Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0
00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq806 159 3e-34
seq1703 132 4e-26
seq4396 129 5e-25
seq24793 122 8e-23
seq12662 122 8e-23
seq23940 118 1e-21
seq6096 118 1e-21
seq11485 107 2e-18
seq37186 105 6e-18
seq7912 105 6e-18
seq7348 96.9 3e-15
seq964 96.9 3e-15
seq20570 93.3 4e-14
>seq806
Length=29032
Score = 159 bits (176), Expect = 3e-34
Identities = 179/234 (76%), Gaps = 4/234 (2%)
Strand=Plus/Plus
Query 41634 CGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGG 41693
|||| || || ||||| | || ||||| ||||| ||||||||| ||||| |||||||
Sbjct 17948 CGCCACCACGGAGACGGAGGACGAGATGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGG 18007
Query 41694 AGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCC-GCG 41752
||| ||||| |||| ||||||||||| |||||||| ||||| ||||| |||||| |||
Sbjct 18008 CGAGTGTGCGGCCGTCTTCGAGCTGCTTCCCGGCGAAGATCAGTCGCTGCTGGTCCGGCG 18067
Query 41753 GGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTC 41811
||| | || ||||||||| || | || || | ||| | | | |||||| |||||
Sbjct 18068 GGATCCCT-TCCTTGTCC-TGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGGACTC 18125
Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865
||||| | |||||||| || ||||| || || || ||||| |||||||| ||
Sbjct 18126 GACCTCGAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTT 18179
>seq1703
Length=21771
Score = 132 bits (146), Expect = 4e-26
Identities = 169/230 (73%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
||| || || ||||||||||||| || || || ||| ||||||||||| || || |
Sbjct 18139 GCCACCACGGAGACGTAACACCAAGTGAAGGGTCGACTCTTTCTGAATGTTGTAATCAGC 18198
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
| |||||| | || ||||||||||| || ||||||||||| | ||| ||||||| ||
Sbjct 18199 CAAGGTGCGACCATCCTCGAGCTGCTTCCCAGCGAATATCAGCCTCTGCTGGTCCGGAGG 18258
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813
| | ||| |||| | || |||| |||| ||| | | | |||||| |||||
Sbjct 18259 GATACCCTCTTTGT-CTTGGATTTTCGCTTTCACGTTGTCAATGGTGTCGGAACTCTCCA 18317
Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
|||| | || ||||| || || |||| |||||| ||||| |||||||||
Sbjct 18318 CCTCTAAAGTGATCGTCTTTCCTGTCAACGTCTTAACGAAGATCTGCATG 18367
Score = 109 bits (120), Expect = 5e-19
Identities = 167/233 (72%), Gaps = 4/233 (2%)
Strand=Plus/Plus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
||| || |||||||| || |||| || ||||| ||||||||| || || || ||||
Sbjct 18823 GCCTCCACGTAGACGCAAGACCAAGTGAAGCGTAGACTCCTTCTGGATATTGTAATCGGC 18882
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCC-GCGG 41753
| |||||| | || ||||||||||| |||||||| || || ||||| || ||| | ||
Sbjct 18883 CAAGGTGCGACCATCCTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCCGGAGG 18942
Query 41754 GAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCC 41812
|| | || ||||||||| || | || |||| ||| | | | |||||| |||
Sbjct 18943 GATCCCT-TCCTTGTCC-TGGATCTTGGCTTTCACGTTGTCGATGGTGTCGGAGCTTTCC 19000
Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865
||||| | || || || || || || || || || ||||| || ||||| ||
Sbjct 19001 ACCTCGAGGGTGATTGTCTTCCCGGTGAGAGTTTTCACGAAGATTTGCATCTT 19053
Score = 96.9 bits (106), Expect = 3e-15
Identities = 163/232 (70%), Gaps = 8/232 (3%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | |||| || || || ||||||||| || || ||||| |
Sbjct 17912 CCACCACGGAGACGGAGGACCAAGTGAAGAGTCGACTCCTTCTGGATATTGTAGTCTGCC 17971
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
| |||||| | || ||||||||||| || ||||| || || ||||| || |||| ||
Sbjct 17972 AAGGTGCGACCATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCCGGAGGG 18031
