Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq4 95.1 9e-15 seq9 91.5 1e-13 seq7 87.8 1e-12 >seq4 Length=50002108 Score = 95.1 bits (104), Expect = 9e-15 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 42931 TTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGT 42990 ||||| || | ||| ||||| | || || | ||||| ||||| || ||||||| ||| Sbjct 45703474 TTGTAGTCAGCCAAAGTACGGCCATCCTCGAGCTGTTTACCGGCGAAGATCAATCTCTGC 45703415 Query 42991 TGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCG 43050 ||||| | || | ||||||||| || |||| | ||||| || | | |||||| Sbjct 45703414 TGATCCGGAGGGATACCTTCTTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTGTCG 45703355 Query 43051 CCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 | |||||| || | || || || ||||||||||| |||||||| || || ||||| Sbjct 45703354 GAGGACTCGACCTCGAGGGTGATGGTCTTTCCGGTTAGGGTTTTCACGAAGATCTGCATC 45703295 Query 43111 TT 43112 || Sbjct 45703294 TT 45703293 >seq9 Length=38354807 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 |||||||||||| | |||||||| || | || ||||||||| | |||||| || | Sbjct 21327146 GCCTCCACGCAGACGCAACACCAAGTGAAGTGTAGACTCCTTTTGGATATTGTAGTCAGC 21327205 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 | || | |||| || | || || |||||||| ||||| | ||| || || | || Sbjct 21327206 GAGAGTCCTGCCGTCCTCGAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGAGG 21327265 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGA 43060 | ||| || || || |||| ||||||| | ||| |||||| ||| ||| | Sbjct 21327266 GATACCCTCCTTGTCTTGGATCTTAGCTTTGACATTATCAATGGTGTCG-GAGCTCTCAA 21327324 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | || | || || || ||||||||||| || || ||||| || ||||| Sbjct 21327325 CTTCGAGGGTGATTGTCTTTCCGGTTAGTGTCTTGACAAAGATCTGCAT 21327373 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 |||||||| || | || ||||| |||| || |||||| || | ||||| || | | Sbjct 21327603 CCTCCACGTAGACGCAAGACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGCC 21327662 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || || | || ||||| || ||||||||||| ||||||| ||| || || | || Sbjct 21327663 AAAGTGCGACCATCTTCCAACTGCTTGCCGGCAAAGATCAATCTCTGCTGGTCCGGTGGG 21327722 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGAC 43061 | || || || || |||| |||| || || ||| |||||| ||| ||| || Sbjct 21327723 ATCCCCTCCTTATCTTGGATCTTAGCTTTAACGTTGTCAATGGTGTCG-GAGCTCTCCAC 21327781 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || |||||||| | || || ||||| || ||||| Sbjct 21327782 CTCCAAAGTGATGGTCTTTCCGGTCAACGTCTTGACAAAGATCTGCAT 21327829 >seq7 Length=27187321 Score = 87.8 bits (96), Expect = 1e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 42906 ATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTG 42965 ||||| ||| |||||| || | ||||| |||| ||| |||||| | || || | || Sbjct 640367 ATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCCAAGGTACGTCCATCCTCGAGCTG 640426 Query 42966 TTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAA 43025 ||| ||||| || || | | ||| || || | || | |||||| || || |||| Sbjct 640427 TTTACCGGCGAAGATGAGCCTCTGCTGGTCCGGAGGAATACCTTCCTTGTCCTGGATCTT 640486 Query 43026 CTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGACGTCTACCGTTATAGTTTTTCCGG 43084 | ||||| | | | |||||| ||| |||||| || | || || || || |||| Sbjct 640487 AGCCTTGACGTTATCGATGGTGTCGG-AGCTCTCGACTTCGAGAGTGATGGTCTTGCCGG 640545 Query 43085 TTAGAGTTTTCACAAAAATTTGCAT 43109 | ||||||||||| ||||||||||| Sbjct 640546 TGAGAGTTTTCACGAAAATTTGCAT 640570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381319978571208