Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq4 105 6e-18 seq5 104 2e-17 seq6 102 7e-17 seq3 102 7e-17 seq1946 100 2e-16 seq3342 95.1 1e-14 seq7 89.7 4e-13 >seq4 Length=50002108 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| |||| || || |||| ||| |||| |||||| || | Sbjct 49701960 ATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATAACCCTCGAGGTCGAGTCCTCC 49702019 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| ||||| ||||| |||||||| ||||| || || Sbjct 49702020 GACACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCTCCGGACCAG 49702079 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | || |||| || ||| ||||| ||||| || | | | | || ||| || ||| Sbjct 49702080 CAGCGCCTCATTTTCGCCGGAAAGCAGCTCGAGGACGGACGCACCCTCGCCGACTACAAC 49702139 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 || || || || || || |||| | || | | ||||||||||| Sbjct 49702140 ATCCAGAAGGAGTCGACGCTTCACCTGGTTCTCCGTCTGAGAGGAGGA 49702187 Score = 104 bits (114), Expect = 2e-17 Identities = 119/160 (74%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 || ||||| | || || ||||| |||| ||||| | || ||| |||| |||||| || Sbjct 45703293 AAGATGCAGATCTTCGTGAAAACCCTAACCGGAAAGACCATCACCCTCGAGGTCGAGTCC 45703352 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 |||||||||||| | ||||| ||||| ||||||||||| || ||||| ||| Sbjct 45703353 TCCGACACCATCGACAATGTCAAGGCCAAGATCCAAGACAAAGAAGGTATCCCTCCGGAT 45703412 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG 24147 || |||||| |||| | || ||| || || ||||| |||| Sbjct 45703413 CAGCAGAGATTGATCTTCGCCGGTAAACAGCTCGAGGATG 45703452 Score = 98.7 bits (108), Expect = 9e-16 Identities = 116/157 (74%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| |||| || || | || || |||| |||||| || | Sbjct 24965262 ATGCAGATCTTCGTGAAAACCCTAACGGGCAAGACCATCACTCTCGAGGTCGAGTCCTCC 24965321 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | |||||| ||||| ||||||||||| || ||||| ||||| Sbjct 24965322 GACACCATCGACAATGTCAAAGCCAAGATCCAAGACAAAGAAGGTATCCCTCCGGATCAG 24965381 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG 24147 ||| | ||||| | || ||| || || |||||||||| Sbjct 24965382 CAGCGTCTGATCTTCGCCGGTAAACAGCTCGAAGATG 24965418 >seq5 Length=45943323 Score = 104 bits (114), Expect = 2e-17 Identities = 147/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 || ||||| | || || ||||| |||| || || |||| ||| |||| |||||| || Sbjct 32127839 AAGATGCAGATCTTCGTGAAAACCCTAACGGGTAAGACGATAACCCTCGAGGTCGAGTCC 32127898 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 |||||||||||| | ||||| ||||| ||||| ||||| || ||||| || Sbjct 32127899 TCCGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGGATCCCTCCGGAC 32127958 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 || ||| ||||||| | || ||| ||||| || ||||| | | | | || ||| || Sbjct 32127959 CAGCAGCGACTGATATTCGCCGGGAAGCAGCTGGAAGACGGCCGCACTCTCGCCGACTAC 32128018 Query 24168 AACATTCAAAAAGAATCTACAATTCAT 24194 ||||| || || || || || ||||| Sbjct 32128019 AACATCCAGAAGGAGTCGACGCTTCAT 32128045 >seq6 Length=53636577 Score = 102 bits (112), Expect = 7e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 |||||||| | ||||| ||||| |||| || || |||| ||| | || ||||| | Sbjct 30639946 AAAATGCAGATCTTTGTGAAAACCCTAACGGGGAAGACGATAACCCTAGAGGTCGAATCA 30640005 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 |||||| ||||| | ||||| |||||| ||||| ||||| || || || || Sbjct 30640006 TCCGACACGATCGACAATGTCAAGGCCAAGATTCAGGACAAGGAAGGGATCCCACCGGAC 30640065 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 || ||| | ||||| | || ||| ||||| |||||||| | || | || || || Sbjct 30640066 CAGCAGCGTCTGATCTTCGCCGGGAAGCAGCTCGAAGACGGGAGGACGCTCGCGGACTAC 30640125 Query 24168 AACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 ||||| || || || || || |||| || ||| | | ||||||||||| Sbjct 30640126 AACATCCAGAAGGAGTCGACGCTTCACTTGGTGCTCCGCCTGAGAGGAGGA 