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTC 41811
| | ||||||||| ||| || |||| ||| | | | |||||| ||| |||
Sbjct 18032 ATACCTTCCTTGTCCTGGATCTTAGCCTTC-ACGTTGTCAATAGTGTCAGAGCT---CTC 18087
Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
||||||| || || || || || || || ||||| || || |||||||||
Sbjct 18088 AACCTCCAATGTGATAGTCTTCCCGGTAAGAGTCTTGACAAAGATCTGCATG 18139
Score = 86.0 bits (94), Expect = 6e-12
Identities = 160/230 (70%), Gaps = 4/230 (2%)
Strand=Plus/Plus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
||| || |||||||| || |||| || ||||| || ||||| ||||| ||||| |
Sbjct 18367 GCCTCCACGTAGACGCAAGACCAAGTGAAGCGTAGATTCTTTCTGGATGTTGTAGTCAGC 18426
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC-GG 41753
|| || | | | || || | |||||| ||||| || |||| | ||| ||||| | ||
Sbjct 18427 AAGAGTCCTCCCATCCTCCAACTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGTGG 18486
Query 41754 GAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACAC-AGTGTCGCTCGACTCC 41812
|| | || ||||| ||| ||| | || || | || | || ||| ||| ||||
Sbjct 18487 GATCCCT-TCCTTATCC-TGAATCTTAGCCTTGACATTGTCAATAGTATCGGAGCTCTCC 18544
Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
||||||| || || || || || |||| ||||| || || ||||||||
Sbjct 18545 ACCTCCAAAGTAATAGTCTTTCCAGTCAAAGTCTTGACAAAGATCTGCAT 18594
>seq4396
Length=13502
Score = 129 bits (142), Expect = 5e-25
Identities = 167/228 (73%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||||||||||| || || || ||| ||||||||||| || || |
Sbjct 12717 CCACCACGCAGACGTAACACCAAGTGAAGGGTTGACTCTTTCTGAATGTTGTAATCAGCC 12658
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
| |||||| | || || ||||||||||| ||||| || || ||||| ||||||| ||
Sbjct 12657 AAGGTGCGACCATCCTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGG 12598
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| | |||||||||| ||| | || || | ||| | | | |||||| ||||||
Sbjct 12597 ATCCCCTCCTTGTCC-TGAATCTTGGCCTTGACGTTGTCAATGGTGTCGGAGCTCTCCAC 12539
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
||||| || || || || || ||||| ||||| || |||||||||||
Sbjct 12538 CTCCAAAGTGATAGTCTTCCCGGTCAGTGTCTTAACAAAAATCTGCAT 12491
Score = 116 bits (128), Expect = 3e-21
Identities = 164/228 (72%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| ||||||| || || || ||||||||| ||||||||||| |
Sbjct 328 CCTCCACGCAGACGCAACACCAAGTGAAGTGTAGACTCCTTCTGGATGTTATAGTCAGCC 269
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
| |||||| | || |||||||||||||| ||||| || || ||||| ||||||| ||
Sbjct 268 AAGGTGCGACCATCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGG 209
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| | |||||||||| ||| | || || | ||| | | | |||||| ||| ||
Sbjct 208 ATTCCCTCCTTGTCC-TGAATCTTAGCCTTGACGTTGTCAATGGTGTCGGAGCTCTCAAC 150
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|| | || || || || || || || ||||| || || ||||||||
Sbjct 149 TTCGAGGGTGATTGTCTTTCCGGTTAGTGTCTTGACAAAGATCTGCAT 102
Score = 95.1 bits (104), Expect = 1e-14
Identities = 164/232 (71%), Gaps = 10/232 (4%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| || |||| || || || ||||||||| || || ||||| | |
Sbjct 556 CCACCACGCAGACGCAAGACCAAGTGAAGTGTAGACTCCTTCTGGATATTGTAGTCAGCG 497
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC-CGCGGG 41754
|| || | |||| ||||||||||| || ||||| || || ||||| ||||| | |||
Sbjct 496 AGAGTCCTGCCGTCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGAGGG 437
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACT 41810
| | || ||||| | | || | || |||| ||| | | ||||| ||| ||
Sbjct 436 ATCCCT-TCCTTAT-CTTGGATCTTGGCTTTCACGTTATCAATCGTGTCCGAGCT---CT 382
