Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq9 96.9 5e-15 >seq9 Length=38354807 Score = 96.9 bits (106), Expect = 5e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 || || ||||| || || || || ||||| || || || | || || || || ||||| Sbjct 21327517 AAGATCCAAGACAAGGAGGGAATCCCACCGGACCAGCAGCGTCTCATCTTCGCTGGAAAG 21327458 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 || | |||||| |||| || || | |||||| || ||||||||||| || ||| | ||| Sbjct 21327457 CAGCTCGAGGATGGTCGCACTTTGGCAGATTACAACATTCAAAAAGAGTCGACTCTTCAT 21327398 Query 124743 TTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| || ||| |||| || ||||| Sbjct 21327397 TTGGTGTTGCGTCTACGTGGAGGTAT 21327372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755355184396800