Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq5691 125 4e-24 seq2 125 4e-24 seq8 120 2e-22 seq3 118 6e-22 seq1 118 6e-22 seq6 116 2e-21 seq9 113 2e-20 seq395 111 8e-20 seq3260 109 3e-19 seq549 105 3e-18 seq5 104 1e-17 seq7 102 4e-17 seq4 100 1e-16 >seq5691 Length=3222 Score = 125 bits (138), Expect = 4e-24 Identities = 85/95 (89%), Gaps = 1/95 (1%) Strand=Plus/Plus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||||| |||| |||||||| | | |||||||| ||||||||||||||||||||||||| Sbjct 139 AAAAATAAAAT-GGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACG 197 Query 11505 CTCTRACCAACTGAGCTAATGGGCCGTCGACGATT 11539 |||| |||||||||||||||||||| ||| ||||| Sbjct 198 CTCTAACCAACTGAGCTAATGGGCCTTCGCCGATT 232 >seq2 Length=43799612 Score = 125 bits (138), Expect = 4e-24 Identities = 85/95 (89%), Gaps = 1/95 (1%) Strand=Plus/Plus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||||| |||| |||||||| | | |||||||| ||||||||||||||||||||||||| Sbjct 43371296 AAAAATGAAAT-GGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACG 43371354 Query 11505 CTCTRACCAACTGAGCTAATGGGCCGTCGACGATT 11539 |||| |||||||||||||||||||| ||| ||||| Sbjct 43371355 CTCTAACCAACTGAGCTAATGGGCCTTCGTCGATT 43371389 Score = 102 bits (112), Expect = 4e-17 Identities = 77/90 (86%), Gaps = 1/90 (1%) Strand=Plus/Minus Query 11441 AATAAAA-AATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 ||||||| || |||| ||||| || | | |||||||| ||||||||||||||||||| Sbjct 30530348 AATAAAAGAAACAAAATGGCCTATACAGGTTTCGAACCTGTGACCTTCGCGTTATTAGCA 30530289 Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||| ||||||||||||||| |||| Sbjct 30530288 CGACGCTCTAACCAACTGAGCTAATAGGCC 30530259 Score = 98.7 bits (108), Expect = 5e-16 Identities = 68/78 (87%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||| || | ||||||||||| |||||||||||||||||||||||||||| || Sbjct 37692855 AAAGTGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAAC 37692914 Query 11512 CAACTGAGCTAATGGGCC 11529 || |||||||||| |||| Sbjct 37692915 CAGCTGAGCTAATAGGCC 37692932 Score = 89.7 bits (98), Expect = 3e-13 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 || ||||| || | | |||||||| ||||||||||||||||||| |||||||| ||| Sbjct 30530184 AAATGGCCTATACAGGTTTCGAACCTGTGACCTTCGCGTTATTAGCATGACGCTCTAACC 30530125 Query 11513 AACTGAGCTAATGGGCCG 11530 |||||||||||| ||||| Sbjct 30530124 AACTGAGCTAATAGGCCG 30530107 >seq8 Length=29681327 Score = 120 bits (132), Expect = 2e-22 Identities = 79/88 (90%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||||| || |||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 2682632 AAAAAAAAAAGTTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 2682691 Query 11504 GCTCTRACCAACTGAGCTAATGGGCCGT 11531 ||||| |||||||||||||||||||||| Sbjct 2682692 GCTCTAACCAACTGAGCTAATGGGCCGT 2682719 Score = 120 bits (132), Expect = 2e-22 Identities = 79/88 (90%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||||| || |||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 2694582 AAAAAAAAAAGTTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 2694641 Query 11504 GCTCTRACCAACTGAGCTAATGGGCCGT 11531 ||||| |||||||||||||||||||||| Sbjct 2694642 GCTCTAACCAACTGAGCTAATGGGCCGT 2694669 Score = 102 bits (112), Expect = 4e-17 Identities = 77/90 (86%), Gaps = 1/90 (1%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAA-TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 || ||||||| ||| |||||| || | | |||||||| ||||||||||||||||||| Sbjct 10871490 AAAAAAAAATAAAACTTGGCCTATACAGGTTTCGAACCTGTGACCTTCGCGTTATTAGCA 10871549 Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||| ||||||||||||||| |||| Sbjct 10871550 CGACGCTCTAACCAACTGAGCTAATAGGCC 10871579 Score = 98.7 bits (108), Expect = 5e-16 Identities = 68/78 (87%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||||||||| || | | |||||||| |||||||||||||||||||||||||||| || Sbjct 10823793 AAATTGGCCTATACAGGTTTCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAAC 10823852 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 10823853 CAACTGAGCTAATAGGCC 10823870 >seq3 Length=29132933 Score = 118 bits (130), Expect = 6e-22 Identities = 78/86 (91%), Gaps = 1/86 (1%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||||| || |||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 22085303 AAAAAATTAA-TTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 22085245 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||||||||||||||||||| Sbjct 22085244 GCTCTAACCAACTGAGCTAATGGGCC 22085219 Score = 104 bits (114), Expect = 1e-17 Identities = 74/86 (86%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||| | | ||| ||||| || | ||||||||||| ||||||||||||||||||||||| Sbjct 25158418 AAAGAGTAAAAATGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCACGAC 25158477 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| ||||||||||||||| |||| Sbjct 25158478 GCTCTAACCAACTGAGCTAATAGGCC 25158503 Score = 104 bits (114), Expect = 1e-17 Identities = 78/92 (85%), Gaps = 4/92 (4%) Strand=Plus/Plus Query 11442 ATAAAAAA----TCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAG 11497 |||||||| | ||| ||||| || | ||||||||||| ||||||||||||||||| Sbjct 25158562 ATAAAAAAAGGCTAAAAATGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAG 25158621 Query 11498 CACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||| ||||||||||||||| |||| Sbjct 25158622 CACGACGCTCTAACCAACTGAGCTAATAGGCC 25158653 Score = 100 bits (110), Expect = 1e-16 Identities = 69/79 (87%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||| | | ||||||||||| |||||||||||||||||||||||||||| || Sbjct 25158278 AAAATGGCCTGTACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAAC 25158337 Query 11512 CAACTGAGCTAATGGGCCG 11530 ||||||||||||| ||||| Sbjct 25158338 CAACTGAGCTAATAGGCCG 25158356 Score = 98.7 bits (108), Expect = 5e-16 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513 ||||||| || | | ||||||||| |||||||||||||||||||||||||||| |||| Sbjct 25386096 ATTGGCCTATACAGGTATCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACCA 25386155 Query 11514 ACTGAGCTAATGGGCC 11529 ||||||||||| |||| Sbjct 25386156 ACTGAGCTAATAGGCC 25386171 Score = 98.7 bits (108), Expect = 5e-16 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513 ||||||| || | | ||||||||| |||||||||||||||||||||||||||| |||| Sbjct 25387904 ATTGGCCTATACAGGTATCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACCA 25387963 Query 11514 ACTGAGCTAATGGGCC 11529 ||||||||||| |||| Sbjct 25387964 ACTGAGCTAATAGGCC 25387979 Score = 95.1 bits (104), Expect = 6e-15 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||| || | | ||||||||| |||||||||||||||||||||||||||| |||||| Sbjct 25386247 TGGCCTATACAGGAATCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 25386306 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 25386307 TGAGCTAATAGGCC 25386320 Score = 95.1 bits (104), Expect = 6e-15 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||| || | | ||||||||| |||||||||||||||||||||||||||| |||||| Sbjct 25388055 TGGCCTATACAGGAATCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 25388114 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 25388115 TGAGCTAATAGGCC 25388128 Score = 89.7 bits (98), Expect = 3e-13 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513 ||||||| || | | |||||||| |||||||||||||||||||||||||||| |||| Sbjct 25158124 ATTGGCCTATACAGGTTTCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACCA 25158183 Query 11514 ACTGAGCTAATGGGCC 11529 |||||| |||| |||| Sbjct 25158184 ACTGAGATAATAGGCC 25158199 >seq1 Length=26309735 Score = 118 bits (130), Expect = 6e-22 Identities = 83/95 (87%), Gaps = 4/95 (4%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAAT----TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 || |||||| ||||| ||||||||| | | |||||||| ||||||||||||||||| Sbjct 4799305 AAAAAAAAAGCAAATGAATTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTA 4799246 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCCGT 11531 |||||||||||| |||||||||||||||||||||| Sbjct 4799245 GCACGACGCTCTAACCAACTGAGCTAATGGGCCGT 4799211 Score = 118 bits (130), Expect = 6e-22 Identities = 83/95 (87%), Gaps = 4/95 (4%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAAT----TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 || |||||| ||||| ||||||||| | | |||||||| ||||||||||||||||| Sbjct 4799969 AAAAAAAAAGCAAATGAGTTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTA 4799910 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCCGT 11531 |||||||||||| |||||||||||||||||||||| Sbjct 4799909 GCACGACGCTCTAACCAACTGAGCTAATGGGCCGT 4799875 Score = 111 bits (122), Expect = 8e-20 Identities = 77/87 (89%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 11443 TAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 ||||| || || ||||||||| | | |||||||| ||||||||||||||||||||||| Sbjct 2360899 TAAAACATTAA--TGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGA 2360842 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| |||||||||||||||||||| Sbjct 2360841 CGCTCTAACCAACTGAGCTAATGGGCC 2360815 >seq6 Length=53636577 Score = 116 bits (128), Expect = 2e-21 Identities = 72/78 (92%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||||||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 308304 AAATTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 308245 Query 11512 CAACTGAGCTAATGGGCC 11529 |||||||||||||||||| Sbjct 308244 CAACTGAGCTAATGGGCC 308227 Score = 111 bits (122), Expect = 8e-20 Identities = 71/78 (91%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 11908780 AAAATGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 11908721 Query 11512 CAACTGAGCTAATGGGCC 11529 |||||||||||||||||| Sbjct 11908720 CAACTGAGCTAATGGGCC 11908703 Score = 102 bits (112), Expect = 4e-17 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||| ||| | | |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 17892599 TTGGCCTATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 17892540 Query 11515 CTGAGCTAATGGGCC 11529 |||||||||| |||| Sbjct 17892539 CTGAGCTAATAGGCC 17892525 Score = 98.7 bits (108), Expect = 5e-16 Identities = 81/98 (83%), Gaps = 5/98 (5%) Strand=Plus/Plus Query 11437 AATTAA--TAAAAAATCAAA---TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGT 11491 |||||| || ||||| ||| |||||| || | | |||||||| ||||||||||| Sbjct 41628901 AATTAAGATATAAAATAAAAAAGTTGGCCTATACAGGTTTCGAACCTGTGACCTTCGCGT 41628960 Query 11492 TATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||||| ||||||||||||||| |||| Sbjct 41628961 TATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 41628998 Score = 98.7 bits (108), Expect = 5e-16 Identities = 74/88 (84%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 11442 ATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 || ||||| ||||||||| || | | |||||||| ||||||||||||||||||||| Sbjct 41634504 ATCAAAAAAGAAATTGGCCTATACAGGTTTCGAACCTGTGACCTTCGCGTTATTAGCACG 41634563 Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| |||||||||| |||| |||| Sbjct 41634564 ACGCTCTAACCAACTGAGTTAATAGGCC 41634591 Score = 95.1 bits (104), Expect = 6e-15 Identities = 74/88 (84%), Gaps = 2/88 (2%) Strand=Plus/Plus Query 11442 ATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 ||| |||| ||| ||||| || | | |||||||| ||||||||||||||||||||| Sbjct 23121524 ATATAAAA--AAAATGGCCTATACAGGTTTCGAACCTGTGACCTTCGCGTTATTAGCACG 23121581 Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| ||||||||||||||| |||| Sbjct 23121582 ACGCTCTAACCAACTGAGCTAATAGGCC 23121609 >seq9 Length=38354807 Score = 113 bits (124), Expect = 2e-20 Identities = 78/88 (89%), Gaps = 1/88 (1%) Strand=Plus/Minus Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 ||||| ||| ||||||||| | | |||||||| |||||||||||||||||||||||||| Sbjct 37559108 AAAAT-AAACTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGC 37559050 Query 11506 TCTRACCAACTGAGCTAATGGGCCGTCG 11533 ||| |||||||||| ||||||||| ||| Sbjct 37559049 TCTAACCAACTGAGGTAATGGGCCTTCG 37559022 Score = 93.3 bits (102), Expect = 2e-14 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||| || | | |||||||| |||||||||||||||||||||||||||| ||||| Sbjct 25244765 TTGGCCTATACAGGTTTCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 25244706 Query 11515 CTGAGCTAATGGGCC 11529 |||||||||| |||| Sbjct 25244705 CTGAGCTAATAGGCC 25244691 Score = 91.5 bits (100), Expect = 8e-14 Identities = 54/57 (95%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 11471 TCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||| |||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 