Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq2 95.1 1e-14 seq5 91.5 1e-13 >seq2 Length=43799612 Score = 95.1 bits (104), Expect = 1e-14 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 18972 ATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATTATCC 19031 |||| || |||||||| |||| ||| |||||||||||||||||| || || | || Sbjct 41543539 ATGGCGCTTCCTCCATGCCACATGTTTGCTCAGTTTTACGTTGCAAATGGAGAGCTCTCG 41543480 Query 19032 TGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCTGGA 19091 || ||| | || ||| | || | |||||||| ||||| ||||| || |||||||| Sbjct 41543479 TGTCAAATGTATCAGCGCTCAGCTGATATGGGTCTTGGTGTACCTTTTAACATTGCCTCT 41543420 Query 19092 TATGCACTTCTTACCTACATAGTAGCGCATGT 19123 || | |||||||| | ||| |||| || || Sbjct 41543419 TACTCCCTTCTTACATGCATTCTAGCTCACGT 41543388 >seq5 Length=45943323 Score = 91.5 bits (100), Expect = 1e-13 Identities = 202/303 (67%), Gaps = 0/303 (0%) Strand=Plus/Minus Query 18870 CAAGGAATCGATCAGCTGCAAACTGTTATAGATACAATTAAAACAAACCCAGAAAGCCGA 18929 |||||| | ||||||||| | ||| || || | || || | || || || || Sbjct 37434709 CAAGGATTTGATCAGCTGGCAGATGTAATCGACAAGATCAAGAACAATCCTGATGATCGG 37434650 Query 18930 CGAATGATTATATCGTCTTGGAATCCAAAGGATATCCCCTTAATGGTACTACCTCCATGT 18989 || || || ||||| ||||||| || || || | |||| || ||||| || Sbjct 37434649 CGTATCATATTATCGGCTTGGAACCCTTCTGACCTCAAGCTGATGGCGCTTCCTCCGTGC 37434590 Query 18990 CACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATTATCCTGCCAAGTATACCAGAGA 19049 |||| ||| ||||| ||||| || | || || | || || || | || ||| | Sbjct 37434589 CACATGTTCGCACAGTTCTACGTGGCGGAAGGGGAGCTCTCGTGTCAGATGTATCAGCGT 37434530 Query 19050 TCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCTGGATATGCACTTCTTACCTAC 19109 || | ||||||||||||||| || ||||| ||||||||| || | ||||| || | | Sbjct 37434529 TCAGCGGATATGGGCCTTGGTGTGCCGTTTAACATTGCTTCCTACTCTCTTCTGACTTGC 37434470 Query 19110 ATAGTAGCGCATGTTACAGGACTTAAAACCGGAGATTTAATTCATACAATGGGGGATGCA 19169 || |||| ||||| | ||| |||| ||||| || ||| || |||||||| Sbjct 37434469 ATGCTAGCTCATGTGTGTGATCTTGTTCCCGGTGATTTTATCCATGTCATTGGGGATGCT 37434410 Query 19170 CAT 19172 ||| Sbjct 37434409 CAT 37434407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399452019036420