Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq5 100 2e-16 >seq5 Length=45943323 Score = 100 bits (110), Expect = 2e-16 Identities = 124/170 (73%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 97072 TGAGCATCTCCTAAAGTGTGAATAAATTCTCCAGGAACTAAATCAGTGACATGGGCGATC 97131 |||||||| || | || ||||| || || ||||| | |||| ||||| || | | Sbjct 37434408 TGAGCATCCCCAATGACATGGATAAAATCACCGGGAACAAGATCACACACATGAGCTAGC 37434467 Query 97132 ATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTAGTCCCATATCAGCT 97191 || ||||| | ||||| ||| |||||||||||| ||||| || || |||||||| ||| Sbjct 37434468 ATGCAAGTCAGAAGAGAGTAGGAAGCAATGTTAAACGGCACACCAAGGCCCATATCCGCT 37434527 Query 97192 GATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACATAAAACTG 97241 || | ||||| | |||||| || |||| || || ||| || ||||| Sbjct 37434528 GAACGCTGATACATCTGACACGAGAGCTCCCCTTCCGCCACGTAGAACTG 37434577 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346738878633320