Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq9 84.2 2e-11 seq5 84.2 2e-11 >seq9 Length=38354807 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| ||||| | | |||| ||| || || || || || || ||||||||||| ||| Sbjct 21327603 CCTCCACGTAGACGCAAGACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGCC 21327662 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || || ||||||||| || ||||| ||| |||| | ||| || || ||| || Sbjct 21327663 AAAGTGCGACCATCTTCCAACTGCTTGCCGGCAAAGATCAATCTCTGCTGGTCCGGTGGG 21327722 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTG-CAACAGTGTCACCGGGCTCGGT 18277 | || |||||||| || | | |||| | | || ||| ||||| | ||| Sbjct 21327723 ATCCCCTCCTTATCTTGGATCT-TAGCTTTAACGTTGTCAATGGTGTCGGAGCTCTCCAC 21327781 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | |||||| | || |||||||| || || ||||| || ||||| Sbjct 21327782 CTCCAAAGTGATGGTCTTTCCGGTCAACGTCTTGACAAAGATCTGCAT 21327829 >seq5 Length=45943323 Score = 84.2 bits (92), Expect = 2e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| |||||| ||||| ||||| || ||||||||||| || | ||| ||| |||||| Sbjct 20718145 ACCAAGTGAAGAGTTGACTCTTTCTGGATGTTGTAGTCCGCAAGGGTTCTACCATCTTCA 20718204 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCC 18212 | ||||||||| || | || || || ||||||||| Sbjct 20718205 AGTTGTTTGCCAGCGAATATCAGCCTCTGTTGATCC 20718240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379294642129620