Query 41811 CCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
||||||||| || || || ||||| |||| ||||| ||||| || |||||
Sbjct 381 CCACCTCCAGTGTGATGGTCTTACCAGTCAAGGTCTTGACGAAGATTTGCAT 330
>seq24793
Length=2311
Score = 122 bits (134), Expect = 8e-23
Identities = 157/213 (74%), Gaps = 8/213 (4%)
Strand=Plus/Plus
Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713
|| ||||| || || ||||||||| ||||| || || | ||| || | |||| |||
Sbjct 1633 ACAAGATGAAGGGTCGACTCCTTCTGGATGTTGTAATCAGCGAGAGTCCTGCCGTCCTCG 1692
Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773
|||||||| |||||||| || || | ||| || |||| ||||| || |||||||||| ||
Sbjct 1693 AGCTGCTTTCCGGCGAAGATAAGCCTCTGCTGATCCGGGGGAATGCCCTCCTTGTCC-TG 1751
Query 41774 ATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTCCACCTCCACCGTTATCGT 41829
| | || |||| |||| | | | ||||| ||| |||||||| | || || ||
Sbjct 1752 AATCTTGGCTTTAACGTTGTCGATGGTGTCTGAGCT---TTCCACCTCGAGGGTGATTGT 1808
Query 41830 TTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|| ||||| || ||||| || |||||||||||
Sbjct 1809 CTTTCCCGTGAGAGTCTTAACAAAAATCTGCAT 1841
Score = 114 bits (126), Expect = 1e-20
Identities = 153/210 (73%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713
|| |||||||| || ||||||||| ||||| ||||| | | || | |||| ||
Sbjct 1405 ACGAGATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCCGCCAATGTTCTGCCGTCTTCA 1464
Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773
||||||||||||||||| |||| | ||| ||||||| || | | |||||||| | ||
Sbjct 1465 AGCTGCTTGCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGGATACCCTCCTTGT-CTTG 1523
Query 41774 ATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTT 41832
| ||||||| ||| | | | |||||| ||||||||| | || ||||| ||
Sbjct 1524 GATCTTTGCTTTGACGTTGTCGATGGTGTCGGAGCTCTCCACCTCTAGGGTAATCGTCTT 1583
Query 41833 ACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
||||||| ||||| ||||| ||||||||
Sbjct 1584 TCCCGTCAAGGTCTTAACGAAGATCTGCAT 1613
>seq12662
Length=5898
Score = 122 bits (134), Expect = 8e-23
Identities = 157/213 (74%), Gaps = 8/213 (4%)
Strand=Plus/Minus
Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713
|| ||||| || || ||||||||| ||||| || || | ||| || | |||| |||
Sbjct 3469 ACAAGATGAAGGGTCGACTCCTTCTGGATGTTGTAATCAGCGAGAGTCCTGCCGTCCTCG 3410
Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773
|||||||| |||||||| || || | ||| || |||| ||||| || |||||||||| ||
Sbjct 3409 AGCTGCTTTCCGGCGAAGATAAGCCTCTGCTGATCCGGGGGAATGCCCTCCTTGTCC-TG 3351
Query 41774 ATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTCCACCTCCACCGTTATCGT 41829
| | || |||| |||| | | | ||||| ||| |||||||| | || || ||
Sbjct 3350 AATCTTGGCTTTAACGTTGTCGATGGTGTCTGAGCT---TTCCACCTCGAGGGTGATTGT 3294
Query 41830 TTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|| ||||| || ||||| || |||||||||||
Sbjct 3293 CTTTCCCGTGAGAGTCTTAACAAAAATCTGCAT 3261
Score = 120 bits (132), Expect = 3e-22
Identities = 154/210 (73%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713
|| |||||||| || ||||||||| ||||| ||||| | ||| || | |||| ||
Sbjct 3697 ACGAGATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCAGCGAGAGTTCTGCCGTCTTCA 3638
Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773
||||||||||| ||||| |||| | ||| ||||||| || | | |||||||| | ||
Sbjct 3637 AGCTGCTTGCCTGCGAAGATCAACCTCTGCTGGTCCGGTGGGATCCCCTCCTTGT-CTTG 3579
Query 41774 ATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTT 41832
| ||||||| ||| | | | |||||| ||||||||| | || ||||| ||
Sbjct 3578 GATCTTTGCTTTGACGTTGTCGATGGTGTCGGAGCTCTCCACCTCTAGGGTAATCGTCTT 3519
