Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq4 132 6e-26 seq8 118 1e-21 >seq4 Length=50002108 Score = 132 bits (146), Expect = 6e-26 Identities = 388/587 (66%), Gaps = 12/587 (2%) Strand=Plus/Minus Query 36152 ATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAAC 36211 |||| || |||||||||||||| || ||||||||||| || | |||||||| || Sbjct 15359141 ATCAGGCAGGCGAAATCGCAGTGAAGCCCCTCGTCTCTCGAGATCAGCTCGTTGGAGAAG 15359082 Query 36212 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGA 36270 || || || ||||| || |||||||| || ||||| || || || ||| || ||| || Sbjct 15359081 GTCAGACCAGGCATGAGCCCACGCTTCTTGAGCCAGAAGATCGA-GCAGAAGCTTCCGGA 15359023 Query 36271 AAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAA--CCG-GCACT 36327 ||||| || ||||| || || ||||| | | ||||| | || | | | | Sbjct 15359022 GAAGAAGATCCCTTCCACGCAGGCGAAGGCGACGATCCTCTCCGCGAAAGTCTGAGATCC 15358963 Query 36328 GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTAT 36387 ||| |||||||| ||||| | ||||||||| || || || || ||||| || Sbjct 15358962 GTC---GATCCACTTCATGGCCCATTGGGCCTTCTTCGCGACGCAGGGGATGGTCTCGAT 15358906 Query 36388 AGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACT 36447 || ||||||| || | || || |||| || | || || || | || || || Sbjct 15358905 GGCCCGGAAGAGATGGTCCCTCTCCTTGTTATCCTTGATGTAGGTGTCGAGCAGGAGGCT 15358846 Query 36448 ATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTC 36507 |||||| || || || ||||| ||||| || || || || |||||||| | ||||| Sbjct 15358845 ATACATCTCTGAGTGGATGTTCTCAATCGCGATCTGGAAGCCGTAGAAGGCACGCGCCTC 15358786 Query 36508 GGTAATCTGTACTTCTGTACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCAC 36566 || | ||| || || | ||| || || || | || || || |||||||| Sbjct 15358785 GGAGACCTGGACGTC-GGACATGAACCGGGAGGCGAGGTTCTCCAGGACGATTCCGTCGG 15358727 Query 36567 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTT-AGTTTA 36625 ||| || || || || | || ||||| || || | || | | ||| || || Sbjct 15358726 AGGCGGCGAAGAAGGCTAGGACGTGTTTGATGAAGTGGCGCTC-TCCGTCGTTGAGATTC 15358668 Query 36626 TTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCT 36685 | ||| || | ||| || | ||| ||||| || | ||||| || || || || Sbjct 15358667 TCCCAGTCGCGTGTGTCTCCGGAGAGATCGACTTCCTCGGCGGTCCAGAAGGAGGCTTCG 15358608 Query 36686 GCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAAT 36732 ||||| || ||||| | |||||| | | ||||| ||||| || || Sbjct 15358607 GCCTTCTTGTACATCTCCCAGATCTGTGGGTATTGGATTGGGAACAT 15358561 >seq8 Length=29681327 Score = 118 bits (130), Expect = 1e-21 Identities = 149/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 66215 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 66274 |||||| || || | ||| | ||| |||| ||| | || | || |||||||| |||||| Sbjct 8204240 TCCTCCTTGGTCAACGTAGCGAGCAGTGTCATTGAATACCCGCAGCATTGGAACAATACC 8204181 Query 66275 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGA 66334 ||| ||||| ||||| || || || |||||||| ||||||| || || || || Sbjct 8204180 ATTCGATGTTCCATTTGTGCCACGAATGTAGCTTCCTGTTGCACGGATGTTGTGAACAGA 8204121 Query 66335 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 66394 | |||||||||||| || |||| || | ||| || ||| || || ||||| || Sbjct 8204120 AACACCTATTCCCCCAGCTGATTTACTAATAACTGCACACTCTTTCAATGTTTCATATAT 8204061 Query 66395 GCCCTCTATACTATCATCCATCATG 66419 ||||| || ||||||||| ||||| Sbjct 8204060 TCCCTCAATGCTATCATCCTTCATG 8204036 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658084966839840