8591497 TCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGG 8591553 Score = 84.2 bits (92), Expect = 1e-11 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||| || ||||| || | | |||||||| |||||||||||||||||||| ||| Sbjct 2467860 AAAAAGGTAAATGGCCTATACAGGTTTCGAACCTGTGACCTTCGCGTTATTAGCACAACG 2467919 Query 11505 CTCTRACCAACTGAGCTAATGGGCCGTCGACGA 11537 |||| |||||| |||||||| |||| | || || Sbjct 2467920 CTCTAACCAACCGAGCTAATAGGCCTTTGAAGA 2467952 >seq395 Length=45982 Score = 111 bits (122), Expect = 8e-20 Identities = 71/78 (91%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 || |||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 38759 AACTTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 38700 Query 11512 CAACTGAGCTAATGGGCC 11529 |||||||||||||||||| Sbjct 38699 CAACTGAGCTAATGGGCC 38682 >seq3260 Length=4943 Score = 109 bits (120), Expect = 3e-19 Identities = 72/79 (91%), Gaps = 1/79 (1%) Strand=Plus/Minus Query 11452 AAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRA 11510 |||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| | Sbjct 3310 AAATATGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAA 3251 Query 11511 CCAACTGAGCTAATGGGCC 11529 ||||||||||||||||||| Sbjct 3250 CCAACTGAGCTAATGGGCC 3232 >seq549 Length=31576 Score = 105 bits (116), Expect = 3e-18 Identities = 71/80 (89%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 |||||||| ||| | | ||||||| ||||||||||||||||||||||||||||| ||| Sbjct 4775 AATTGGCCTATGCAGGTTCCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACC 4716 Query 11513 AACTGAGCTAATGGGCCGTC 11532 |||||||||||| ||||||| Sbjct 4715 AACTGAGCTAATAGGCCGTC 4696 >seq5 Length=45943323 Score = 104 bits (114), Expect = 1e-17 Identities = 74/86 (86%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||||| | | |||||||| | | |||||||| ||||||||||||||||||||||| Sbjct 37885450 AAAAAACTAGAGTGGCCCATACAGGTTTCGAACCTGTGACCTTCGCGTTATTAGCACGAC 37885509 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||||||||||||||||||| Sbjct 37885510 GCTCTAACCAACTGAGCTAATGGGCC 37885535 Score = 100 bits (110), Expect = 1e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 || |||||||| | | |||||||| |||||||||||||||||||||||||||| ||| Sbjct 37896957 AAGTGGCCCATACAGGTTTCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACC 37896898 Query 11513 AACTGAGCTAATGGGCC 11529 ||||||||||||||||| Sbjct 37896897 AACTGAGCTAATGGGCC 37896881 Score = 91.5 bits (100), Expect = 8e-14 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 || ||||| || | | |||||||| |||||||||||||||||||||||||||| ||| Sbjct 37882468 AAGTGGCCTATACAGGTTTCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACC 37882527 Query 11513 AACTGAGCTAATGGGCC 11529 |||||||||||| |||| Sbjct 37882528 AACTGAGCTAATAGGCC 37882544 Score = 87.8 bits (96), Expect = 9e-13 Identities = 72/87 (83%), Gaps = 1/87 (1%) Strand=Plus/Minus Query 11444 AAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 ||||||| || | ||||| || | |||||||| ||||||||||||||||||| || Sbjct 30489501 AAAAAATAAAGTATGGCCTATACAGATTTCGAACCTGTGACCTTCGCGTTATTAGCATGA 30489442 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| ||||||||||||||| |||| Sbjct 30489441 CGCTCTAACCAACTGAGCTAATAGGCC 30489415 >seq7 Length=27187321 Score = 102 bits (112), Expect = 4e-17 Identities = 77/90 (86%), Gaps = 1/90 (1%) Strand=Plus/Plus Query 11441 AATAAAAAATCA-AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 || ||||||| || ||||| || | ||||||||||| ||||||||||||||||||| Sbjct 4346275 AAGAAAAAATAGGAAATGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCA 4346334 Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||| ||||||||||||||| |||| Sbjct 4346335 CGACGCTCTAACCAACTGAGCTAATAGGCC 4346364 Score = 95.1 bits (104), Expect = 6e-15 Identities = 70/81 (86%), Gaps = 1/81 (1%) Strand=Plus/Minus Query 11452 AAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRA 11510 |||| ||||| || | | |||||||| |||||||||||||||||||||||||||| | Sbjct 13086652 AAATGTGGCCTATACAGGTTTCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAA 13086593 Query 11511 CCAACTGAGCTAATGGGCCGT 11531 |||||||||||||| |||||| Sbjct 