Query 41833 ACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
||||||| ||||| ||||| ||||||||
Sbjct 3518 TCCCGTCAAGGTCTTAACGAAGATCTGCAT 3489
>seq23940
Length=2465
Score = 118 bits (130), Expect = 1e-21
Identities = 101/125 (81%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704
||||| | ||||| || ||||| ||||||||| ||||| ||||||| |||||||||
Sbjct 2310 AGACGGAGAACCAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGT 2369
Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764
|||| ||||||||||| |||||||| || |||||||| ||||||| || | || |||
Sbjct 2370 CCGTCCTCGAGCTGCTTTCCGGCGAAAATGAGGCGCTGCTGGTCCGGAGGGATGCCTTCC 2429
Query 41765 TTGTC 41769
|||||
Sbjct 2430 TTGTC 2434
>seq6096
Length=10951
Score = 118 bits (130), Expect = 1e-21
Identities = 101/125 (81%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704
||||| | ||||| || ||||| ||||||||| ||||| ||||||| |||||||||
Sbjct 10784 AGACGGAGAACCAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGT 10843
Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764
|||| ||||||||||| |||||||| || |||||||| ||||||| || | || |||
Sbjct 10844 CCGTCCTCGAGCTGCTTTCCGGCGAAAATGAGGCGCTGCTGGTCCGGAGGGATGCCTTCC 10903
Query 41765 TTGTC 41769
|||||
Sbjct 10904 TTGTC 10908
>seq11485
Length=6519
Score = 107 bits (118), Expect = 2e-18
Identities = 162/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | || ||||| ||||| |||||||||||| || || || |
Sbjct 4932 CCACCACGGAGACGGAGGACGAGATGAAGCGTAGACTCCTTCTGAATATTGTAATCCGCA 4873
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| ||||| | || || ||||| || || ||||| || || | ||| ||||||| |||
Sbjct 4872 AGCGTGCGTCCATCCTCAAGCTGTTTACCAGCGAAGATGAGTCTCTGCTGGTCCGGAGGA 4813
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| | ||||||||| || | ||||||| || | | | ||||||| ||| ||
Sbjct 4812 ATTCCTTCCTTGTCC-TGGATCTTTGCTTTCACATTGTCAATAGTGTCGGAGCTCTCAAC 4754
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
||||| || || || || || |||| ||||| || |||||||||||
Sbjct 4753 CTCCAAAGTGATGGTCTTGCCTGTCAAAGTCTTGACAAAAATCTGCAT 4706
Score = 95.1 bits (104), Expect = 1e-14
Identities = 162/231 (70%), Gaps = 8/231 (3%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | |||| || || || ||||||||| ||||| || || |
Sbjct 5160 CCACCACGAAGACGAAGAACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCAGCC 5101
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
| || || | || |||||||| || || ||||| || || | ||| ||||||| ||
Sbjct 5100 AAAGTCCGACCATCCTCGAGCTGTTTCCCAGCGAAGATGAGTCTCTGCTGGTCCGGAGGG 5041
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTC 41811
| || ||||||||| ||| | || |||| || | | | ||||| |||| ||
Sbjct 5040 ATGCCTTCCTTGTCC-TGAATCTTCGCTTTCACATTGTCGATCGTGTCAGAGCTC---TC 4985
Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
||| || | || || |||||||| || || ||||| ||||||||||||||
Sbjct 4984 CACTTCAAGGGTAATGGTTTTACCGGTGAGTGTCTTGACGAAAATCTGCAT 4934
>seq37186
Length=985
Score = 105 bits (116), Expect = 6e-18
Identities = 151/210 (72%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713
|| |||||||| || ||||||||| ||||| ||||| | | || | |||| ||
Sbjct 1 ACGAGATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCCGCCAATGTTCTGCCGTCTTCA 60
Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773
||||||||||||||||| |||| | ||| ||||||| || | | |||||||| | ||
Sbjct 61 AGCTGCTTGCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGGATACCCTCCTTGT-CTTG 119
Query 41774 ATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTT 41832
| || |||| || | | | |||||| ||||||||||| || || || ||
Sbjct 120 GATCTTAGCTTTGACATTGTCAATGGTGTCGGAGCTCTCCACCTCCAAAGTAATGGTCTT 179
