCTGGATCAGTTGACCAGTCTGACCAGAGT 1399
Query 167568 TTCCTGGACGATGATCAAATTGCCGAAGGTTTCCTTCTCACCTGTGTGTCCTATCCAAC 167626
||||| || ||||| || ||||| ||||| ||| ||||||| |||| | | ||||| ||
Sbjct 1398 TTCCTCGATGATGACCAGATTGCTGAAGGATTCGTTCTCACTTGTGCGGCTTATCCTAC 1340
>seq4821
Length=12785
Score = 84.2 bits (92), Expect = 3e-11
Identities = 126/179 (70%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 167448 TACATCCTTGACGCGGCTGAGGAAGCGGGTGTGGACATCAACTACTCGTGCCGTGCAGGC 167507
||| |||| ||||| ||||||||||| || | ||| | ||||| |||||||| ||
Sbjct 11182 TACGTCCTCGACGCTGCTGAGGAAGCAGGAATTGACTTGCCTTACTCTTGCCGTGCTGGT 11123
Query 167508 GCTTGTTCGTCGTGCGCGGGAAAACTCATCTCTGGCACCGTAGATCAAAGCGATCAATCC 167567
|||| ||| || || || ||| | | ||||| | || || || || ||
Sbjct 11122 TCTTGCTCGAGCTGTGCCGGTAAAGTTGTGTCTGGATCTGTTGACCAGTCTGACCAGAGT 11063
Query 167568 TTCCTGGACGATGATCAAATTGCCGAAGGTTTCCTTCTCACCTGTGTGTCCTATCCAAC 167626
||||| || ||||| || ||||| ||||| ||| ||||||| |||| | | ||||| ||
Sbjct 11062 TTCCTCGATGATGACCAGATTGCTGAAGGATTCGTTCTCACTTGTGCGGCTTATCCTAC 11004
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 591719222664640
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