Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq4 163 4e-35 seq8 95.1 2e-14 seq6 89.7 6e-13 >seq4 Length=50002108 Score = 163 bits (180), Expect = 4e-35 Identities = 406/606 (67%), Gaps = 8/606 (1%) Strand=Plus/Minus Query 33576 ATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAAC 33635 |||| || |||||||||||||| || ||||||||||| || | ||||| || || Sbjct 15359141 ATCAGGCAGGCGAAATCGCAGTGAAGCCCCTCGTCTCTCGAGATCAGCTCGTTGGAGAAG 15359082 Query 33636 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAA 33695 || || || ||||| || |||||||| || ||||| || || || ||| |||||| Sbjct 15359081 GTCAGACCAGGCATGAGCCCACGCTTCTTGAGCCAGAAGATCGAGCAGAAGCTTCCGGAG 15359022 Query 33696 AAGAAGATTCCTTCTACTGCA-GCAAAGGCAATAAGTCTCT-CTCCATAACCGGCGCTGT 33753 |||||||| ||||| || ||| || ||||| | | |||| | | | | | | | | Sbjct 15359021 AAGAAGATCCCTTCCAC-GCAGGCGAAGGCGACGATCCTCTCCGCGAAAGTCTGAGAT-C 15358964 Query 33754 CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGG 33813 | | |||||||| ||||| | ||||||||| || || || || || || |||| Sbjct 15358963 CGTCGATCCACTTCATGGCCCATTGGGCCTTCTTCGCGACGCAGGGGATGGTCTCGATGG 15358904 Query 33814 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTAT 33873 | ||||||| || | || || |||| || | || || |||| || || |||| Sbjct 15358903 CCCGGAAGAGATGGTCCCTCTCCTTGTTATCCTTGATGTAGGTGTCGAGCAGGAGGCTAT 15358844 Query 33874 ACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGG 33933 |||| || || || ||||| ||||| || ||||| || |||||||| | ||||||| Sbjct 15358843 ACATCTCTGAGTGGATGTTCTCAATCGCGATCTGGAAGCCGTAGAAGGCACGCGCCTCGG 15358784 Query 33934 TAATCTGCACTTCTGTACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTG 33992 | ||| || || | ||| || || || | || || || ||||| || | Sbjct 15358783 AGACCTGGACGTC-GGACATGAACCGGGAGGCGAGGTTCTCCAGGACGATTCCGTCGGAG 15358725 Query 33993 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTATT 34051 || || || || || | || ||||| || || | || || | ||| || || | Sbjct 15358724 GCGGCGAAGAAGGCTAGGACGTGTTTGATGAAGTGGCGCTC-TCCGTCGTTGAGATTCTC 15358666 Query 34052 CCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGC 34111 ||| || | ||| || | ||| ||||| || | ||||| || || || || || Sbjct 15358665 CCAGTCGCGTGTGTCTCCGGAGAGATCGACTTCCTCGGCGGTCCAGAAGGAGGCTTCGGC 15358606 Query 34112 CTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGG 34171 ||| || ||||| | |||||| | | |||||||||||||| || ||||| | ||| Sbjct 15358605 CTTCTTGTACATCTCCCAGATCTGTGGGTATTGGATTGGGAACATGCAGAATCTGTCTGG 15358546 Query 34172 ATTTGG 34177 |||| Sbjct 15358545 GGTTGG 15358540 >seq8 Length=29681327 Score = 95.1 bits (104), Expect = 2e-14 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 63422 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63481 |||||| || || | ||| | ||| |||| ||| | || | || |||||||| |||||| Sbjct 8204240 TCCTCCTTGGTCAACGTAGCGAGCAGTGTCATTGAATACCCGCAGCATTGGAACAATACC 8204181 Query 63482 GTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGA 63541 || ||| | ||||| || || || |||| ||| | ||||| || || || || Sbjct 8204180 ATTCGATGTTCCATTTGTGCCACGAATGTAGCTTCCTGTTGCACGGATGTTGTGAACAGA 8204121 Query 63542 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63601 | |||||||||||| || |||| || | ||| || ||| || || ||||| || Sbjct 8204120 AACACCTATTCCCCCAGCTGATTTACTAATAACTGCACACTCTTTCAATGTTTCATATAT 8204061 Query 63602 GCCTTCTATGCTATCATCGATCATG 63626 || || ||||||||||| ||||| Sbjct 8204060 TCCCTCAATGCTATCATCCTTCATG 8204036 Score = 82.4 bits (90), Expect = 1e-10 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 63662 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63721 |||||| | ||| || | || ||||| || || |||||||| | ||| | | || Sbjct 8203910 AGTTCCTGAATTGAAGAGAGTCGGAGACGCATGAGTAAACCACCGCTGAGACATCAAATG 8203851 Query 63722 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63781 ||| || | || || || || | ||| || ||||| || || | || | ||| | Sbjct 8203850 GTAAGTTTTGATTGCGGAATCAACATCTTCTTTGTGAATGCCGACAGAAACCCTCATGAG 8203791 Query 63782 CATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63841 |||||||||||| |||||||| | ||| | | ||| || | ||| ||| | || | Sbjct 8203790 CATGTGCTGAGGCCTTTCAACCACTTTCCCATGGACTTTTAAGAGGTACGATCTCTCGAG 8203731 Query 63842 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63889 |||||| |||||||| |||| || ||| ||||| || || || || Sbjct 8203730 AGTTTTGAAACCAAAGTAGTCATACTCAAAATCTCGATCATAGATGAT 8203683 >seq6 Length=53636577 Score = 89.7 bits (98), Expect = 6e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 63422 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63481 |||||| || || | || | ||| || | ||| |||| | || |||||||| |||||| Sbjct 23786774 TCCTCCTTGGTCGACATAACGAGCAGTATCATTGAAAACCCGCAGCATTGGAACAATACC 23786715 Query 63482 GTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGA 63541 || ||| ||||| || || ||| || | |||| ||||| || || || ||| Sbjct 23786714 ATTAGATTCTCCATTAGTGCCACGGATGTAACTTCCAGAAGCACGGATGTTGTGAACTGA 23786655 Query 63542 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63601 | |||||| ||||| || |||| || | || || ||| || || ||||| || Sbjct 23786654 AACACCTATACCCCCAGCTGATTTACTAATAACCGCACACTCTTTCAATGTATCATATAT 23786595 Query 63602 GCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCT 63643 ||||| ||||||||||| ||||| | ||||| ||||| Sbjct 23786594 TCCTTCAATGCTATCATCCTTCATGCAGATCAGAAAGCAGCT 23786553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629733550841280