Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq4 132 7e-26 >seq4 Length=50002108 Score = 132 bits (146), Expect = 7e-26 Identities = 377/565 (67%), Gaps = 26/565 (5%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||||| |||||||| ||||| | |||||||| ||||| | ||| || |||||||| Sbjct 15358585 ATCTGGGAGATGTACAAGAAGGCCGAAGCCTCCTTCTGGACCGCCGAGGAAGTCGATCTC 15358644 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 ||| ||| ||| ||||||| || | | || ||||| | || || Sbjct 15358645 TCCGGAGACACACGCGACTGGGAGAATC---TCAACGACGGAGAGCGCCACTTCATCAAA 15358701 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGA 125198 ||| | | |||||||| |||| |||||| ||||||||| || || || | || Sbjct 15358702 CACGTCCTAGCCTTCTTCGCCGCCTCCGACGGAATCGTCCTGGAGAACCTCGCCTCCCGG 15358761 Query 125199 TTC-TCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTT-TACGGATTCCAAATCATGA 125256 ||| | || || | ||| |||| | ||||| || ||||| ||||| ||| || Sbjct 15358762 TTCATGTCCGACGTCCAGGTCTCC-GAGGCG-CGTGCCTTCTACGGCTTCCAGATCGCGA 15358819 Query 125257 TTGAGAACGTGCACTCGGAAATGTA----CTCTACACTGATTGACATGTACATTCGCGAT 125312 |||||||| | ||||| || ||||| ||| ||| | |||| ||||| ||| Sbjct 15358820 TTGAGAACATCCACTCAGAGATGTATAGCCTC----CTGCTCGACACCTACATCAAGGAT 15358875 Query 125313 CCGCAACGTAA---ACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAA 125369 ||| | | || ||| ||||| || ||||| || | || | | || Sbjct 15358876 AA-CAAGGAGAGGGAC-CAT-CTCTTCCGGGCCATCGAGACCATCCCCTGCGTCGCGAAG 15358932 Query 125370 AAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTG 125429 ||||| ||||||| || ||||||||| | || ||| ||| || || | Sbjct 15358933 AAGGCCCAATGGGCCATGAAGTGGATCGACGGATCTCAGACTTT---CGCGGAGAGGATC 15358989 Query 125430 GTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTT-TGCGGCCATCTTTTG 125488 || || |||||| ||| || || |||||||| || || || || ||| | ||||| || Sbjct 15358990 GTCGCCTTCGCCTGCGTGGAAGGGATCTTCTTCTCCGGAAGCTTCTGCT-CGATCTTCTG 15359048 Query 125489 GCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGA 125548 |||||||||||| || |||||||| || ||||| | |||||| | || || |||| Sbjct 15359049 GCTCAAGAAGCGTGGGCTCATGCCTGGTCTGACCTTCTCCAACGAGCTGATCTCGAGAGA 15359108 Query 125549 CGAGGGCCTACACTGTGACTTTGCC 125573 |||||| || ||||| || || ||| Sbjct 15359109 CGAGGGGCTTCACTGCGATTTCGCC 15359133 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740960305649760