Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq5 109 5e-19 seq2 96.9 3e-15 >seq5 Length=45943323 Score = 109 bits (120), Expect = 5e-19 Identities = 144/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 21000 ACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGG 21059 || ||||| | || | ||||| || | |||| || ||||||||||| || || ||| Sbjct 37434456 ACATGAGCTAGCATGCAAGTCAGAAGAGAGTAGGAAGCAATGTTAAACGGCACACCAAGG 37434515 Query 21060 CCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACGTAAAAC 21119 ||||| || || || | ||| |||| ||| || || |||||||| |||||||| ||| Sbjct 37434516 CCCATATCCGCTGAACGCTGATACATCTGACACGAGAGCTCCCCTTCCGCCACGTAGAAC 37434575 Query 21120 TGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCACGCG 21179 || || | ||| || ||||| || |||||| || |||||| | |||||||| || Sbjct 37434576 TGTGCGAACATGTGGCACGGAGGAAGCGCCATCAGCTTGAGGTCAGAAGGGTTCCAAGCC 37434635 Query 21180 CACATAACGATGCGCCGATC 21199 | | | ||| |||||||| Sbjct 37434636 GATAATATGATACGCCGATC 37434655 >seq2 Length=43799612 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 20999 GACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAG 21058 ||||||||| | | | || || |||| ||| ||| |||||||| || || || || Sbjct 41543387 GACGTGAGCTAGAATGCATGTAAGAAGGGAGTAAGAGGCAATGTTAAAAGGTACACCAAG 41543446 Query 21059 GCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACGTAAAA 21118 ||||| || || || | ||| |||| || || || ||||| || || |||||||| Sbjct 41543447 ACCCATATCAGCTGAGCGCTGATACATTTGACACGAGAGCTCTCCATTTGCAACGTAAAA 41543506 Query 21119 CTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCACGC 21178 |||| || | ||| || ||||| || |||||| || ||||| | || ||||| || Sbjct 41543507 CTGAGCAAACATGTGGCATGGAGGAAGCGCCATCAGCTTAAGGTCAGAAGGATTCCAAGC 41543566 Query 21179 GCACATAACGATGCGCCGATCGT 21201 |||| | || |||||||||| Sbjct 41543567 CGACATTATAATCCGCCGATCGT 41543589 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427720340460480