Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq3 104 2e-17 seq7 100 3e-16 seq5 98.7 1e-15 seq4 96.9 3e-15 seq6 93.3 4e-14 seq1946 89.7 5e-13 seq3342 86.0 6e-12 >seq3 Length=29132933 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || || || | || ||||| | |||||| |||| | ||| | Sbjct 9516666 ATGCAGATCTTCGTTAAGACTCTCACGGGAAAGACCATCACCCTCGAGGTGGAAAGCTCC 9516725 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | |||||| ||||| ||||| ||||| || ||||| ||||| Sbjct 9516726 GACACCATCGACAACGTCAAAGCCAAGATCCAGGACAAGGAAGGTATCCCTCCGGATCAG 9516785 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || || ||||| | || |||||| || |||||||| | |||| | |||||| ||| Sbjct 9516786 CAGAGGCTCATCTTCGCCGGCAAGCAGCTCGAAGACGGCAGAACATTGGCCGACTACAAC 9516845 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || || || || ||||| | ||||| || || || ||| | || || Sbjct 9516846 ATCCAGAAGGAGTCTACGCTTCATCTCGTTCTCAGGCTTCGTGGTGG 9516892 Score = 102 bits (112), Expect = 8e-17 Identities = 163/234 (70%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 26762 AAACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGA 26821 || ||| ||||| | || || ||||| | || ||||| | |||||| |||| | || Sbjct 16259087 AACCAAGATGCAGATCTTCGTGAAAACTCTCACGGGAAAGACAATCACCCTCGAGGTGGA 16259028 Query 26822 ATCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCC 26881 | |||||||||||| | || ||| ||||| ||||| |||||||| ||||| Sbjct 16259027 AAGCTCCGACACCATCGACAACGTGAAAGCCAAGATCCAGGACAAGGAAGGGATCCCTCC 16258968 Query 26882 CGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGA 26941 ||||| || | ||||| | || ||| || || ||||| |||| | ||| | | ||| Sbjct 16258967 GGATCAGCAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAGGATGGTCGAACCTTGGCCGA 16258908 Query 26942 CTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||| ||||| || || || ||||| | || || ||| || | || | ||||| Sbjct 16258907 CTACAACATCCAGAAGGAGTCTACGCTTCACCTTGTCTTGCGTCTACGTGGAGG 16258854 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 || ||||| | || || ||||| |||| || || | |||||| |||| | || || Sbjct 11118618 AAGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACAATCACCCTCGAGGTCGAGTCC 11118559 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 |||||||||||| | ||||| ||||| ||||| ||||| || ||||| || Sbjct 11118558 TCCGACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCTCCGGAC 11118499 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 || || |||| || | || ||| || || || || || | | | | || |||||| Sbjct 11118498 CAGCAGCGACTGATCTTCGCCGGAAAGCAGCTGGAGGACGGGCGCACCCTCGCCGACTAC 11118439 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||| || || || |||||| |||| || ||||| Sbjct 11118438 AACATCCAGAAGGAGTCTACTCTCCACCTCGTCCT 11118404 >seq7 Length=27187321 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 || ||||| | || || ||||| |||| || || |||||||| |||| | |||||| Sbjct 17980154 AAGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATCACCCTCGAGGTCGAATCA 17980095 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 |||||||||||| | |||||| ||||| ||||| ||||| || || || || Sbjct 17980094 TCCGACACCATCGACAATGTCAAAGCCAAGATCCAGGACAAGGAAGGAATCCCACCGGAC 17980035 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 || || |||| || | || ||| ||||| || ||||| | | | || |||||| Sbjct 17980034 CAGCAGCGACTGATCTTCGCCGGGAAACAGCTGGAAGACGGCCGCACACTCGCCGACTAC 17979975 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||| || || || || || | ||||| ||||| Sbjct 17979974 AACATCCAGAAGGAGTCGACGCTTCATCTCGTCCT 17979940 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || || ||||| | || || || | ||||| ||||| | || | Sbjct 640570 ATGCAAATTTTCGTGAAAACTCTCACCGGCAAGACCATCACTCTCGAAGTCGAGAGCTCC 640511 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | ||||| ||||| ||||| ||||| || ||||| || || Sbjct 640510 GACACCATCGATAACGTCAAGGCTAAGATCCAGGACAAGGAAGGTATTCCTCCGGACCAG 640451 