Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq5 114 9e-21 seq2 86.0 5e-12 >seq5 Length=45943323 Score = 114 bits (126), Expect = 9e-21 Identities = 114/148 (77%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 101708 TGAGCATCTCCTATAGTATGGATAAACTCTCCAGGCACTAGATTAGTGACATGAGCAATC 101767 |||||||| || || ||||||||| || || || || |||| | |||||||| | | Sbjct 37434408 TGAGCATCCCCAATGACATGGATAAAATCACCGGGAACAAGATCACACACATGAGCTAGC 37434467 Query 101768 ATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCCATATCAGCT 101827 |||||||| | |||||| ||| |||||||||||| ||||| || | |||||||| ||| Sbjct 37434468 ATGCAAGTCAGAAGAGAGTAGGAAGCAATGTTAAACGGCACACCAAGGCCCATATCCGCT 37434527 Query 101828 GATCTTTGATACAGTTGACAGGAAAGCT 101855 || | ||||||| ||||| || |||| Sbjct 37434528 GAACGCTGATACATCTGACACGAGAGCT 37434555 >seq2 Length=43799612 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 101755 GACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAA 101814 ||| ||||| | ||||| || | ||| || || ||||||||||| || || || | Sbjct 41543387 GACGTGAGCTAGAATGCATGTAAGAAGGGAGTAAGAGGCAATGTTAAAAGGTACACCAAG 41543446 Query 101815 CCCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATAAAA 101874 |||||||||||||| | ||||||| |||||| || |||| ||||| || ||||| Sbjct 41543447 ACCCATATCAGCTGAGCGCTGATACATTTGACACGAGAGCTCTCCATTTGCAACGTAAAA 41543506 Query 101875 TTGACTTAATACATGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAACATTCCAAGC 101934 ||| || | || || || || | | |||| || ||| ||| ||||||||| Sbjct 41543507 CTGAGCAAACATGTGGCATGGAGGAAGCGCCATCAGCTTAAGGTCAGAAGGATTCCAAGC 41543566 Query 101935 ACACATTAACATCCTTCTATCTGTAGGGTT 101964 |||||| |||| | ||| |||||| Sbjct 41543567 CGACATTATAATCCGCCGATCGTCAGGGTT 41543596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361204196251676