Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq9 127 2e-24 seq6 120 3e-22 seq3342 111 2e-19 seq7 111 2e-19 seq5 111 2e-19 seq3 111 2e-19 seq4 104 3e-17 seq1 84.2 3e-11 >seq9 Length=38354807 Score = 127 bits (140), Expect = 2e-24 Identities = 169/231 (73%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||| | || ||||||||||||||| | || ||| |||||||| |||||||| ||| Sbjct 21327375 CCTCCACGTAGACGCAACACCAAATGAAGAGTCGACTCTTTTTGAATGTTGTAATCTGCC 21327434 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 | ||| || | || || |||||||| |||||||| ||||| ||||||||||| | || Sbjct 21327435 AAAGTGCGACCATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGG 21327494 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCG---CTCGATTC 43132 | | ||||||||| ||| || || | ||| | | | |||||| ||| || Sbjct 21327495 ATTCCCTCCTTGTCTTGGATCTTAGCCTTCA-CGTTGTCAATGGTGTCGGAACTC---TC 21327550 Query 43133 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| || | |||||||| || || || || ||||| || ||||| ||||| Sbjct 21327551 CACCTCCAGAGTGATGGTCTTCCCGGTCAGTGTCTTAACGAAGATCTGCAT 21327601 Score = 118 bits (130), Expect = 1e-21 Identities = 165/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||| | | |||||||||||| || | ||| ||||||||| |||||||| ||||| Sbjct 21327147 CCTCCACGCAGACGCAACACCAAGTGAAGTGTAGACTCCTTTTGGATATTGTAGTCAGCG 21327206 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||||| |||| || |||||||| || || || || | | ||||||||| | || Sbjct 21327207 AGAGTCCTGCCGTCCTCGAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGG 21327266 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 43133 | | ||||||||| ||| || ||||| | | | ||||| |||| || Sbjct 21327267 ATACCCTCCTTGTCTTGGATCTTAGCTTTGACATTATCAATGGTGTCGGAGCTC---TCA 21327323 Query 43134 ACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || |||| ||||| || || || ||||| ||||| |||||||| ||||| Sbjct 21327324 ACTTCGAGGGTGATTGTCTTTCCGGTTAGTGTCTTGACAAAGATCTGCAT 21327373 Score = 107 bits (118), Expect = 2e-18 Identities = 151/208 (73%), Gaps = 8/208 (4%) Strand=Plus/Plus Query 42980 ATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTG 43039 |||||| || ||||||||| || ||||| ||||| ||||||| |||| || ||||| Sbjct 21303401 ATGCAAAGTTGACTCCTTTTGGATGTTGTAGTCAGCGAGAGTCCTGCCGTCTTCAAGCTG 21303460 Query 43040 CTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTT 43099 ||| || ||||| || | | ||||||||| | || | | |||||||||| ||| || Sbjct 21303461 CTTGCCTGCGAAGATCAACCTCTGCTGGTCCGGTGGGATCCCCTCCTTGTCCTGGATCTT 21303520 Query 43100 TTGTTTGAGCGTCGCC-ACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGC 43155 ||| | ||| | | | ||||| ||| |||||| |||| ||||| || || | Sbjct 21303521 AGCTTTAA-CGTTGTCGATGGTGTCTGAGCT---TTCCACCTCGAGGGTGATCGTCTTTC 21303576 Query 43156 CCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || || ||||| || ||||||||||| Sbjct 21303577 CGGTGAGAGTCTTAACGAAGATTTGCAT 21303604 Score = 105 bits (116), Expect = 8e-18 Identities = 162/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||| | | |||||||||||| || | ||| ||||||||| |||||||| ||||| Sbjct 21303150 CCTCCACGCAGACGCAACACCAAGTGAAGTGTAGACTCCTTTTGGATATTGTAGTCAGCG 21303209 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||||| |||| || |||||||| || || || || | | ||||||||| | || Sbjct 21303210 AGAGTCCTGCCGTCCTCGAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGG 21303269 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 43133 | | ||||||||| ||| || ||||| | | | ||||| |||| ||| Sbjct 21303270 ATACCCTCCTTGTCTTGGATCTTAGCTTTGACATTATCAATGGTGTCGGAGCTC---TCC 21303326 Query 43134 ACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || | || ||||| ||||| || | ||||| || || || ||||| Sbjct 21303327 ACCTCCAAAGTAATGGTCTTGCCGGTCAATGTCTTAACGAAAATCTGCAT 21303376 Score = 105 bits (116), Expect = 8e-18 Identities = 160/221 (72%), Gaps = 10/221 (5%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||| |||||||| || | || ||| || ||||| ||||||||||||| || || | Sbjct 21315358 ACGTAACACCAAGTGAAGGGTTGACTCTTTCTGAATGTTGTAATCAGCCAAGGTGCGACC 21315417 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || |||||||| |||||||| ||||| ||||||||||| | || | | |||||| Sbjct 21315418 ATCCTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGGATCCCCTCCTT 21315477 Query 43088 GTCCATGATTTTTTG-TTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCGACC 43142 |||| ||| | || | |||| ||| | | | ||||| |||| ||||| || | Sbjct 21315478 GTCC-TGAATCTTGGCCTTGA-CGTTGTCAATGGTGTCGGAGCTC---TCCACCTCCAAA 21315532 Query 43143 GTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||||| || || || || || ||||| | ||| || ||||| Sbjct 21315533 GTGATAGTCTTCCCGGTCAGTGTCTTAATAAAAATCTGCAT 21315573 Score = 95.1 bits (104), Expect = 1e-14 Identities = 153/219 (70%), Gaps = 6/219 (3%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 |||||||||||| || | || |||||| || || ||||| || || || || || | Sbjct 21302933 ACGCAACACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCTAGGGTGCGACC 21302992 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || |||||||| |||||||| ||||| |||||||| || | || | | ||||| Sbjct 21302993 ATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCTGGAGGGATCCCTTCCTT 21303052 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGT 43144 ||| ||| || ||| | | | | ||||| |||| ||||| || | || Sbjct 21303053 GTCTTGGATCTTGGCTTTCACATTATCAATGGTGTCCGAGCTC---TCCACCTCCAGTGT 21303109 Query 43145 GATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||||| || || || | ||||| || ||||||||||| Sbjct 21303110 GATGGTCTTACCAGTCAAGGTCTTGACGAAGATTTGCAT 21303148 Score = 95.1 bits (104), Expect = 1e-14 Identities = 153/219 (70%), Gaps = 6/219 (3%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 |||||||||||| || | || |||||| || || ||||| || || || || || | Sbjct 21326930 ACGCAACACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCTAGGGTGCGACC 21326989 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || |||||||| |||||||| ||||| |||||||| || | || | | ||||| Sbjct 21326990 ATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCTGGAGGGATCCCTTCCTT 21327049 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGT 43144 ||| ||| || ||| | | | | ||||| |||| ||||| || | || Sbjct 21327050 GTCTTGGATCTTGGCTTTCACGTTATCAATGGTGTCCGAGCTC---TCCACCTCCAGTGT 21327106 Query 43145 GATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||||| || || || | ||||| |||||||| ||||| Sbjct 21327107 GATGGTCTTACCAGTCAAGGTCTTGACAAAGATCTGCAT 21327145 >seq6 Length=53636577 Score = 120 bits (132), Expect = 3e-22 Identities = 168/233 (72%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 ||||||||| | || | |||||| || | || |||||| || || ||||| || || Sbjct 30640176 TCCTCCTCTCAGGCGGAGCACCAAGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCCGC 30640117 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 || |||| | |||| || |||||||| || ||||| || || ||||||||||| | || Sbjct 30640116 GAGCGTCCTCCCGTCTTCGAGCTGCTTCCCGGCGAAGATCAGACGCTGCTGGTCCGGTGG 30640057 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 43134 | | ||||||||| ||| | || | |||| | | | ||||||| ||||| | Sbjct 30640056 GATCCCTTCCTTGTCC-TGAATCTTGGCCTTGACATTGTCGATCGTGTCGGATGATTCGA 30639998 Query 43135 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTT 43187 | || | || || || || |||||||| || || |||||||| ||||||||| Sbjct 30639997 CCTCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACAAAGATCTGCATTTTT 30639945 >seq3342 Length=4839 Score = 111 bits (122), Expect = 2e-19 Identities = 142/196 (72%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || || || || ||| |||| || |||||||| || ||||| Sbjct 2601 CTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGCCCGTCCTCCAGCTGCTTCCCGGCGAA 2660 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || |||||||||||||| | || | || ||||||||| ||| || |||| | Sbjct 2661 GATCAGTCGCTGCTGGTCCGGAGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATT 2720 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | |||||| || || || |||| ||||| || || |||||||| || || || Sbjct 2721 GTCGATGGTGTCGGAGGACTCGACCTCGAGGGTGATTGTCTTCCCCGTTAGGGTTTTCAC 2780 Query 43172 AAAGATTTGCATTTTT 43187 ||||| ||||| ||| Sbjct 2781 GAAGATCTGCATCTTT 2796 >seq7 Length=27187321 Score = 111 bits (122), Expect = 2e-19 Identities = 144/194 (74%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||| || ||||| ||||| ||||||| ||| || | || ||||||||||| ||||| || Sbjct 456904 CTCTTTCTGAATGTTGTAGTCAGCCAAAGTGCGACCATCCTCTAGCTGCTTCCCAGCAAA 456845 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 ||||| ||||||||||| | || | || ||||||||| ||| |||| | ||||| || Sbjct 456844 GATGAGACGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCC-TGAATTTTGGCTTTGA-CG 456787 Query 43111 TCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTT 43169 | | | | |||| | |||||| || | |||||||| ||||| || | || || Sbjct 456786 TTGTCGATAGTGTTGGAACTTTCCACCTCAAGAGTGATGGTCTTGCCGGTCAAGGTTTTG 456727 Query 43170 ACAAAGATTTGCAT 43183 || ||||| ||||| Sbjct 456726 ACGAAGATCTGCAT 456713 Score = 111 bits (122), Expect = 2e-19 Identities = 159/220 (72%), Gaps = 8/220 (4%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||| | ||| | ||||| || ||| || ||||| |||||||| || ||||| || | Sbjct 639671 ACGAAGCACAAGATGCAGCGTAGACTCTTTCTGAATGTTGTAATCCGCAAGAGTACGTCC 639730 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 ||| ||||||||||| || ||||| || |||| || ||||| | || | | ||| || Sbjct 639731 GTCTTCTAGCTGCTTCCCGGCGAAGATAAGTCTTTGTTGGTCTGGTGGGATACCCTCTTT 639790 Query 43088 GTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCG 43143 |||| ||| | |||| |||| | | | |||||| |||| ||||| || | | Sbjct 639791 GTCC-TGAATCTTTGCCTTGACGTTATCGATCGTGTCAGAGCTC---TCCACCTCCAAAG 639846 Query 43144 TGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||||||||||||| || || ||||| ||||| || ||||| Sbjct 639847 TGATGGTTTTGCCAGTGAGGGTCTTCACAAAAATCTGCAT 639886 Score = 107 bits (118), Expect = 2e-18 Identities = 143/199 (72%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || || || || || |||| || ||||| || || ||||| Sbjct 17979960 CTCCTTCTGGATGTTGTAGTCGGCGAGTGTGCGGCCGTCTTCCAGCTGTTTCCCGGCGAA 17980019 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || |||||||||||||| | || | | ||||||||| ||| || ||||| | Sbjct 17980020 GATCAGTCGCTGCTGGTCCGGTGGGATTCCTTCCTTGTCCTGGATCTTGGCTTTGACATT 17980079 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | |||||| ||||| || |||| ||||| || || |||||||| || || || Sbjct 17980080 GTCGATGGTGTCGGATGATTCGACCTCGAGGGTGATCGTCTTCCCCGTTAGGGTTTTCAC 17980139 Query 43172 AAAGATTTGCATTTTTACG 43190 ||||| ||||| ||| || Sbjct 17980140 GAAGATCTGCATCTTTGCG 17980158 Score = 107 bits (118), Expect = 2e-18 Identities = 143/199 (72%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || || || || || |||| || ||||| || || ||||| Sbjct 18014086 CTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCTTCCAGCTGTTTCCCGGCGAA 18014145 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || |||||||||||||| | || | | |||||||||| ||| || |||| | Sbjct 18014146 GATCAGTCGCTGCTGGTCCGGTGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACATT 18014205 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | |||||| ||||| || |||| ||||| || || |||||||| || || || Sbjct 18014206 GTCGATGGTGTCGGATGATTCGACCTCGAGGGTGATTGTCTTCCCCGTTAGGGTTTTCAC 18014265 Query 43172 AAAGATTTGCATTTTTACG 43190 ||||| ||||| ||| || Sbjct 18014266 GAAGATCTGCATCTTTGCG 18014284 Score = 104 bits (114), Expect = 3e-17 Identities = 143/196 (73%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||||||||| |||||||| ||||| || || || | || || ||||||||||| ||||| Sbjct 639467 CTCCTTTTGGATATTGTAGTCAGCAAGCGTGCGACCATCCTCAAGCTGCTTACCGGCGAA 639526 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 ||||||| |||||| || | || | | ||||||||| ||| | || | |||| Sbjct 639527 GATGAGTCTCTGCTGATCTGGTGGGATCCCTTCCTTGTCC-TGAATCTTAGCCTTGACAT 639585 Query 43111 TCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 43167 | | | ||||| |||| || || || | |||||||||||||| || || |||| Sbjct 639586 TATCGATTGTGTCTGAGCTC---TCAACCTCCAAAGTGATGGTTTTGCCGGTGAGGGTCT 639642 Query 43168 TTACAAAGATTTGCAT 43183 | ||||| || ||||| Sbjct 639643 TAACAAAAATCTGCAT 639658 Score = 91.5 bits (100), Expect = 2e-13 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || ||||| | || | ||| | ||||| || ||| || ||||| ||||| ||||| Sbjct 639888 CCACCTCTGAGTCGAAGCACAAGATGCAGCGTAGACTCTTTCTGAATGTTGTAGTCAGCT 639947 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || || | || || ||||||||||| || || ||||| | ||||||||| | || Sbjct 639948 AGCGTGCGTCCATCCTCCAGCTGCTTACCGGCAAAGATGAGCCTCTGCTGGTCCGGTGGG 640007 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 43133 | | ||| || ||| ||| || |||| | | | ||||| |||| || Sbjct 640008 ATACCCTCTTTATCCTGGATCTTAGCCTTGACGTTATCAATGGTGTCTGAGCTC---TCA 640064 Query 43134 ACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || | || |||||||| || || || ||||| |||||||||||||| Sbjct 640065 ACCTCCAAAGTAATGGTTTTACCGGTGAGGGTCTTGACAAAGATTTGCAT 640114 Score = 82.4 bits (90), Expect = 9e-11 Identities = 136/195 (70%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| ||||| || || || | || || |||||||||||||| || Sbjct 640151 CTCCTTCTGGATGTTGTAGTCAGCGAGCGTGCGACCATCCTCCAGCTGCTTACCAGCAAA 640210 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || | |||||| || | || | || ||||||||| || || |||| | Sbjct 640211 AATAAGCCTCTGCTGATCCGGAGGGATGCCTTCCTTGTCCTGTATCTTCGCCTTGACATT 640270 Query 43112 CGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 43168 | | ||||| |||| || || |||| |||||||| || ||||| | ||||| Sbjct 640271 GTCAATAGTGTCGGAGCTC---TCAACCTCGAGAGTGATGGTCTTTCCCGTCAAAGTCTT 640327 Query 43169 TACAAAGATTTGCAT 43183 || ||||| ||||| Sbjct 640328 GACGAAGATCTGCAT 640342 >seq5 Length=45943323 Score = 111 bits (122), Expect = 2e-19 Identities = 148/203 (73%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || || ||||| || |||| || |||||||| || ||||| Sbjct 32128033 CTCCTTCTGGATGTTGTAGTCGGCGAGAGTGCGGCCGTCTTCCAGCTGCTTCCCGGCGAA 32127974 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||| |||||||||||||| | || | | ||||||||| ||| || |||| ||| Sbjct 32127973 TATCAGTCGCTGCTGGTCCGGAGGGATCCCTTCCTTGTCCTGGATCTTGGCCTTGA-CGT 32127915 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | |||||| || || || |||| || || || || |||||||| || || | Sbjct 32127914 TGTCGATGGTGTCGGAGGACTCGACCTCGAGGGTTATCGTCTTACCCGTTAGGGTTTTCA 32127855 Query 43171 CAAAGATTTGCATTTTTACGCCG 43193 | ||||| ||||| ||| || || Sbjct 32127854 CGAAGATCTGCATCTTTGCGGCG 32127832 >seq3 Length=29132933 Score = 111 bits (122), Expect = 2e-19 Identities = 142/196 (72%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || || || || ||| |||| || |||||||| || ||||| Sbjct 11118424 CTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGCCCGTCCTCCAGCTGCTTTCCGGCGAA 11118483 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || |||||||||||||| | || | || ||||||||| ||| || |||| | Sbjct 11118484 GATCAGTCGCTGCTGGTCCGGAGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATT 11118543 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | |||||| || || || |||| ||||| || || |||||||| || || || Sbjct 11118544 GTCGATGGTGTCGGAGGACTCGACCTCGAGGGTGATTGTCTTCCCCGTTAGGGTTTTCAC 11118603 Query 43172 AAAGATTTGCATTTTT 43187 ||||| ||||| ||| Sbjct 11118604 GAAGATCTGCATCTTT 11118619 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||| | | |||||||||||| || | || ||| || || || || ||||||||| Sbjct 9517120 CCTCCACGCAGACGCAACACCAAGTGAAGCGTAGACTCTTTCTGGATGTTATAATCAGCC 9517061 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 | || | |||| || |||||||| ||||||||||| | || ||||||||| | || Sbjct 9517060 AATGTTCTACCGTCCTCAAGCTGCTTTCCAGCGAATATCAATCTCTGCTGGTCCGGAGGG 9517001 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCAC 43135 | | |||||||||| ||| || |||| ||| | | | |||||| || || Sbjct 9517000 ATACCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCGGAGCCCTCAAC 9516942 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | || ||||| || || || | ||||| |||||||| ||||| Sbjct 9516941 CTCCAAAGTAATGGTCTTTCCGGTCAAAGTCTTGACAAAGATCTGCAT 9516894 Score = 98.7 bits (108), Expect = 1e-15 Identities = 154/219 (70%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 |||||||||||| || | || ||| || || || ||||| || || | || || | Sbjct 9517337 ACGCAACACCAAGTGAAGGGTCGACTCTTTCTGGATGTTGTAGTCGGCTAAGGTACGACC 9517278 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || |||||||| |||||||| ||||| || |||||||| | || | || ||||| Sbjct 9517277 ATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGTTGCTGGTCCGGAGGAATGCCTTCCTT 9517218 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGT 43144 ||| ||| || |||| | | | ||||| |||| ||||| || | || Sbjct 9517217 ATCCTGGATCTTGGCCTTGACATTGTCAATGGTGTCAGAGCTC---TCCACCTCCAGTGT 9517161 Query 43145 GATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||||| ||||| || || ||||| |||||||| ||||| Sbjct 9517160 GATGGTCTTGCCGGTAAGTGTCTTCACAAAGATCTGCAT 9517122 Score = 96.9 bits (106), Expect = 4e-15 Identities = 139/195 (71%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||||||||||| || || | || || |||||||| |||||||| Sbjct 16258433 CTCCTTCTGGATGTTGTAATCAGCCAAGGTGCGACCATCCTCGAGCTGCTTTCCAGCGAA 16258492 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| ||||||||||| | || | || ||||||||| ||| || ||||| | Sbjct 16258493 GATGAGACGCTGCTGGTCCGGAGGGATGCCTTCCTTGTCCTGGATCTTGGCTTTGACATT 16258552 Query 43112 CGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 43168 | | || || |||| ||||| || | || || || || || || | ||||| Sbjct 16258553 GTCAATAGTATCCGAGCTC---TCCACCTCCAAAGTAATAGTCTTTCCAGTCAAAGTCTT 16258609 Query 43169 TACAAAGATTTGCAT 43183 |||||||| ||||| Sbjct 16258610 GACAAAGATCTGCAT 16258624 Score = 87.8 bits (96), Expect = 2e-12 Identities = 90/118 (76%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 |||||| || | ||| |||||| || || ||||| ||||||| || || | || || Sbjct 2324132 CACCAAGTGAAGTGTTGACTCCTTCTGGATGTTGTAGTCAGCCAAGGTGCGACCATCCTC 2324191 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCC 43091 |||||||| |||||||| ||||| ||||||||||| | || | || ||||||||| Sbjct 2324192 AAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATGCCTTCCTTGTCC 2324249 Score = 84.2 bits (92), Expect = 3e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || || | || |||||||||||| || | || |||||| || || ||||| || || Sbjct 2316778 CCACCACGTAGACGCAACACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCTGCT 2316837 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||||| | || || |||||||| || || || || || | |||||| || | || Sbjct 2316838 AGAGTCCTTCCATCCTCAAGCTGCTTCCCGGCAAAGATAAGCCTCTGCTGATCCGGAGGG 2316897 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCAC 43135 | || ||||| ||| || | || | | | ||| | | | |||||| |||||| Sbjct 2316898 