Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq9 89.7 4e-13 seq7 86.0 5e-12 seq3 82.4 6e-11 >seq9 Length=38354807 Score = 89.7 bits (98), Expect = 4e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 || |||||||| || |||||||| || |||| ||| || ||||||| ||||| || || Sbjct 21328089 GTCGACTCCTTCTGGATATTGTAGTCAGCCAAGGTTCTGCCGTCCTCGAGCTGCTTTCCG 21328148 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTC 18948 || | ||||| |||||||||||| ||| | |||||| ||||| Sbjct 21328149 GCGAAGATAAGCCTCTGCTGATCCGGGGGAATGCCCTCCTTGTC 21328192 >seq7 Length=27187321 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 18830 AACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC 18889 || || | ||| | ||| |||||||| || || ||||| || || | || | ||| Sbjct 640131 AAGACAAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCAGCGAGCGTGCGACCATCC 640190 Query 18890 TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCG 18949 |||||||| ||||| ||| ||||||| |||||||||||| || | ||| || ||||| Sbjct 640191 TCCAGCTGCTTACCAGCAAAAATAAGCCTCTGCTGATCCGGAGGGATGCCTTCCTTGTCC 640250 Query 18950 GCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTT 19009 || ||| || || | | | | ||| ||| ||| |||| || ||||| Sbjct 640251 TGTATCTTCGCCTTGACATTGTCAATAGTGTCGGAGCTCTCAACCTCGAGAGTGATGGTC 640310 Query 19010 TTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || || ||||| ||||| || || ||||| Sbjct 640311 TTTCCCGTCAAAGTCTTGACGAAGATCTGCAT 640342 >seq3 Length=29132933 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 18830 AACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC 18889 ||||||| ||| | ||||||||||| || || ||||| || || | || | | ||| Sbjct 2316793 AACACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCTGCTAGAGTCCTTCCATCC 2316852 Query 18890 TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCG 18949 || ||||| || || ||| | ||||| |||||||||||| || | ||| || || || Sbjct 2316853 TCAAGCTGCTTCCCGGCAAAGATAAGCCTCTGCTGATCCGGAGGGATGCCTTCCTTATCC 2316912 Query 18950 GCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTT 19009 || || || || | | ||| || ||| ||| |||| ||| ||||| Sbjct 2316913 TGGATCTTGGCCTTAACGTTGTCGATGGTGTCGGAGCTTTCCACCTCGAGGGTGATGGTC 2316972 Query 19010 TTACCTGTTAAAGTTTTGACAAAAATTTGCATTTTAAA 19047 || ||||| | |||||| || || || ||||| | ||| Sbjct 2316973 TTTCCTGTGAGAGTTTTCACGAATATCTGCATCTGAAA 2317010 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 18830 AACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC 18889 ||||||| ||| | ||||||||||| || || ||||| || || | || | | ||| Sbjct 2324588 AACACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCTGCTAGAGTCCTTCCATCC 2324647 Query 18890 TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCG 18949 || ||||| || || ||| | ||||| |||||||||||| || | ||| || || || Sbjct 2324648 TCAAGCTGCTTCCCGGCAAAGATAAGCCTCTGCTGATCCGGAGGGATGCCTTCCTTATCC 2324707 Query 18950 GCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTT 19009 || || || || | | ||| || ||| ||| |||| ||| ||||| Sbjct 2324708 TGGATCTTGGCCTTAACGTTGTCGATGGTGTCGGAGCTTTCCACCTCGAGGGTGATGGTC 2324767 Query 19010 TTACCTGTTAAAGTTTTGACAAAAATTTGCATTTTAAA 19047 || ||||| | |||||| || || || ||||| | ||| Sbjct 2324768 TTTCCTGTGAGAGTTTTCACGAATATCTGCATCTGAAA 2324805 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414518858378344