Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq9 84.2 2e-11 seq7 84.2 2e-11 >seq9 Length=38354807 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 15138 CACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATC-GCTT 15196 |||| | || | ||| || || |||||||| || ||||| || ||||||||||| || Sbjct 21315348 CACCGCGCAGACGTAACACCAAGTGAAGGGTTGACTCTTTCTGAATGTTGTAATCAGCCA 21315407 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | | || || | || ||||||||| | || | ||| || ||||| ||| Sbjct 21315408 AG-GTGCGACCATCCTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGG 21315466 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || || || ||||| ||| ||| ||| || | || ||||| ||| | || || Sbjct 21315467 ATCCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCAATGGTGTCGGAGCTCTCCACC 21315526 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || || || || || || ||||| || || | |||||| |||||| Sbjct 21315527 TCCAAAGTGATAGTCTTCCCGGTCAGTGTCTTAATAAAAATCTGCATA 21315574 >seq7 Length=27187321 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| || || || ||||| || ||||||||||| ||| | | ||||||||| || Sbjct 639683 ATGCAGCGTAGACTCTTTCTGAATGTTGTAATCCGCAAGAGTACGTCCGTCTTCTAGCTG 639742 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TT 15278 || || ||| | || | | ||||||||| ||| || || |||||||| ||| || Sbjct 639743 CTTCCCGGCGAAGATAAGTCTTTGTTGGTCTGGTGGGATACCCTCTTTGTCCTGAATCTT 639802 Query 15279 TGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTG 15338 ||| ||| || | || || || || | || || || || || |||||||| || | Sbjct 639803 TGC-CTTGACGTTATCGATCGTGTCAGAGCTCTCCACCTCCAAAGTGATGGTTTTGCCAG 639861 Query 15339 TCAGAGTTTTTACAAAAATTTGCAT 15363 | || || || |||||||| ||||| Sbjct 639862 TGAGGGTCTTCACAAAAATCTGCAT 639886 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362132075506116