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || || ||||| | || ||| ||||| ||||| |||| | | | | |||||| ||| Sbjct 640450 CAGAGGCTCATCTTCGCCGGTAAACAGCTCGAGGATGGACGTACCTTGGCCGACTACAAC 640391 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || || || || || ||| ||||||| || || || | ||||| || Sbjct 640390 ATCCAGAAGGAGTCGACTCTCCATCTCGTTCTCAGGTTGAGAGGTGG 640344 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 || ||||| | || || ||||| |||| || || | |||||| |||| | |||||| Sbjct 18014280 AAGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACAATCACCCTCGAGGTCGAATCA 18014221 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 |||||||||||| | ||||| ||||| ||||| || || || || || || Sbjct 18014220 TCCGACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCACCGGAC 18014161 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 || || |||| || | || ||| ||||| || ||||| | | | | || |||||| Sbjct 18014160 CAGCAGCGACTGATCTTCGCCGGGAAACAGCTGGAAGACGGCCGCACCCTCGCCGACTAC 18014101 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||| || || || || || | ||||| ||||| Sbjct 18014100 AACATCCAGAAGGAGTCGACGCTTCATCTCGTCCT 18014066 >seq5 Length=45943323 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 26862 GACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAA 26921 ||||| || || ||||| || |||||||| || || || | || ||||||||||| ||| Sbjct 20718260 GACAAGGAGGGAATACCACCGGATCAACAGAGGCTGATATTCGCTGGCAAACAACTTGAA 20718201 Query 26922 GATGATAGAAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTG 26981 |||| ||||| | | ||||| ||||| || ||||| || ||| | || ||||| || Sbjct 20718200 GATGGTAGAACCCTTGCGGACTACAACATCCAGAAAGAGTCAACTCTTCACTTGGTCTTG 20718141 Query 26982 AGACTTAGAGGAGG 26995 || |||||||| || Sbjct 20718140 AGGCTTAGAGGTGG 20718127 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 || ||||| | || || ||||| |||| || || |||| ||| |||| | || || Sbjct 32127839 AAGATGCAGATCTTCGTGAAAACCCTAACGGGTAAGACGATAACCCTCGAGGTCGAGTCC 32127898 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 |||||||||||| | ||||| ||||| ||||| |||||||| ||||| || Sbjct 32127899 TCCGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGGATCCCTCCGGAC 32127958 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 || || |||| || | || ||| || || || ||||| | | | || |||||| Sbjct 32127959 CAGCAGCGACTGATATTCGCCGGGAAGCAGCTGGAAGACGGCCGCACTCTCGCCGACTAC 32128018 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||| || || || || || | ||||| ||||| Sbjct 32128019 AACATCCAGAAGGAGTCGACGCTTCATCTCGTCCT 32128053 Score = 82.4 bits (90), Expect = 7e-11 Identities = 158/233 (68%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 26763 AACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAA 26822 || || ||||| | || || |||||| | || || || | |||||| |||| | || Sbjct 16838040 AAGAAGATGCAGATATTCGTGAAAACACTGACGGGCAAGACCATCACCCTCGAGGTGGAG 16837981 Query 26823 TCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCC 26882 | ||||||||||| | ||||| ||||| ||||||||||| || || | Sbjct 16837980 AGCAGTGACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAAGAAGGAATCCCATCG 16837921 Query 26883 GATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGAC 26942 ||||| || || | || | | ||| ||||| || || |||| | | | | | ||| Sbjct 16837920 GATCAGCAGAGGTTGATCTTCACCGGAAAACAGCTTGAGGATGGTCGCACCTTGGCTGAC 16837861 Query 26943 TATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || ||||| || ||||| || ||| | ||||| || ||||| | || ||||| Sbjct 16837860 TACAACATCCAGAAAGAGTCGACTCTGCATCTTGTTCTGAGGTTAAGGGGAGG 16837808 >seq4 Length=50002108 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || ||||| |||| || || |||| ||| |||| | || || | Sbjct 49701960 ATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATAACCCTCGAGGTCGAGTCCTCC 49702019 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | ||||| ||||| ||||| ||||| || ||||| || || Sbjct 49702020 GACACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCTCCGGACCAG 49702079 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | ||||||| || ||| || || ||||| || | | | | || |||||| ||| Sbjct 49702080 CAGCGCCTCATTTTCGCCGGAAAGCAGCTCGAGGACGGACGCACCCTCGCCGACTACAAC 49702139 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGA 26996 || || || || || || | || ||||| || | || ||||||||| Sbjct 49702140 ATCCAGAAGGAGTCGACGCTTCACCTGGTTCTCCGTCTGAGAGGAGGA 49702187 Score = 91.5 bits (100), Expect = 1e-13 Identities = 116/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 || ||||| | || || ||||| |||| ||||| | |||||| |||| | || || Sbjct 45703293 AAGATGCAGATCTTCGTGAAAACCCTAACCGGAAAGACCATCACCCTCGAGGTCGAGTCC 45703352 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 |||||||||||| | ||||| ||||| ||||||||||| || ||||| ||| Sbjct 45703353 TCCGACACCATCGACAATGTCAAGGCCAAGATCCAAGACAAAGAAGGTATCCCTCCGGAT 45703412 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATG 26925 || || ||| | || | || ||| ||||| ||||| |||| Sbjct 45703413 CAGCAGAGATTGATCTTCGCCGGTAAACAGCTCGAGGATG 45703452 Score = 86.0 bits (94), Expect = 6e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || ||||| |||| || || | ||||| |||| | || || | Sbjct 24965262 ATGCAGATCTTCGTGAAAACCCTAACGGGCAAGACCATCACTCTCGAGGTCGAGTCCTCC 24965321 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | |||||| ||||| ||||||||||| || ||||| ||||| Sbjct 24965322 GACACCATCGACAATGTCAAAGCCAAGATCCAAGACAAAGAAGGTATCCCTCCGGATCAG 24965381 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATG 26925 || | || || | || ||| ||||| |||||||||| Sbjct 24965382 CAGCGTCTGATCTTCGCCGGTAAACAGCTCGAAGATG 24965418 >seq6 Length=53636577 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 26862 GACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAA 26921 ||||||||||| ||||| || || |||||||| ||||| | || ||| || || || ||| Sbjct 48283853 GACAAAGAAGGTATACCACCAGACCAACAAAGGCTCATCTTCGCCGGGAAGCAGCTTGAA 48283912 Query 26922 GATGATAGAAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTG 26981 || | ||| | | ||| || ||||| || ||||| |||||| |||| || ||| || Sbjct 48283913 GACGGCCGAACCCTAGCCGATTACAACATCCAGAAAGAGTCTACTCTCCACCTCGTCTTG 48283972 Query 26982 AGACTTAGAGGAGG 26995 || || ||||| || Sbjct 48283973 AGGCTCAGAGGTGG 48283986 >seq1946 Length=8506 Score = 89.7 bits (98), Expect = 5e-13 Identities = 120/166 (72%), Gaps = 1/166 (1%) Strand=Plus/Plus Query 26760 TCAAACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTA 26819 ||||| || ||||| | || || ||||| |||| || || | ||||| |||| | Sbjct 1961 TCAAA-AAGATGCAGATCTTCGTGAAAACCCTAACCGGCAAGACCATCACTCTCGAGGTC 2019 Query 26820 GAATCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCT 26879 || || |||||||||||| | |||||| ||||| ||||||||||| || ||| Sbjct 2020 GAGTCCTCCGACACCATCGACAATGTCAAAGCCAAGATCCAAGACAAAGAAGGTATCCCT 2079 Query 26880 CCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATG 26925 || ||||| || | || || | || ||| ||||| |||||||||| Sbjct 2080 CCGGATCAGCAGCGTCTGATCTTCGCCGGTAAACAGCTCGAAGATG 2125 >seq3342 Length=4839 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 || ||||| | || || ||||| |||| || || | |||||| |||| | || || Sbjct 2795 AAGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACAATCACCCTCGAGGTCGAGTCC 2736 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 |||||||||||| | ||||| ||||| ||||| ||||| || ||||| || Sbjct 2735 TCCGACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCTCCGGAC 2676 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 || || |||| || | || ||| || || || || || | | | | || |||||| Sbjct 2675 CAGCAGCGACTGATCTTCGCCGGGAAGCAGCTGGAGGACGGGCGCACCCTCGCCGACTAC 2616 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||| || || || || ||| |||| || ||||| Sbjct 2615 AACATCCAGAAGGAGTCGACTCTCCACCTCGTCCT 2581 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478598522502720