Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= NC_006820.1 Length=196280 Score E Sequences producing significant alignments: (Bits) Value seq10676 623 1e-173 seq3905 233 2e-56 seq3 172 7e-38 seq3442 100 4e-16 seq68 96.9 4e-15 seq2 93.3 5e-14 >seq10676 Length=153368 Score = 623 bits (690), Expect = 1e-173 Identities = 715/957 (75%), Gaps = 6/957 (1%) Strand=Plus/Minus Query 135374 TTCTGCGAGTGGGTTACCAGCACCGACAACCGCCTCTATGTGGGTTGGTTTGGAACGCTG 135433 ||||| | ||| | || || || || ||||| || || | || |||||||| || Sbjct 1326 TTCTGTAACTGGATAACTAGTACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1267 Query 135434 ATGATTCCTACTCTTCTCG-CAGCTGCTATCTGCTTTATTGTTGCTTTCATCGCTGCACC 135492 ||||||||||| ||| | | | || || | |||||| | || ||||| ||||| || Sbjct 1266 ATGATTCCTAC-CTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCC 1208 Query 135493 TCCCGTCGATATTGACGGCATCCGCGAACCTGTTGCTGGTTCTCTAATGTACGGAAATAA 135552 ||| || |||||||| || || || ||||||||| |||| ||||| | |||||||| || Sbjct 1207 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAA 1148 Query 135553 CATCATCTCTGGTGCTGTTATCCCTTCTA--GCAACGCCATCGGCCTTCACTTCTATCCC 135610 || || || ||||| |||| ||| || ||| || || || | || || ||||| Sbjct 1147 TATTATTTCAGGTGCCATTATTCCTACTTCTGCA--GCTATTGGTTTGCATTTTTATCCG 1090 Query 135611 ATCTGGGAAGCTGCTTCTCTTGATGAGTGGCTATATAATGGTGGTCCTTATCAACTAGTG 135670 |||||||||||||| || ||||||| |||||||| || |||||||||||| ||||| | Sbjct 1089 ATCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGTGGTCCTTATGAACTAATT 1030 Query 135671 GTCTTCCACTTCCTTATCGGTGTCTTCTCTTACATGGGTCGCGAGTGGGAACTCTCTTAC 135730 || | ||||| | | ||||| | ||| |||||||| ||||||||||| || | Sbjct 1029 GTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTC 970 Query 135731 CGACTGGGTATGCGCCCTTGGATTTGTGTCGCTTACTCAGCCCCTGTTGCCGCTGCTACT 135790 || ||||||||||| ||||||||| ||| || || ||||| |||||||| ||||||||| Sbjct 969 CGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACT 910 Query 135791 GCTGTTTTCCTGGTCTACCCCTTTGGACAAGGTTCTTTCAGTGATGGTATGCCGCTTGGC 135850 ||||||||| || ||||||| |||| ||||| ||| |||||||||||| || || Sbjct 909 GCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGA 850 Query 135851 ATTTCTGGAACTTTTAACTACATGCTTGTTTTCCAGGCAGAACACAACATTCTCATGCAT 135910 || ||||| ||||| |||| ||| |||| |||||||| || ||||||||||| ||||| Sbjct 849 ATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCAC 790 Query 135911 CCTTTCCACATGTTGGGAGTTGCTGGGGTCTTCGGTGGTTCTCTGTTCTCTGCTATGCAT 135970 || || |||||||| || || ||||| || ||||| || || || || |||||||||| Sbjct 789 CCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCAT 730 Query 135971 GGATCTCTTGTCACCTCTAGTCTTGTACGTGAGACGACTGAGGTAGAATCCCAGAACTAT 136030 || ||| | || || |||||| | | | || || || || ||||| || | Sbjct 729 GGTTCTTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAA 670 Query 136031 GGTTACAAGTTCGGTCAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGTTACTTC 136090 || |||| ||||||||||||||||| |||||||||||||| |||||||| ||||| || Sbjct 669 GGGTACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTT 610 Query 136091 GGTCGTCTGATCTTCCAATATGCGTCGTTCAACAACTCTCGTTCGCTACACTTTTTCCTT 136150 || || |||||||||||||||| |||||||| |||||||| |||| || ||| | Sbjct 609 GGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTA 550 Query 136151 GCTGCTTGGCCTGTTGTCGGTATCTGGTTTGCTGCCCTGGGCGTATCTACGATGGCGTTC 136210 || |||||||| || || ||||| |||||| |||| | || | ||| ||||| ||| Sbjct 549 GCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTC 490 Query 136211 AACCTCAATGGATTCAACTTCAACCAGTCCATTGTATCTTCTGAAGGTCGTGTACTCAAC 136270 ||||| ||||| ||||| |||||||| || | || | | |||| ||||| | || Sbjct 489 AACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAAT 430 Query 136271 ACCTGGGCAGATGTGCTGAATCGTGCTGGTCTGGGTATGGAGGTGATGCACGAGCGT 136327 || ||||| ||| | | || |||||| || |||||||| || ||||| || ||| Sbjct 429 ACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGT 373 Score = 574 bits (636), Expect = 6e-159 Identities = 739/1012 (73%), Gaps = 18/1012 (2%) Strand=Plus/Plus Query 137875 TGGATGACTGGATTAAACGAGATCGCTTTGTATTTGTGGGTTGGTCTGGACTACTACTTT 137934 ||||||||||| | | || ||||| || ||||| ||||||||||| ||| | || | Sbjct 31990 TGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCT 32049 Query 137935 TTCCCACTGCTTATTTGGCCCTTGGTGGCTGGCTTACTGGCACAACGTTTGTTACAAGCT 137994 |||| ||| ||||| || | || || ||| | || || ||||| ||||| || | Sbjct 32050 TTCCTTGTGCCTATTTCGCTTTGGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCAT 32109 Query 137995 GGTACACCCACGGGTTGGCGTCTAGTT---ATCTTGAAGGCGCTAATTTCCTCACAGCAG 138051 |||| || || || ||||| ||||| || | ||||| ||||| | || || | Sbjct 32110 GGTATACTCATGGATTGGC---TAGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTG 32166 Query 138052 CTGTTTCGACTCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGT 138111 | ||||| ||||||||| || | | | |||||| | | |||| ||||||||||| Sbjct 32167 CAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGGGGTCCTGAAG 32226 Query 138112 CTCAAGGAGATATCGTCCGCTGGTTCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCC 138171 | ||||||||| | || |||| ||| | || || || ||| ||||||| || |||| Sbjct 32227 CACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTGTTGCTCTCC 32286 Query 138172 ACGGGGCCTTTAGTCTGATTGGATTCATGCTTCGCCAGTTTGAGATCTCTCG-TCTGGTA 138230 |||| || || | || || || ||| | || || ||||| | |||| |||| | Sbjct 32287 ACGGTGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGATCTGTT- 32345 Query 138231 GGCA--TCCGTCCCTACAACGCAATCGCATTCTCTGGTCCCATCGCTGTGTTCGTCAGCG 