13086592 CCAACTGAGCTAATAGGCCGT 13086572 Score = 91.5 bits (100), Expect = 8e-14 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 11471 TCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||||||||||||||||||||||||||| ||||||||||||||| |||| Sbjct 4346461 TCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 4346519 >seq4 Length=50002108 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||| || | ||||||||||| |||||||||||||||||||||||||||| |||||| Sbjct 31356483 TGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 31356424 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 31356423 TGAGCTAATAGGCC 31356410 Score = 100 bits (110), Expect = 1e-16 Identities = 74/86 (86%), Gaps = 2/86 (2%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||||| | | ||||| || | ||||||||||| ||||||||||||||||||||||| Sbjct 31362211 AAAAAAACGA--TGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCACGAC 31362154 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| ||||||||||||||| |||| Sbjct 31362153 GCTCTAACCAACTGAGCTAATAGGCC 31362128 Score = 100 bits (110), Expect = 1e-16 Identities = 74/86 (86%), Gaps = 2/86 (2%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||||| | | ||||| || | ||||||||||| ||||||||||||||||||||||| Sbjct 31374772 AAAAAAACGA--TGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCACGAC 31374715 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| ||||||||||||||| |||| Sbjct 31374714 GCTCTAACCAACTGAGCTAATAGGCC 31374689 Score = 98.7 bits (108), Expect = 5e-16 Identities = 68/78 (87%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||| || | ||||||||||| |||||||||||||||||||||||||||| || Sbjct 4319716 AAAGTGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAAC 4319657 Query 11512 CAACTGAGCTAATGGGCC 11529 || |||||||||| |||| Sbjct 4319656 CAGCTGAGCTAATAGGCC 4319639 Score = 98.7 bits (108), Expect = 5e-16 Identities = 83/101 (82%), Gaps = 5/101 (5%) Strand=Plus/Plus Query 11429 AAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCG 11488 ||| ||| |||||| |||||| ||||| || | ||||||||||| |||||||| Sbjct 31207014 AAAAATA-AATTAAACAAAAATA----TGGCCTATACAGGGATCGAACCTGTGACCTTCG 31207068 Query 11489 CGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||||| | ||||||||||||| |||| Sbjct 31207069 CGTTATTAGCACGACGCTCTAAACAACTGAGCTAATAGGCC 31207109 Score = 95.1 bits (104), Expect = 6e-15 Identities = 73/87 (84%), Gaps = 4/87 (5%) Strand=Plus/Plus Query 11443 TAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 ||||||||| ||||| || | | |||||||| |||||||||||||||||||||| Sbjct 28269908 TAAAAAATC----TGGCCTATACAGGTTTCGAACCTGTGACCTTCGCGTTATTAGCACGA 28269963 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| ||||||||||||||| |||| Sbjct 28269964 CGCTCTAACCAACTGAGCTAATAGGCC 28269990 Score = 93.3 bits (102), Expect = 2e-14 Identities = 86/107 (80%), Gaps = 6/107 (6%) Strand=Plus/Plus Query 11428 GAAATATAGAATTAATAAAAAA----TCAAAT-TGGCCCATGAAAGGATCGAACCTTCGA 11482 |||||| | ||||| ||||| | |||| ||||| || | | |||||||| || Sbjct 28254145 GAAATAGA-AATTATCTAAAAAGTTTTAAAATCTGGCCTATACAGGTTTCGAACCTGTGA 28254203 Query 11483 CCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||||||||||| ||||||||||||||| |||| Sbjct 28254204 CCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 28254250 Score = 91.5 bits (100), Expect = 8e-14 Identities = 68/79 (86%), Gaps = 1/79 (1%) Strand=Plus/Plus Query 11452 AAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRA 11510 |||| ||||| || | | |||||||| |||||||||||||||||||||||||||| | Sbjct 28225831 AAATATGGCCTATACAGGTTTCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAA 28225890 Query 11511 CCAACTGAGCTAATGGGCC 11529 |||||||||||||| |||| Sbjct 28225891 CCAACTGAGCTAATAGGCC 28225909 Score = 82.4 bits (90), Expect = 4e-11 Identities = 53/59 (90%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 11471 TCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 || ||||| |||||||| ||||||||||||||||||| ||||||||||||||| |||| Sbjct 28248356 TCAAACCTGTGACCTTCGGGTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 28248414 Lambda K H 0.638 0.409 0.919 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261457176399376