Query 41833 ACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|| |||| ||||| ||||||||||||||
Sbjct 180 GCCGGTCAATGTCTTAACGAAAATCTGCAT 209
Score = 89.7 bits (98), Expect = 5e-13
Identities = 150/213 (70%), Gaps = 8/213 (4%)
Strand=Plus/Plus
Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713
|| ||||||| || |||||| || ||||| ||||| | ||| || | || | |||
Sbjct 229 ACGAGATGCAAAGTTGACTCCTTTTGGATGTTGTAGTCAGCGAGAGTCCTGCCGACCTCG 288
Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773
|||||||||||||| || |||| | ||| ||||||| || | | |||||||||| ||
Sbjct 289 AGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCCGGTGGGATTCCCTCCTTGTCC-TG 347
Query 41774 ATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTCCACCTCCACCGTTATCGT 41829
| | || || | || | | ||||| ||| ||||||||| | || || ||
Sbjct 348 AATCTTAGCCTTGACATTATCGATGGTGTCCGAGCT---CTCCACCTCGAGAGTGATGGT 404
Query 41830 TTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|| || || || ||||| ||||| ||||||||
Sbjct 405 CTTTCCGGTAAGGGTCTTGACGAAGATCTGCAT 437
>seq7912
Length=9007
Score = 105 bits (116), Expect = 6e-18
Identities = 165/232 (71%), Gaps = 8/232 (3%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| ||||||| || || ||| |||||| || || || |||||||
Sbjct 6108 CCACCACGAAGACGCAACACCAAGTGAAGTGTGGACTCCTTTTGGATATTGTAGTCGGCT 6167
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
| |||||| | || || ||||||||||| ||||| || || ||||| ||||||| ||
Sbjct 6168 AAGGTGCGACCATCCTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGG 6227
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTC 41811
| | ||||| ||| || | || || | || | | | ||||| ||| |||
Sbjct 6228 ATACCTTCCTTATCC-TGGATCTTGGCCTTGACATTGTCAATGGTGTCAGAGCT---CTC 6283
Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
|||||||| ||| || || || || || || ||||| || || |||||||||
Sbjct 6284 CACCTCCAACGTGATGGTCTTGCCGGTAAGTGTCTTGACAAAGATCTGCATG 6335
Score = 96.9 bits (106), Expect = 3e-15
Identities = 149/210 (71%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713
|| ||||| ||||| |||||| || ||||| ||||| | | || | |||| |||
Sbjct 6582 ACGAGATGAAGCGTAGACTCCTTTTGGATGTTGTAGTCTGCCAATGTTCTGCCGTCTTCG 6641
Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773
||||||||||||||||| || || | ||| || || | || | | ||||||||| ||
Sbjct 6642 AGCTGCTTGCCGGCGAAGATGAGCCTCTGCTGATCGGGAGGGATACCTTCCTTGTCC-TG 6700
Query 41774 ATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTT 41832
| | || |||| ||| | | | |||||| |||||||| | || || || ||
Sbjct 6701 AATCTTGGCTTTGACGTTGTCGATTGTGTCGGAGCTTTCCACCTCGAGGGTGATGGTCTT 6760
Query 41833 ACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
||||| || ||||| ||||| ||||||||
Sbjct 6761 TCCCGTGAGAGTCTTAACGAAGATCTGCAT 6790
>seq7348
Length=9517
Score = 96.9 bits (106), Expect = 3e-15
Identities = 147/207 (71%), Gaps = 2/207 (1%)
Strand=Plus/Minus
Query 41653 CACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTC 41712
||||| || || || ||||||||| ||||| ||||||| || ||||| | || ||
Sbjct 206 CACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCAAGAGTGCGACCATCCTC 147
Query 41713 GAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCAT 41772
||||||||| || ||||| || || ||||| ||||||| || | | |||||||||
Sbjct 146 GAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATACCTTCCTTGTCCTG 87
Query 41773 GATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTT 41831
||| || |||| ||| | | | |||||| ||| || |||| || || || |
Sbjct 86 GATCTTAGCCTTC-ACGTTGTCAATGGTGTCGGAGCTCTCAACTTCCAATGTGATGGTCT 28
Query 41832 TACCCGTCAGCGTCTTTACGAAAATCT 41858
| || || || ||||| ||||| ||||
Sbjct 27 TGCCGGTAAGAGTCTTCACGAAGATCT 1
>seq964