138288 || | || || || || |||||||||||||||||||| || ||||| || || | Sbjct 32346 --CAATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTG 32403 Query 138289 TGTTCCTGATGTATCCTTTGGGTCAATCCAGTTGGTTCTTTGCTCCCTCCTTTGGTGTGG 138348 | || || || ||||| | |||||||| ||||||||||||| || |||||||| | Sbjct 32404 TCTTTCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAG 32463 Query 138349 CAGCAATCTTCCGAT---TCCTGTTGTTCCTTCAGGGTTTCCATAACTGGACCCTCAACC 138405 | || || || |||| |||| || |||| ||||||| ||||| ||||| | |||| Sbjct 32464 CGGCTATATTTCGATTCATCCTCTTTTTCC--AAGGGTTT-CATAATTGGACATTGAACC 32520 Query 138406 CCTTTCATATGATGGGCGTAGCAGGTATTCTTGGTGGTGCTCTGCTCTGTGCTATTCATG 138465 | |||||||||||||| || || ||| | || || | |||||| | || |||||||||| Sbjct 32521 CATTTCATATGATGGGAGTCGCTGGTGTACTGGGCGCGGCTCTGTTATGCGCTATTCATG 32580 Query 138466 GTGCTACAGTAGAAAATACTTTGTATGAAGATGGCGAACAATCAAATACTTTTAAAGCAT 138525 ||||||| |||||||||||||| | ||||||||| || ||||||| || || | Sbjct 32581 GTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTT 32640 Query 138526 TTGAACCTACTCAAGAAGAAGAAACCTATTCAATGGTTACTGCTAACCGTTACTGGTCGC 138585 || | || ||||||| |||||||| ||||||||||| || |||||||| | ||||| | Sbjct 32641 TTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCAC 32700 Query 138586 AAATCTTTGGAATTGCTTTTAGTAATAAGCGTTGGCTTCACTTCTTTATGCTCTTTGTTC 138645 |||||||||| |||||||| ||||| |||||| | || ||||||||| | ||||| | Sbjct 32701 AAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTAC 32760 Query 138646 CCGTCATGGGTCTCTGGACTAGTAGTATTGGTATTATTGGTCTTGCTCTTAACCTACGAG 138705 | || | ||| | |||| ||| | |||| | | ||||| ||| | |||||||| | Sbjct 32761 CAGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCTTTGAACCTACGTG 32820 Query 138706 CGTATGATTTCGTATCGCAAGAAATTCGTGCAGCAGAAGATCCTGAATTCGAGACCTTCT 138765 | ||||| ||||| || || ||||| |||||||| |||||||| ||||| ||||| |||| Sbjct 32821 CCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTTCT 32880 Query 138766 ACACCAAGAACATTCTTCTGAATGAAGGTCTGCGTGCCTGGATGGCTCCTGTGGATCAAC 138825 | || || || |||||| | || |||||| | || || |||||||| || ||||| | Sbjct 32881 ATACTAAAAATATTCTTTTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGATCAGC 32940 Query 138826 CTCACGAAAACTTTGTTTTTCCTGAAGAAGTATTGCCAAGAGGCAACGCTCT 138877 |||| |||||| || | || ||||| || || | ||| | || |||||||| Sbjct 32941 CTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 32992 >seq3905 Length=4339 Score = 233 bits (258), Expect = 2e-56 Identities = 309/420 (74%), Gaps = 14/420 (3%) Strand=Plus/Plus Query 138150 CTCTGGACTTTTGTGGCGCTCCACGGGGCCTTTAGTCTGATTGGATTCATGCTTCGCCAG 138209 || ||| ||||||| || |||||||| || || | || || || ||| | || || Sbjct 1156 CTGTGGGCTTTTGTTGCTCTCCACGGTGCTTTCGCATTAATAGGTTTTATGTTACGTCAA 1215 Query 138210 