Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq3 89.7 4e-13 >seq3 Length=29132933 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| |||||| | ||||| | || || || ||||| ||| ||| |||| | | Sbjct 2317004 ATGCAGATATTCGTGAAAACTCTCACAGGAAAGACCATCACCCTCGAGGTGGAAAGCTCC 2316945 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | | ||||| || || ||||| ||||| | || ||||| Sbjct 2316944 GACACCATCGACAACGTTAAGGCCAAGATCCAGGATAAGGAAGGCATCCCTCCGGATCAG 2316885 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || || ||||||||||| || || || || || ||| | ||| | || || ||||| Sbjct 2316884 CAGAGGCTTATCTTTGCCGGGAAGCAGCTTGAGGATGGAAGGACTCTAGCAGACTACAAC 2316825 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || |||||||| ||||| |||||| ||||||| || |||| || || Sbjct 2316824 ATCCAGAAGGAGTCTACCCTTCACTTGGTGTTGCGTCTACGTGGTGG 2316778 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| |||||| | ||||| | || || || ||||| ||| ||| |||| | | Sbjct 2324799 ATGCAGATATTCGTGAAAACTCTCACAGGAAAGACCATCACCCTCGAGGTGGAAAGCTCC 2324740 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | | ||||| || || ||||| ||||| | || ||||| Sbjct 2324739 GACACCATCGACAACGTTAAGGCCAAGATCCAGGATAAGGAAGGCATCCCTCCGGATCAG 2324680 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || || ||||||||||| || || || || || ||| | ||| | || || ||||| Sbjct 2324679 CAGAGGCTTATCTTTGCCGGGAAGCAGCTTGAGGATGGAAGGACTCTAGCAGACTACAAC 2324620 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || |||||||| ||||| |||||| ||||||| || |||| || || Sbjct 2324619 ATCCAGAAGGAGTCTACCCTTCACTTGGTGTTGCGTCTACGTGGTGG 2324573 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428280267596780