Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq4 167 3e-36 seq8 104 3e-17 seq6 89.7 6e-13 >seq4 Length=50002108 Score = 167 bits (184), Expect = 3e-36 Identities = 407/606 (67%), Gaps = 8/606 (1%) Strand=Plus/Minus Query 33298 ATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAAC 33357 |||| || |||||||||||||| || ||||||||||| || || |||||||| || Sbjct 15359141 ATCAGGCAGGCGAAATCGCAGTGAAGCCCCTCGTCTCTCGAGATCAGCTCGTTGGAGAAG 15359082 Query 33358 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAA 33417 || || || ||||| || |||||||| || ||||| || || || ||| ||| || Sbjct 15359081 GTCAGACCAGGCATGAGCCCACGCTTCTTGAGCCAGAAGATCGAGCAGAAGCTTCCGGAG 15359022 Query 33418 AAGAAGATTCCTTCTACTGCA-GCAAAGGCAATAAGTCTCT-CTCCATAACCGGCGCTGT 33475 |||||||| ||||| || ||| || ||||| | | |||| | | | | | | | | Sbjct 15359021 AAGAAGATCCCTTCCAC-GCAGGCGAAGGCGACGATCCTCTCCGCGAAAGTCTGAGAT-C 15358964 Query 33476 CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGG 33535 | | |||||||| ||||| | ||||||||| || || || || || || |||| Sbjct 15358963 CGTCGATCCACTTCATGGCCCATTGGGCCTTCTTCGCGACGCAGGGGATGGTCTCGATGG 15358904 Query 33536 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTAT 33595 | ||||||| || | || || |||| || | || || |||| || || |||| Sbjct 15358903 CCCGGAAGAGATGGTCCCTCTCCTTGTTATCCTTGATGTAGGTGTCGAGCAGGAGGCTAT 15358844 Query 33596 ACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGG 33655 |||| || || || ||||| ||||| || ||||| || |||||||| | ||||||| Sbjct 15358843 ACATCTCTGAGTGGATGTTCTCAATCGCGATCTGGAAGCCGTAGAAGGCACGCGCCTCGG 15358784 Query 33656 TAATCTGTACTTCTGTACA-AAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTG 33714 | ||| || || | ||| || || || | || || || |||||||| | Sbjct 15358783 AGACCTGGACGTC-GGACATGAACCGGGAGGCGAGGTTCTCCAGGACGATTCCGTCGGAG 15358725 Query 33715 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTATT 33773 || || || || || | || ||||| || || | || || | ||| || || | Sbjct 15358724 GCGGCGAAGAAGGCTAGGACGTGTTTGATGAAGTGGCGCTC-TCCGTCGTTGAGATTCTC 15358666 Query 33774 CCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGC 33833 ||| || | ||| || | ||| ||||| || | ||||| || || || || || Sbjct 15358665 CCAGTCGCGTGTGTCTCCGGAGAGATCGACTTCCTCGGCGGTCCAGAAGGAGGCTTCGGC 15358606 Query 33834 CTTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTATTTGG 33893 ||| || ||||| | |||||| | |||||||||||||| || ||||| | ||| Sbjct 15358605 CTTCTTGTACATCTCCCAGATCTGTGGGTATTGGATTGGGAACATGCAGAATCTGTCTGG 15358546 Query 33894 ATTTGG 33899 |||| Sbjct 15358545 GGTTGG 15358540 >seq8 Length=29681327 Score = 104 bits (114), Expect = 3e-17 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 63371 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63430 |||||| || || | ||| | ||| |||| ||| | || | || |||||||| |||||| Sbjct 8204240 TCCTCCTTGGTCAACGTAGCGAGCAGTGTCATTGAATACCCGCAGCATTGGAACAATACC 8204181 Query 63431 GTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63490 || ||| | ||||| || || || |||||||| | ||||| || || || || Sbjct 8204180 ATTCGATGTTCCATTTGTGCCACGAATGTAGCTTCCTGTTGCACGGATGTTGTGAACAGA 8204121 Query 63491 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63550 | |||||||||||| || |||| || | ||| || ||| || || ||||| || Sbjct 8204120 AACACCTATTCCCCCAGCTGATTTACTAATAACTGCACACTCTTTCAATGTTTCATATAT 8204061 Query 63551 ACCCTCTATGCTATCATCGATCATG 63575 ||||| ||||||||||| ||||| Sbjct 8204060 TCCCTCAATGCTATCATCCTTCATG 8204036 >seq6 Length=53636577 Score = 89.7 bits (98), Expect = 6e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 63371 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63430 |||||| || || | || | ||| || | ||| |||| | || |||||||| |||||| Sbjct 23786774 TCCTCCTTGGTCGACATAACGAGCAGTATCATTGAAAACCCGCAGCATTGGAACAATACC 23786715 Query 63431 GTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63490 || ||| ||||| || || ||| || |||||| ||||| || || || ||| Sbjct 23786714 ATTAGATTCTCCATTAGTGCCACGGATGTAACTTCCAGAAGCACGGATGTTGTGAACTGA 23786655 Query 63491 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63550 | |||||| ||||| || |||| || | || || ||| || || ||||| || Sbjct 23786654 AACACCTATACCCCCAGCTGATTTACTAATAACCGCACACTCTTTCAATGTATCATATAT 23786595 Query 63551 ACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCT 63592 || || ||||||||||| ||||| | ||||| ||||| Sbjct 23786594 TCCTTCAATGCTATCATCCTTCATGCAGATCAGAAAGCAGCT 23786553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622864067696160