Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq9 82.4 6e-11 >seq9 Length=38354807 Score = 82.4 bits (90), Expect = 6e-11 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 ||||| |||| | ||| ||||| || || ||||| || || || |||||||| || || Sbjct 21327603 CCTCCACGTAGACGCAAGACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGCC 21327662 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATC-GACGGG 20100 | ||| | ||||||||| || ||||| ||| | || | ||||| || || | ||| Sbjct 21327663 AAAGTGCGACCATCTTCCAACTGCTTGCCGGCAAAGATCAATCTCTGCTGGTCCGGTGGG 21327722 Query 20101 CACGCCTTCTT-TGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGT-TCC 20158 | ||| ||| | | || || || ||| || | | ||| | ||| || | ||| Sbjct 21327723 ATCCCCTCCTTATCTTGG--ATCTTAGCTTTAACGTTGTCAATGGTGTCGG-AGCTCTCC 21327779 Query 20159 GTTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||| || ||||| || ||||||||||| |||||||| || ||||| Sbjct 21327780 ACCTCCAAAGTGATGGTCTTTCCGGTCAACGTCTTGACAAAGATCTGCAT 21327829 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419532605935956