Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq2 123 5e-23 seq5 113 9e-20 >seq2 Length=43799612 Score = 123 bits (136), Expect = 5e-23 Identities = 148/198 (75%), Gaps = 5/198 (3%) Strand=Plus/Minus Query 35518 AGAA-AATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCACC 35576 |||| || || || ||| | |||| || ||| |||| ||||||||| || ||| | | Sbjct 41543601 AGAACAACCCTGACGATCGGCGGATTATAATGTCGGCTTGGAATCCTTCTGACCTTAAGC 41543542 Query 35577 TTATGGCTCTTCCTCCATGCCACATGACTGCTCAATTTTATGTGGCTAATGGAGAATTGT 35636 | ||||| |||||||||||||||||| |||||| ||||| || || |||||||| | | Sbjct 41543541 TGATGGCGCTTCCTCCATGCCACATGTTTGCTCAGTTTTACGTTGCAAATGGAGAGCTCT 41543482 Query 35637 CGTGCCAGTTGTATCAGCG--AAGCGGAGATGTCGGGTTGGGCGTGCCCTTCAATATTGC 35694 |||| || |||||||||| ||| || ||| || | || || || || || ||||| Sbjct 41543481 CGTGTCAAATGTATCAGCGCTCAGCTGATATG--GGTCTTGGTGTACCTTTTAACATTGC 41543424 Query 35695 ATCATACTCTCTTCTGAC 35712 || ||||| ||||| || Sbjct 41543423 CTCTTACTCCCTTCTTAC 41543406 >seq5 Length=45943323 Score = 113 bits (124), Expect = 9e-20 Identities = 179/252 (71%), Gaps = 6/252 (2%) Strand=Plus/Minus Query 35465 GATTATACTGGAAAGGGTATTGATCAATTGGCCAATATACTAAAGACCCTGAGAGAA-AA 35523 ||||||||||| | || ||||||| |||| || || | | | | | |||| || Sbjct 37434721 GATTATACTGGCCAAGGATTTGATCAGCTGGCAGATGTAATCGACAAGATCA-AGAACAA 37434663 Query 35524 TCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCACCTTATGGC 35583 ||| |||||| | | || || | |||| ||||| ||| || || | || ||||| Sbjct 37434662 TCCTGATGATCGGCGTATCATATTATCGGCTTGGAACCCTTCTGACCTCAAGCTGATGGC 37434603 Query 35584 TCTTCCTCCATGCCACATGACTGCTCAATTTTATGTGGCTAATGGAGAATTGTCGTGCCA 35643 |||||||| ||||||||| || || || || ||||| | || || | ||||| || Sbjct 37434602 GCTTCCTCCGTGCCACATGTTCGCACAGTTCTACGTGGCGGAAGGGGAGCTCTCGTGTCA 37434543 Query 35644 GTTGTATCAGCGA--AGCGGAGATGTCGGGTTGGGCGTGCCCTTCAATATTGCATCATAC 35701 | |||||||||| |||||| ||| || | || ||||| || || ||||| || ||| Sbjct 37434542 GATGTATCAGCGTTCAGCGGATATG--GGCCTTGGTGTGCCGTTTAACATTGCTTCCTAC 37434485 Query 35702 TCTCTTCTGACT 35713 |||||||||||| Sbjct 37434484 TCTCTTCTGACT 37434473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989448638515580