TTTGAGATCTCTCG-TCTGGTAGGCA--TCCGTCCCTACAACGCAATCGCATTCTCTGGT 138266 ||||| | |||| |||| | || | || || || || ||||||||||||| |||| Sbjct 1216 TTTGAACTTGCTCGATCTGTT---CAATTGCGACCTTATAATGCAATCGCATTCTTTGGT 1272 Query 138267 CCCATCGCTGTGTTCGTCAGCGTGTTCCTGATGTATCCTTTGGGTCAATCCAGTTGGTTC 138326 || || ||||| || || || || || || ||||| | |||||||| |||||||| Sbjct 1273 CCAATTGCTGTTTTTGTTTCTGTCTTTCTAATTTATCCACTAGGTCAATCTGGTTGGTTC 1332 Query 138327 TTTGCTCCCTCCTTTGGTGTGGCAGCAATCTTCCGAT---TCCTGTTGTTCCTTCAGGGT 138383 ||||| || |||||||| || | || || |||| |||| || |||| ||||| Sbjct 1333 TTTGCGCCTAGTTTTGGTGTAGCGGTTATATTTCGATTCATCCTCTTTTTCC--AAGGGT 1390 Query 138384 TTCCATAACTGGACCCTCAACCCCTTTCATATGATGGGCGTAGCAGGTATTCTTGGTGGT 138443 || ||||| |||| | ||||| |||||||||||||| || || ||| | || || | Sbjct 1391 TT-CATAATTGGATATTGAACCCATTTCATATGATGGGAGTCGCTGGTGTACTGGGCGCG 1449 Query 138444 GCTCTGCTCTGTGCTATTCATGGTGCTACAGTAGAAAATACTTTGTATGAAGATGGCGAA 138503 |||||| | || ||||||||||||||||| |||||||||||||| | ||||||||| || Sbjct 1450 GCTCTGTTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGAT 1509 Query 138504 CAATCAAATACTTTTAAAGCATTTGAACCT-ACTCAAGAAGAAGAAACCTATTCAATGGT 138562 ||||||| || || ||| ||||| ||||||| |||||||| ||||||||||| Sbjct 1510 GGTGCAAATACATTCCGTGC-TTTTAACCTAACTCAAGCCGAAGAAACTTATTCAATGGT 1568 >seq3 Length=29132933 Score = 172 bits (190), Expect = 7e-38 Identities = 362/533 (68%), Gaps = 14/533 (3%) Strand=Plus/Plus Query 137895 GATCGCTTTGTATTTGTGGGTTGGTCTGGACTACTACTTTTTCCCACTGCTTATTTGGCC 137954 || |||||||| ||||| ||||||||||| ||| | || ||||| ||| ||||| | Sbjct 2931774 GACCGCTTTGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTTCCTTGTGCCTATTTCTCT 2931833 Query 137955 CTTGGTGGCTGGCTTACTGGCACAACGTTTGTTACAAGCTGGTACACCCACGGGTTGGCG 138014 | || || ||| | || || ||||| ||||| || ||||| || || || |||| Sbjct 2931834 TTGGGGGGTTGGTTCACAGGTACAACTTTTGTAACTTCATGGTATACTCATGGATTGG-- 2931891 Query 138015 TCTAGT---TATCTTGAAGGCGCTAATTTCCTCACAGCAGCTGTTTCGACTCCTGCTGAT 138071 ||||| ||| | ||||| | | | | || | || ||||| ||||||||| || Sbjct 2931892 -CTAGTTCCTATTTAGAAGGTTGCAGTCTTTTAACCGATGCAGTTTCTACTCCTGCTAAT 2931950 Query 138072 GCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAAGGAGATATCGTCCGC 138131 | | |||||| || || | || ||||||||| | ||||||||| | || Sbjct 2931951 AGTTTAACGCATTCT-TTGTTATTATTGTGGGTCCTGAAGCACAAGGAGATTTTAGTCGT 2932009 Query 138132 TGGTTCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCCACGGGGCCTTTAGTCTGATT 138191 |||| ||| | | || || ||| |||||| || |||||| | || || | || Sbjct 2932010 TGGTGTCAATTAGACGGTCTGTGGGGTTTTGTTGCTCTCCACAGTGCTTTCGAATTAATA 2932069 Query 138192 GGATTCATGCTTCGCCAGTTTGAGATCTCTCG-TCTGGTAGGCA--TCCGTCCCTACAAC 138248 | || ||| | || || ||||| | |||| |||| | || | || || || || Sbjct 2932070 