Length=27231
Score = 96.9 bits (106), Expect = 3e-15
Identities = 157/222 (71%), Gaps = 8/222 (4%)
Strand=Plus/Minus
Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704
|| || | ||| ||||||||||| ||| ||||||||||| ||||| | || |||||
Sbjct 10166 AGTCGAAGCACAAGATGCAGCGTAGACTCTTTCTGAATGTTGTAGTCAGCTAGCGTGCGT 10107
Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764
| || || |||||||| ||||| || || || | ||| ||||||| || | | |||
Sbjct 10106 CCATCCTCCAGCTGCTTACCGGCAAAGATGAGCCTCTGCTGGTCCGGTGGGATACCCTCT 10047
Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTCCACCTCCAC 41820
|| ||| || | || || | ||| | | | ||||| ||| ||| |||||||
Sbjct 10046 TTATCC-TGGATCTTAGCCTTGACGTTGTCAATGGTGTCTGAGCT---CTCAACCTCCAA 9991
Query 41821 CGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|| || |||||||| || || ||||| || || || |||||
Sbjct 9990 AGTGATGGTTTTACCGGTGAGGGTCTTGACAAAGATTTGCAT 9949
Score = 96.9 bits (106), Expect = 3e-15
Identities = 165/233 (71%), Gaps = 10/233 (4%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| ||||| || || || || ||||||||| || || || || |
Sbjct 10403 CCACCACGGAGACGCAACACAAGGTGAAGGGTCGACTCCTTCTGGATATTGTAATCTGCA 10344
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC-GGG 41754
|| || || | || || ||||| || || ||||| || || | ||| ||||||| |||
Sbjct 10343 AGCGTACGACCATCCTCAAGCTGTTTCCCAGCGAAGATGAGTCTCTGCTGGTCCGGTGGG 10284
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACT 41810
| | || ||||||||| ||| | || || | ||| | | ||||| |||| |
Sbjct 10283 ATCCCT-TCCTTGTCC-TGAATCTTAGCCTTGACGTTATCGATCGTGTCAGAGCTC---T 10229
Query 41811 CCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
||||||||| || || ||||| || || || ||||| || ||||||||||||
Sbjct 10228 CCACCTCCAAAGTGATGGTTTTGCCAGTGAGGGTCTTCACAAAAATCTGCATG 10176
Score = 95.1 bits (104), Expect = 1e-14
Identities = 164/232 (71%), Gaps = 10/232 (4%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | |||| || ||||| ||||||||| || || ||||| |
Sbjct 10631 CCACCACGAAGACGAAGAACCAAGTGAAGCGTCGACTCCTTCTGGATATTGTAGTCAGCA 10572
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCC-GCGGG 41754
|| ||||| | || || |||||||| || ||||| || || | |||||||||| | |||
Sbjct 10571 AGCGTGCGACCATCCTCAAGCTGCTTACCAGCGAAGATGAGTCTCTGTTGGTCCGGAGGG 10512
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACT 41810
| | || ||||||||| ||| |||| || | || | | | ||||| ||| ||
Sbjct 10511 ATCCCT-TCCTTGTCC-TGAATTTTAGCCTTCACATTGTCGATTGTGTCTGAGCT---CT 10457
Query 41811 CCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
| || |||| || || || || || ||||| ||||| || || || |||||
Sbjct 10456 CAACTTCCAAGGTAATAGTCTTGCCTGTCAGAGTCTTCACAAAGATTTGCAT 10405
>seq20570
Length=3172
Score = 93.3 bits (102), Expect = 4e-14
Identities = 148/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713
|| ||||||| || ||||||||| ||||| ||||| | || || | | || |||
Sbjct 82 ACGAGATGCAAAGTTGACTCCTTCTGGATGTTGTAGTCAGCAAGAGTCCTTCCATCCTCG 141
Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773
|| ||||||||||| || |||| | ||| ||||| | || | | |||||| ||| ||
Sbjct 142 AGTTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGTGGGATCCCCTCCTTATCC-TG 200
Query 41774 ATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTT 41832
| || || | |||| | | | ||||||| ||||||||||| || || || ||
Sbjct 201 GATCTTAGCCTTAACGTTGTCAATAGTGTCGGAGCTCTCCACCTCCAAAGTGATTGTCTT 260
Query 41833 ACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|| |||| ||||| || || ||||||||
Sbjct 261 TCCGGTCAATGTCTTGACAAAGATCTGCAT 290
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 461929926718400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |