Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq2 96.9 3e-15 >seq2 Length=43799612 Score = 96.9 bits (106), Expect = 3e-15 Identities = 104/135 (77%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 20401 ATGGCTTTGCCTCCATGTCATATGCTATGC-CAATTTTACGTTGCTAATAATGAATTGTC 20459 ||||| | |||||||| || ||| | ||| || ||||||||||| ||| || | || Sbjct 41543539 ATGGCGCTTCCTCCATGCCACATGTT-TGCTCAGTTTTACGTTGCAAATGGAGAGCTCTC 41543481 Query 20460 GTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTGCAAG 20519 ||||||||||||||| || || ||||||||||| || ||||| ||||| || ||||| Sbjct 41543480 GTGTCAAATGTATCAGCGCTCAGCTGATATGGGTCTTGGTGTACCTTTTAACATTGCCTC 41543421 Query 20520 TTATGCGCTGCTTAC 20534 ||| | || ||||| Sbjct 41543420 TTACTCCCTTCTTAC 41543406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399132060672820