Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq9 102 7e-17 seq5 102 7e-17 seq7 98.7 8e-16 seq3 98.7 8e-16 seq3342 96.9 3e-15 seq1946 95.1 1e-14 seq6 91.5 1e-13 seq4 91.5 1e-13 >seq9 Length=38354807 Score = 102 bits (112), Expect = 7e-17 Identities = 157/224 (70%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 48503 CCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAAT 48562 ||||||| | |||||| || ||||| || ||| || |||||||||||||||||||| Sbjct 21315350 CCGCGCAGACGTAACACCAAGTGAAGGGTTGACTCTTTCTGAATGTTGTAATCAGCCAAG 21315409 Query 48563 TGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACA 48622 || | ||||| |||||||| || || | || | ||||||||| ||| || | Sbjct 21315410 GTGCGACCATCCTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGGATC 21315469 Query 48623 CTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCG 48682 | ||||||||| ||| || ||||| | ||||| |||| |||| ||| Sbjct 21315470 CCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCAATGGTGTCGGAGCTCTCCACCTCC 21315529 Query 48683 ACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 | || || || || ||||| || || || | |||||||||||| Sbjct 21315530 AAAGTGATAGTCTTCCCGGTCAGTGTCTTAATAAAAATCTGCAT 21315573 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 |||||| || | | ||||| |||||||| || ||| ||||||||||||||||| || Sbjct 21327374 ACCTCCACGTAGACGCAACACCAAATGAAGAGTCGACTCTTTTTGAATGTTGTAATCTGC 21327433 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 ||| || | ||||| |||||||| || || | || | ||||||||| ||| || Sbjct 21327434 CAAAGTGCGACCATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGTGG 21327493 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | |||||||| || || ||| | | ||||| |||| | |||| Sbjct 21327494 GATTCCCTCCTTGTCTTGGATCTTAGCCTTCACGTTGTCAATGGTGTCGGAACTCTCCAC 21327553 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| | || ||||| || ||||| || || || || || |||||||| Sbjct 21327554 CTCCAGAGTGATGGTCTTCCCGGTCAGTGTCTTAACGAAGATCTGCAT 21327601 >seq5 Length=45943323 Score = 102 bits (112), Expect = 7e-17 Identities = 150/208 (72%), Gaps = 6/208 (3%) Strand=Plus/Minus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTCCAGCT 48581 |||||| || |||||| || |||||||| || || | | || || |||| ||||||| Sbjct 32128045 ATGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGAGTGCGGC-CGTCTTCCAGCT 32127987 Query 48582 GCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTT 48641 |||| ||| || | || | |||||||| ||| || | | |||||||||| || | Sbjct 32127986 GCTTCCCGGCGAATATCAGTCGCTGCTGGTCCGGAGGGATCCCTTCCTTGTCCTGGATCT 32127927 Query 48642 TCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACC 48699 | ||||| | | || ||||| |||| ||||| ||||| ||||| || ||||| Sbjct 32127926 TGGCCTTGACGTTGTCG--ATGGTGTCGGAGGACTCGACCTCGAGGGTTATCGTCTTACC 32127869 Query 48700 GGTGAGAGTTTTCACAAAAATCTGCATC 48727 || || |||||||| || ||||||||| Sbjct 32127868 CGTTAGGGTTTTCACGAAGATCTGCATC 32127841 >seq7 Length=27187321 Score = 98.7 bits (108), Expect = 8e-16 Identities = 163/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 || || | |||||| | || | ||| || || |||||| || |||||||| || ||| Sbjct 640344 CCACCTCTCAACCTGAGAACGAGATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCC 640403 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 || || | ||||| ||||| |||||| || | || | | |||||| ||| || Sbjct 640404 AAGGTACGTCCATCCTCGAGCTGTTTACCGGCGAAGATGAGCCTCTGCTGGTCCGGAGGA 640463 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTC-CGT 48678 | || |||||||||| || || ||||| | ||||| |||| || ||| || Sbjct 640464 ATACCTTCCTTGTCCTGGATCTTAGCCTTGACGTTATCGATGGTGTCGG-AG-CTCTCGA 640521 Query 48679 CT-CGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 || ||| || ||||| || ||||||||||||||||| ||||| |||||| Sbjct 640522 CTTCGAGAGTGATGGTCTTGCCGGTGAGAGTTTTCACGAAAATTTGCATC 640571 Score = 93.3 bits (102), Expect = 4e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTC 48576 || || ||||| || ||||||||| || ||||| ||||| || || || | ||||| Sbjct 