AGTTTTATGTTACGTCAATTTGAACTTGCTCGATCTGTT---CAATTGCGACCTTATAAT 2932126 Query 138249 GCAATCGCATTCTCTGGTCCCATCGCTGTGTTCGTCAGCGTGTTCCTGATGTATCCTTTG 138308 ||||| ||||||||||||| || ||||| || | || || || || ||||| | Sbjct 2932127 GCAATAACATTCTCTGGTCCAATTGCTGTTTTTATTTCTGTCTTTCTAATTTATCC-TCA 2932185 Query 138309 GGTCAATCCAGTTGGTTCTTTGCTCCCTCCTTTGGTGTGGCAGCAATCTTCCGATTCCTG 138368 |||||||| ||||||||||||| || |||||||| || || || || || ||| | Sbjct 2932186 GGTCAATCTGGTTGGTTCTTTGCACCTAGTTTTGGTGTAGCGGCTATATTTCGGTTCATC 2932245 Query 138369 TTGTTCCTTCAGGGTTTCCATAACTGGACCCTCAACCCCTTTCATATGATGGG 138421 | || | || || || ||||| |||| | ||||| ||||||||||||| Sbjct 2932246 ATCTTTTTCCAAGGGTTTCATAATTGGAAATTGAACCCTCTTCATATGATGGG 2932298 >seq3442 Length=4740 Score = 100 bits (110), Expect = 4e-16 Identities = 76/90 (84%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 136044 GTCAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGTTACTTCGGTCGTCTGATCT 136103 |||||||| |||| |||||||||||||| |||||||| ||||| || || || |||||| Sbjct 4277 GTCAAGAAAAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGGCCGATTGATCT 4336 Query 136104 TCCAATATGCGTCGTTCAACAACTCTCGTT 136133 |||||||||| |||||||| ||||||| Sbjct 4337 TCCAATATGCTAGTTTCAACAATTCTCGTT 4366 >seq68 Length=187690 Score = 96.9 bits (106), Expect = 4e-15 Identities = 94/120 (78%), Gaps = 1/120 (1%) Strand=Plus/Plus Query 135725 TCTTACCGACTGGGTATGCGCCCTTGGATTTGTGTCGCTTACTCAGCCCCTGTTGCCG-C 135783 |||| ||| ||||||||||| | ||||||| ||| || | ||||| |||||||| | | Sbjct 91317 TCTTTCCGTCTGGGTATGCGTCTTTGGATTGTTGTTGCAGATTCAGCTCCTGTTGCAGCC 91376 Query 135784 TGCTACTGCTGTTTTCCTGGTCTACCCCTTTGGACAAGGTTCTTTCAGTGATGGTATGCC 135843 |||||||||||||||| || ||||||| |||| | || ||| |||||||||||| Sbjct 91377 TGCTACTGCTGTTTTCTTGATCTACCCAATTGGTGATGGAAGTTTTTCTGATGGTATGCC 91436 >seq2 Length=43799612 Score = 93.3 bits (102), Expect = 5e-14 Identities = 134/186 (72%), Gaps = 6/186 (3%) Strand=Plus/Plus Query 135467 TTTATTGTTGCTTTCATCGCTGCACCTCCCGTCGATATTGACGGCATCCGCGAACCTGTT 135526 |||||| | || ||||| |||| ||||| || ||| |||| || || | |||||| || Sbjct 8463606 TTTATTATCGCATTCATTGCTGTTCCTCCAGTAGATTTTGATGGTATTTGTGAACCTATT 8463665 Query 135527 GCTGGTTCTCTAATGTACGGAAATAACATCATCTCTGGTGCTGTTATCC---CTTCTAGC 135583 || | ||||| | || ||||| | || || || ||||| |||| | ||||| || Sbjct 8463666 TCTCGATCTCTTCTTTATGGAAACGATATTATTTCAGGTGCCATTATTCATACTTCT-GC 8463724 Query 135584 AACGCCATCGGCCTTCACTTCTATCCCATCTGGGAAGCTGCTTCTCTTGATGAGTGGCTA 135643 | || || || | || || ||| | | |||||||||||| | | ||||||| |||||| Sbjct 8463725 A--GCTATTGGTTTGCATTTTTATTCAAACTGGGAAGCTGCATTTGTTGATGAATGGCTA 8463782 Query 135644 TATAAT 135649 || ||| Sbjct 8463783 TACAAT 8463788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627884197670400