Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq4 174 2e-38 seq8 113 6e-20 seq6 98.7 1e-15 >seq4 Length=50002108 Score = 174 bits (192), Expect = 2e-38 Identities = 410/608 (67%), Gaps = 12/608 (2%) Strand=Plus/Minus Query 49954 ATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAAC 50013 |||| || |||||||||||||| || ||||||||||| || || |||||||| || Sbjct 15359141 ATCAGGCAGGCGAAATCGCAGTGAAGCCCCTCGTCTCTCGAGATCAGCTCGTTGGAGAAG 15359082 Query 50014 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGA 50072 || || || ||||| || |||||||| || ||||| || || || ||| || || || Sbjct 15359081 GTCAGACCAGGCATGAGCCCACGCTTCTTGAGCCAGAAGATCGA-GCAGAAGCTTCCGGA 15359023 Query 50073 AAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAA--CTG-GCGCT 50129 |||||||| ||||| || ||| ||||| || | ||||| | || ||| | | Sbjct 15359022 GAAGAAGATCCCTTCCACGCAGGCGAAGGCGACGATCCTCTCCGCGAAAGTCTGAGATCC 15358963 Query 50130 GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTAT 50189 ||| |||||||| ||||| | ||||||||| || || || || || || || Sbjct 15358962 GTC---GATCCACTTCATGGCCCATTGGGCCTTCTTCGCGACGCAGGGGATGGTCTCGAT 15358906 Query 50190 GGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACT 50249 ||| ||||||| || | || || |||| || | || || |||| || || || Sbjct 15358905 GGCCCGGAAGAGATGGTCCCTCTCCTTGTTATCCTTGATGTAGGTGTCGAGCAGGAGGCT 15358846 Query 50250 ATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTC 50309 |||||| || || || ||||| ||||| || ||||| || |||||||| | ||||| Sbjct 15358845 ATACATCTCTGAGTGGATGTTCTCAATCGCGATCTGGAAGCCGTAGAAGGCACGCGCCTC 15358786 Query 50310 GGTAATCTGCACTTCTGTACA-AAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCAC 50368 || | ||| || || | ||| || || || | || || || |||||||| Sbjct 15358785 GGAGACCTGGACGTC-GGACATGAACCGGGAGGCGAGGTTCTCCAGGACGATTCCGTCGG 15358727 Query 50369 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTT-AGTTTA 50427 ||| || || || || | || ||||| || || || || | | ||| || || Sbjct 15358726 AGGCGGCGAAGAAGGCTAGGACGTGTTTGATGAAGTGGCGCTC-TCCGTCGTTGAGATTC 15358668 Query 50428 TTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCT 50487 | ||| || | ||| || | ||| ||||| || | ||||| || || || || Sbjct 15358667 TCCCAGTCGCGTGTGTCTCCGGAGAGATCGACTTCCTCGGCGGTCCAGAAGGAGGCTTCG 15358608 Query 50488 GCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTT 50547 ||||| || ||||| | |||||| | | |||||||||||||| || ||||| | | Sbjct 15358607 GCCTTCTTGTACATCTCCCAGATCTGTGGGTATTGGATTGGGAACATGCAGAATCTGTCT 15358548 Query 50548 GGATTTGG 50555 || |||| Sbjct 15358547 GGGGTTGG 15358540 >seq8 Length=29681327 Score = 113 bits (124), Expect = 6e-20 Identities = 148/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153 |||||| || || | ||| | ||| |||| ||| | || | || |||||||| |||||| Sbjct 8204240 TCCTCCTTGGTCAACGTAGCGAGCAGTGTCATTGAATACCCGCAGCATTGGAACAATACC 8204181 Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213 ||| ||||| ||||| || || || |||||||| | ||||| || || || || Sbjct 8204180 ATTCGATGTTCCATTTGTGCCACGAATGTAGCTTCCTGTTGCACGGATGTTGTGAACAGA 8204121 Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273 | |||||||||||| || |||| || | ||| || ||| || || ||||| || Sbjct 8204120 AACACCTATTCCCCCAGCTGATTTACTAATAACTGCACACTCTTTCAATGTTTCATATAT 8204061 Query 80274 GCCCTCTATGCTATCATCAATCATG 80298 ||||| ||||||||||| ||||| Sbjct 8204060 TCCCTCAATGCTATCATCCTTCATG 8204036 Score = 87.8 bits (96), Expect = 3e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 80334 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 80393 |||||| | ||| || | || ||||| || || |||||||| | ||||| | || Sbjct 8203910 AGTTCCTGAATTGAAGAGAGTCGGAGACGCATGAGTAAACCACCGCTGAGACATCAAATG 8203851 Query 80394 GTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAA 80453 ||| || | || || || || | ||| || ||||| || || | || | ||| | Sbjct 8203850 GTAAGTTTTGATTGCGGAATCAACATCTTCTTTGTGAATGCCGACAGAAACCCTCATGAG 8203791 Query 80454 CATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAA 80513 |||||||||||| |||||||| | || || | ||| || | ||| ||| | || | Sbjct 8203790 CATGTGCTGAGGCCTTTCAACCACTTTCCCATGGACTTTTAAGAGGTACGATCTCTCGAG 8203731 Query 80514 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 80561 |||||| |||||||| |||| || ||| ||||| || || || || Sbjct 8203730 AGTTTTGAAACCAAAGTAGTCATACTCAAAATCTCGATCATAGATGAT 8203683 >seq6 Length=53636577 Score = 98.7 bits (108), Expect = 1e-15 Identities = 155/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153 |||||| || || | || | ||| || | ||| |||| | || |||||||| |||||| Sbjct 23786774 TCCTCCTTGGTCGACATAACGAGCAGTATCATTGAAAACCCGCAGCATTGGAACAATACC 23786715 Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213 ||| ||| ||||| || || ||| || |||||| ||||| || || || ||| Sbjct 23786714 ATTAGATTCTCCATTAGTGCCACGGATGTAACTTCCAGAAGCACGGATGTTGTGAACTGA 23786655 Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273 | |||||| ||||| || |||| || | || || ||| || |||||||| || Sbjct 23786654 AACACCTATACCCCCAGCTGATTTACTAATAACCGCACACTCTTTCAATGTATCATATAT 23786595 Query 80274 GCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCT 80315 || || ||||||||||| ||||| | ||||| ||||| Sbjct 23786594 TCCTTCAATGCTATCATCCTTCATGCAGATCAGAAAGCAGCT 23786553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718172947028640