639450 ACCAAGTGAAGAGTCGACTCCTTTTGGATATTGTAGTCAGC-AAGCGTGCGACCATCCTC 639508 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 |||||||||||| || | || | | ||||||||| || | | |||||||||| Sbjct 639509 AAGCTGCTTACCGGCGAAGATGAGTCTCTGCTGATCTGGTGGGATCCCTTCCTTGTCCTG 639568 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 ||| || ||||| | | || || || | ||| ||| | || |||||||| Sbjct 639569 AATCTTAGCCTTGACATTATCGATTGTGTCTGAGCTCTCAACCTCCAAAGTGATGGTTTT 639628 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 |||||||| || || |||||||||||||| Sbjct 639629 GCCGGTGAGGGTCTTAACAAAAATCTGCAT 639658 >seq3 Length=29132933 Score = 98.7 bits (108), Expect = 8e-16 Identities = 148/208 (71%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 ||||| || |||||| || |||||||| || ||||| ||| | ||||| |||||| Sbjct 16258878 TGAAGCGTAGACTCCTTCTGGATGTTGTAGTCGGCCAAGGTTCGACCATCCTCGAGCTGC 16258937 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| || | || | ||||||||||||| || | | |||||||||| || || Sbjct 16258938 TTTCCGGCGAAGATGAGACGCTGCTGATCCGGAGGGATCCCTTCCTTGTCCTGGATCTT- 16258996 Query 48644 TGCTTGATAGACG-CTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 |||| | | | ||||| |||| ||| ||||| || || || || || || Sbjct 16258997 GGCTTTCACGTTGTCGATGGTGTCGGAGCTTTCCACCTCGAGGGTGATTGTCTTTCCCGT 16259056 Query 48703 GAGAGTTTTCACAAAAATCTGCATCGTG 48730 |||||||||||| || ||||||||| || Sbjct 16259057 GAGAGTTTTCACGAAGATCTGCATCTTG 16259084 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 ||||| |||| | ||||| || ||||| || ||| || || ||||| ||||||||| Sbjct 9517120 CCTCCACGCAGACGCAACACCAAGTGAAGCGTAGACTCTTTCTGGATGTTATAATCAGCC 9517061 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 ||| || ||||||| |||||||| || || | || || | |||||| ||| || Sbjct 9517060 AATGTTCTACCGTCCTCAAGCTGCTTTCCAGCGAATATCAATCTCTGCTGGTCCGGAGGG 9517001 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCG 48677 | || ||||||||| || || ||||| | | || ||||| |||| ||| Sbjct 9517000 ATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCG--ATGGTGTCGGAGCCCTCAA 9516943 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| | || ||||| || ||||| | ||| || ||||| |||||||| Sbjct 9516942 CCTCCAAAGTAATGGTCTTTCCGGTCAAAGTCTTGACAAAGATCTGCAT 9516894 Score = 96.9 bits (106), Expect = 3e-15 Identities = 137/193 (71%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || |||||||| || || | ||| |||||||||||||||| ||| || | Sbjct 11118424 CTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGCCCGTCCTCCAGCTGCTTTCCGGCGAA 11118483 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || | |||||||| ||| || | | |||||||||| || || ||||| | Sbjct 11118484 GATCAGTCGCTGCTGGTCCGGAGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATT 11118543 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | ||||| |||| ||||| ||||| || || || || || || || |||||||| Sbjct 11118544 GTCGATGGTGTCGGAGGACTCGACCTCGAGGGTGATTGTCTTCCCCGTTAGGGTTTTCAC 11118603 Query 48715 AAAAATCTGCATC 48727 || ||||||||| Sbjct 11118604 GAAGATCTGCATC 11118616 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 || || ||||| || |||||| || |||||||| || || || || | ||||| Sbjct 2316331 ACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCTGCTAAGGTGCGACCATCCTCG 2316390 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 |||||||| || || | || | ||||||||||||| || | | |||||||||| | Sbjct 2316391 AGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCCGGAGGGATGCCTTCCTTGTCCTGA 2316450 Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTA 48697 || || ||| | | ||||| || | |||| ||| | ||| ||||| ||| Sbjct 2316451 ATCTTGGCCTTCACGTTGTCAATGGTGTCAGAGCTCTCCACCTCAAGTGTGATGGTCTTA 2316510 Query 48698 CCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| | || ||||||||||||||||| Sbjct 2316511 CCGGTCAAGGTCTTCACAAAAATCTGCAT 2316539 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 || || ||||| || |||||| || |||||||| || || || || | ||||| Sbjct 2323905 ACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCTGCTAAGGTGCGACCATCCTCG 2323964 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 |||||||| || || | || | ||||||||||||| || | | |||||||||| | Sbjct 2323965 AGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCCGGAGGGATGCCTTCCTTGTCCTGA 2324024 Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTA 48697 || || ||| | | ||||| || | |||| ||| | ||| ||||| ||| Sbjct 2324025 ATCTTGGCCTTCACGTTGTCAATGGTGTCAGAGCTCTCCACCTCAAGTGTGATGGTCTTA 2324084 Query 48698 CCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| | || ||||||||||||||||| Sbjct 2324085 CCGGTCAAGGTCTTCACAAAAATCTGCAT 2324113 >seq3342 Length=4839 Score = 96.9 bits (106), Expect = 3e-15 Identities = 137/193 (71%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || |||||||| || || | ||| |||||||||||||||| ||| || | Sbjct 2601 CTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGCCCGTCCTCCAGCTGCTTCCCGGCGAA 2660 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || | |||||||| ||| || | | |||||||||| || || ||||| | Sbjct 2661 GATCAGTCGCTGCTGGTCCGGAGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATT 2720 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | ||||| |||| ||||| ||||| || || || || || || || |||||||| Sbjct 2721 GTCGATGGTGTCGGAGGACTCGACCTCGAGGGTGATTGTCTTCCCCGTTAGGGTTTTCAC 2780 Query 48715 AAAAATCTGCATC 48727 || ||||||||| Sbjct 2781 GAAGATCTGCATC 2793 >seq1946 Length=8506 Score = 95.1 bits (104), Expect = 1e-14 Identities = 137/192 (71%), Gaps = 1/192 (1%) Strand=Plus/Minus Query 48537 CCTTT-TGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAA 48595 ||||| || |||||||| |||||||| || | || || ||||| |||||| || | Sbjct 2159 CCTTTCTGGATGTTGTAGTCAGCCAAAGTGCGGCCATCTTCGAGCTGTTTACCGGCGAAG 2100 Query 48596 ATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGAC 48655 || | ||||||||||||| || | || ||| ||||| || || |||| | Sbjct 2099 ATCAGACGCTGCTGATCCGGAGGGATACCTTCTTTGTCTTGGATCTTGGCTTTGACATTG 2040 Query 48656 GCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACA 48715 | ||||| |||| ||||| ||||| || ||||| || ||||| || |||||||| Sbjct 2039 TCGATGGTGTCGGAGGACTCGACCTCGAGAGTGATGGTCTTGCCGGTTAGGGTTTTCACG 1980 Query 48716 AAAATCTGCATC 48727 || ||||||||| Sbjct 1979 AAGATCTGCATC 1968 >seq6 Length=53636577 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| || ||||| || |||||| || |||||||| || || | | | |||| || Sbjct 30640158 CACCAAGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTCCTCCCGTCTTC 30640099 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 |||||||| ||| || | || | ||||||||| ||| || | | |||||||||| Sbjct 30640098 GAGCTGCTTCCCGGCGAAGATCAGACGCTGCTGGTCCGGTGGGATCCCTTCCTTGTCCTG 30640039 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 ||| || ||||| | | || || |||| || || ||| | ||||| || || Sbjct 30640038 AATCTTGGCCTTGACATTGTCGATCGTGTCGGATGATTCGACCTCTAGGGTTATCGTCTT 30639979 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || || || ||||||||||| |||||||| Sbjct 30639978 CCCCGTTAGGGTTTTCACAAAGATCTGCAT 30639949 >seq4 Length=50002108 Score = 91.5 bits (100), Expect = 1e-13 Identities = 136/192 (71%), Gaps = 1/192 (1%) Strand=Plus/Minus Query 48537 CCTTT-TGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAA 48595 ||||| || |||||||| |||||||| || | || || ||||| |||||| || | Sbjct 24965452 CCTTTCTGGATGTTGTAGTCAGCCAAAGTACGGCCATCTTCGAGCTGTTTACCGGCGAAG 24965393 Query 48596 ATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGAC 48655 || | ||||||||||||| || | || ||| ||||| || || |||| | Sbjct 24965392 ATCAGACGCTGCTGATCCGGAGGGATACCTTCTTTGTCTTGGATCTTGGCTTTGACATTG 24965333 Query 48656 GCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACA 48715 | ||||| |||| ||||| ||||| || ||||| || || || || |||||||| Sbjct 24965332 TCGATGGTGTCGGAGGACTCGACCTCGAGAGTGATGGTCTTGCCCGTTAGGGTTTTCACG 24965273 Query 48716 AAAATCTGCATC 48727 || ||||||||| Sbjct 24965272 AAGATCTGCATC 24965261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421196389426676