Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq654 98.7 3e-15 seq2 93.3 1e-13 seq5 87.8 5e-12 seq4 86.0 2e-11 >seq654 Length=29115 Score = 98.7 bits (108), Expect = 3e-15 Identities = 114/151 (75%), Gaps = 2/151 (1%) Strand=Plus/Plus Query 111672 ATGGCACTTCCACCATGTCATCTTATGTGCCA-GTTTTATGTACACGACGGGATGCTTTC 111730 ||||||||||| || || || | | | ||| | ||||||||| | || |||||| Sbjct 19629 ATGGCACTTCCTCCTTGGCA-CATGTTTGCTAAGTTTTATGTTGCAAATGGAGAGCTTTC 19687 Query 111731 ATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCAAG 111790 | |||||||||||||| || |||||||| |||||||||| |||||||| ||||| Sbjct 19688 GTTTCAAATGTATCAGCGCTCGGCTGATATCAGTCTTGGTGTACCGTTTAAAATTGCTTC 19747 Query 111791 TTACGCACTACTTACTTGCTTAATCGCTCAT 111821 ||| |||| ||||| ||| | |||||||| Sbjct 19748 ATACTCACTTCTTACATGCATCCTCGCTCAT 19778 >seq2 Length=43799612 Score = 93.3 bits (102), Expect = 1e-13 Identities = 112/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 111672 ATGGCACTTCCACCATGTCATCTTATGTGC-CAGTTTTATGTACACGACGGGATGCTTTC 111730 ||||| ||||| ||||| || | | | ||| |||||||| || | || ||| || Sbjct 41543539 ATGGCGCTTCCTCCATGCCA-CATGTTTGCTCAGTTTTACGTTGCAAATGGAGAGCTCTC 41543481 Query 111731 ATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCAAG 111790 || |||||||||||||| || |||||||| ||||||||||| || ||||| ||||| Sbjct 41543480 GTGTCAAATGTATCAGCGCTCAGCTGATATGGGTCTTGGTGTACCTTTTAACATTGCCTC 41543421 Query 111791 TTACGCACTACTTACTTGCTTAATCGCTCA 111820 |||| | || ||||| ||| | | ||||| Sbjct 41543420 TTACTCCCTTCTTACATGCATTCTAGCTCA 41543391 >seq5 Length=45943323 Score = 87.8 bits (96), Expect = 5e-12 Identities = 145/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 111672 ATGGCACTTCCACCATGTCATCTTATGTGC-CAGTTTTATGTACACGACGGGATGCTTTC 111730 ||||| ||||| || || || | | | || ||||| || || || ||| ||| || Sbjct 37434607 ATGGCGCTTCCTCCGTGCCA-CATGTTCGCACAGTTCTACGTGGCGGAAGGGGAGCTCTC 37434549 Query 111731 ATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCAAG 111790 || || ||||||||||| || || ||||| || |||||||| |||||||| ||||| Sbjct 37434548 GTGTCAGATGTATCAGCGTTCAGCGGATATGGGCCTTGGTGTGCCGTTTAACATTGCTTC 37434489 Query 111791 TTACGCACTACTTACTTGCTTAATCGCTCATTTTACAAATCTCAAACCGGGTGAATTCAT 111850 ||| | || || |||||| | | |||||| | |||| || ||||| || || Sbjct 37434488 CTACTCTCTTCTGACTTGCATGCTAGCTCATGTGTGTGATCTTGTTCCCGGTGATTTTAT 37434429 Query 111851 TCACGTTATCGGAGATGCGCATGTTTA 111877 || || || || ||||| ||||| || Sbjct 37434428 CCATGTCATTGGGGATGCTCATGTGTA 37434402 >seq4 Length=50002108 Score = 86.0 bits (94), Expect = 2e-11 Identities = 111/151 (74%), Gaps = 2/151 (1%) Strand=Plus/Plus Query 111672 ATGGCACTTCCACCATGTCATCTTATGTGC-CAGTTTTATGTACACGACGGGATGCTTTC 111730 |||| ||||| || || || | | | ||| ||||||||||| | || |||||| Sbjct 1656885 ATGGAACTTCTTCCTTGGCA-CATGTTTGCTCAGTTTTATGTTGCAAATGGAGAGCTTTC 1656943 Query 111731 ATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCAAG 111790 || |||||||||||||| || |||||||| |||||||||| |||||||| | | Sbjct 1656944 GTGTCAAATGTATCAGCGCTCAGCTGATATCAGTCTTGGTGTACCGTTTAACAGGCCTTC 1657003 Query 111791 TTACGCACTACTTACTTGCTTAATCGCTCAT 111821 ||| |||| ||||| ||| | |||||||| Sbjct 1657004 ATACTCACTTCTTACATGCATCCTCGCTCAT 1657034 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303175319148632