Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq4 129 7e-25 >seq4 Length=50002108 Score = 129 bits (142), Expect = 7e-25 Identities = 386/585 (66%), Gaps = 8/585 (1%) Strand=Plus/Minus Query 24129 ATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAAC 24188 |||| || |||||||||||||| || ||||||||||| || | |||||||| || Sbjct 15359141 ATCAGGCAGGCGAAATCGCAGTGAAGCCCCTCGTCTCTCGAGATCAGCTCGTTGGAGAAG 15359082 Query 24189 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGA 24247 || || || ||||| || |||||||| || ||||| || || || ||| || ||| || Sbjct 15359081 GTCAGACCAGGCATGAGCCCACGCTTCTTGAGCCAGAAGATCGA-GCAGAAGCTTCCGGA 15359023 Query 24248 AAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCT-TTCTCCATAACCGGCGCTGT 24306 ||||| || ||||| || || ||||| | | || | | | | | | | | | Sbjct 15359022 GAAGAAGATCCCTTCCACGCAGGCGAAGGCGACGATCCTCTCCGCGAAAGTCTGAGAT-C 15358964 Query 24307 CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAG 24366 | | |||||||| ||||| | ||||||||| || || || || ||||| || | Sbjct 15358963 CGTCGATCCACTTCATGGCCCATTGGGCCTTCTTCGCGACGCAGGGGATGGTCTCGATGG 15358904 Query 24367 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTAT 24426 | ||||||| || | || || |||| || | || || || | || || |||| Sbjct 15358903 CCCGGAAGAGATGGTCCCTCTCCTTGTTATCCTTGATGTAGGTGTCGAGCAGGAGGCTAT 15358844 Query 24427 ACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGG 24486 |||| || || || ||||| ||||| || || || || |||||||| | ||||||| Sbjct 15358843 ACATCTCTGAGTGGATGTTCTCAATCGCGATCTGGAAGCCGTAGAAGGCACGCGCCTCGG 15358784 Query 24487 TAATCTGTACTTCTATACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTG 24545 | ||| || || ||| || || || | || || || |||||||| | Sbjct 15358783 AGACCTGGACGTC-GGACATGAACCGGGAGGCGAGGTTCTCCAGGACGATTCCGTCGGAG 15358725 Query 24546 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTATT 24604 || || || || || | || ||||| || || | || || | ||| || || | Sbjct 15358724 GCGGCGAAGAAGGCTAGGACGTGTTTGATGAAGTGGCGCTC-TCCGTCGTTGAGATTCTC 15358666 Query 24605 CCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGC 24664 ||| || | ||| || | ||| ||||| || | ||||| || || || || || Sbjct 15358665 CCAGTCGCGTGTGTCTCCGGAGAGATCGACTTCCTCGGCGGTCCAGAAGGAGGCTTCGGC 15358606 Query 24665 CTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAAT 24709 ||| || ||||| | |||||| | | ||||| ||||| || || Sbjct 15358605 CTTCTTGTACATCTCCCAGATCTGTGGGTATTGGATTGGGAACAT 15358561 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593642367852480