Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq5 114 2e-20 >seq5 Length=45943323 Score = 114 bits (126), Expect = 2e-20 Identities = 180/255 (71%), Gaps = 2/255 (1%) Strand=Plus/Plus Query 145684 AGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTGGATGAAGTCCCCG 145743 || ||| |||||| | | || || || || ||||| | ||| ||||| || || ||| Sbjct 37434381 AGAGGCCTCACGTGAGTTCGATACACATGAGCATCCCCAATGACATGGATAAAATCACCG 37434440 Query 145744 GGCTCGAGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTG 145803 || | || | | || || | |||| | ||||| || |||||| || ||||| Sbjct 37434441 GGAACAAGATCACACACATGAGCTAGCATGCAAGTCAGAAGAGAGTAGGAAGCAATGTTA 37434500 Query 145804 AAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCG 145863 || ||||| || || ||||| ||| | || ||||| |||| ||| || ||||||||||| Sbjct 37434501 AACGGCACACCAAGGCCCATATCCGCTGAACGCTGATACATCTGACACGAGAGCTCCCCT 37434560 Query 145864 CCCGCCACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCAT-GGCGGGCAGGTC 145922 |||||||||||||||| | | |||||| || || || ||||| || | ||||| Sbjct 37434561 TCCGCCACGTAGAACTGTGCGAACATGTGGCACGGAGGAAGCGCCATCAGCTTG-AGGTC 37434619 Query 145923 CGCCGGGTTCCAGGC 145937 | |||||||| || Sbjct 37434620 AGAAGGGTTCCAAGC 37434634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589998054251040