ATGCCTTCCTTATCC-TGGATCTTGGCCTTAACGTTGTCGATGGTGTCGGAGCTTTCCAC 2316956 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||| |||||||| || || || || || || || || || ||||| Sbjct 2316957 CTCGAGGGTGATGGTCTTTCCTGTGAGAGTTTTCACGAATATCTGCAT 2317004 Score = 84.2 bits (92), Expect = 3e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || || | || |||||||||||| || | || |||||| || || ||||| || || Sbjct 2324573 CCACCACGTAGACGCAACACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCTGCT 2324632 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||||| | || || |||||||| || || || || || | |||||| || | || Sbjct 2324633 AGAGTCCTTCCATCCTCAAGCTGCTTCCCGGCAAAGATAAGCCTCTGCTGATCCGGAGGG 2324692 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCAC 43135 | || ||||| ||| || | || | | | ||| | | | |||||| |||||| Sbjct 2324693 ATGCCTTCCTTATCC-TGGATCTTGGCCTTAACGTTGTCGATGGTGTCGGAGCTTTCCAC 2324751 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||| |||||||| || || || || || || || || || ||||| Sbjct 2324752 CTCGAGGGTGATGGTCTTTCCTGTGAGAGTTTTCACGAATATCTGCAT 2324799 >seq4 Length=50002108 Score = 104 bits (114), Expect = 3e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 ||||||||| | ||| | |||| || | || |||||| || || ||||| || || Sbjct 49702187 TCCTCCTCTCAGACGGAGAACCAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGC 49702128 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 || || || |||| || |||||||| || ||||| ||||| ||||||||||| | || Sbjct 49702127 GAGGGTGCGTCCGTCCTCGAGCTGCTTTCCGGCGAAAATGAGGCGCTGCTGGTCCGGAGG 49702068 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCA 43134 | || |||||||| ||| || |||| ||| | | | |||||| || || | Sbjct 49702067 GATGCCTTCCTTGTCTTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCGGAGGACTCGA 49702009 Query 43135 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | |||| || || || || |||||||| || || || ||||| ||||| Sbjct 49702008 CCTCGAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 49701960 Score = 93.3 bits (102), Expect = 5e-14 Identities = 136/191 (71%), Gaps = 1/191 (1%) Strand=Plus/Minus Query 42994 CCTTT-TGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| || || ||||| ||||||| ||| || | || || ||||| ||||| ||||| Sbjct 24965452 CCTTTCTGGATGTTGTAGTCAGCCAAAGTACGGCCATCTTCGAGCTGTTTACCGGCGAAG 24965393 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 || || |||||||| || | || | | || ||||| ||| || ||||| | Sbjct 24965392 ATCAGACGCTGCTGATCCGGAGGGATACCTTCTTTGTCTTGGATCTTGGCTTTGACATTG 24965333 Query 43113 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 | | |||||| || || || |||| |||||||| ||||||||||| || || || Sbjct 24965332 TCGATGGTGTCGGAGGACTCGACCTCGAGAGTGATGGTCTTGCCCGTTAGGGTTTTCACG 24965273 Query 43173 AAGATTTGCAT 43183 ||||| ||||| Sbjct 24965272 AAGATCTGCAT 24965262 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| |||| || || ||| ||||||||| |||| ||||||||||||||||| |||| Sbjct 28432000 AAAAAGTTTCGCCGTTGCCGGGGATCGAACCCGGGTCACCCGCGTGACAGGCGGAAATAC 28432059 Query 60117 TCACCACTATACTAC 60131 | ||||||||||||| Sbjct 28432060 TTACCACTATACTAC 28432074 >seq1 Length=26309735 Score = 84.2 bits (92), Expect = 3e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 |||||| || | ||| | |||| || | || |||||| || || |||||||| || Sbjct 10591979 TCCTCCCCTCAGACGGAGAACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGC 10591920 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 || |||| |||| || |||||||| || ||||| || |||||||||||||| | ||| Sbjct 10591919 GAGCGTCCTTCCGTCCTCCAGCTGCTTCCCGGCGAAGATCAGTCGCTGCTGGTCCGGCGG 10591860 Query 43076 CACGCTCTCCTTGTCCATGATTTT 43099 | | ||||||||| ||| || Sbjct 10591859 GATCCCTTCCTTGTCCTGGATCTT 10591836 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571741290941280