30640176 >seq3 Length=29132933 Score = 102 bits (112), Expect = 7e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | || ||||| | || ||| |||| || || | | Sbjct 9516666 ATGCAGATCTTCGTTAAGACTCTCACGGGAAAGACCATCACCCTCGAGGTGGAAAGCTCC 9516725 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | |||||| ||||| ||||| ||||| || ||||| ||||| Sbjct 9516726 GACACCATCGACAACGTCAAAGCCAAGATCCAGGACAAGGAAGGTATCCCTCCGGATCAG 9516785 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| || || | || ||||||||| |||||||| | ||||| | ||| || ||| Sbjct 9516786 CAGAGGCTCATCTTCGCCGGCAAGCAGCTCGAAGACGGCAGAACATTGGCCGACTACAAC 9516845 Query 24171 ATTCAAAAAGAATCTACAATTCAT 24194 || || || || ||||| ||||| Sbjct 9516846 ATCCAGAAGGAGTCTACGCTTCAT 9516869 Score = 102 bits (112), Expect = 7e-17 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || || || ||||| | ||||| | || || |||| | | Sbjct 9516894 ATGCAGATCTTTGTCAAGACTTTGACCGGAAAGACCATTACTTTGGAGGTTGAGGGCTCC 9516953 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| ||||| ||||| || || || ||||| || || Sbjct 9516954 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCTCCGGACCAG 9517013 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169 |||||| |||| | || || ||||| || || || | || ||| | || |||||||| Sbjct 9517014 CAGAGATTGATATTCGCTGGAAAGCAGCTTGAGGACGGTAG-AACATTGGCTGATTATAA 9517072 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 ||| || ||||| ||||| |||| || ||||| Sbjct 9517073 CATCCAGAAAGAGTCTACGCTTCACTTGGTGTT 9517105 Score = 100 bits (110), Expect = 2e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 || ||||| | || || ||||| |||| || || | || ||| |||| |||||| || Sbjct 11118618 AAGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACAATCACCCTCGAGGTCGAGTCC 11118559 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 |||||||||||| | ||||| ||||| ||||| |||||||| ||||| || Sbjct 11118558 TCCGACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCTCCGGAC 11118499 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 || ||| ||||||| | || ||| ||||| || || || | | | | || ||| || Sbjct 11118498 CAGCAGCGACTGATCTTCGCCGGAAAGCAGCTGGAGGACGGGCGCACCCTCGCCGACTAC 11118439 Query 24168 AACATTCAAAAAGAATCTAC 24187 ||||| || || || ||||| Sbjct 11118438 AACATCCAGAAGGAGTCTAC 11118419 Score = 93.3 bits (102), Expect = 4e-14 Identities = 149/213 (70%), Gaps = 1/213 (0%) Strand=Plus/Minus Query 23982 CCAAACAAA-ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGT 24040 |||||| || ||||| | || || ||||| | || ||||| | || ||| |||| || Sbjct 16259090 CCAAACCAAGATGCAGATCTTCGTGAAAACTCTCACGGGAAAGACAATCACCCTCGAGGT 16259031 Query 24041 CGAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACC 24100 || | |||||||||||| | || ||| ||||| ||||| ||||| || || Sbjct 16259030 GGAAAGCTCCGACACCATCGACAACGTGAAAGCCAAGATCCAGGACAAGGAAGGGATCCC 16258971 Query 24101 TCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAG 24160 ||| ||||| ||| | || || | || ||| ||||| ||||| |||| ||| | | Sbjct 16258970 TCCGGATCAGCAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAGGATGGTCGAACCTTGGC 16258911 Query 24161 CGATTATAACATTCAAAAAGAATCTACAATTCA 24193 ||| || ||||| || || || ||||| |||| Sbjct 16258910 CGACTACAACATCCAGAAGGAGTCTACGCTTCA 16258878 >seq1946 Length=8506 Score = 100 bits (110), Expect = 2e-16 Identities = 120/163 (74%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 23985 AACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAG 24044 || || ||||| | || || ||||| |||| || || | || || |||| |||||| Sbjct 1963 AAAAAGATGCAGATCTTCGTGAAAACCCTAACCGGCAAGACCATCACTCTCGAGGTCGAG 2022 Query 24045 GCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCC 24104 || |||||||||||| | |||||| ||||| ||||||||||| || ||||| Sbjct 2023 TCCTCCGACACCATCGACAATGTCAAAGCCAAGATCCAAGACAAAGAAGGTATCCCTCCG 2082 Query 24105 GATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG 24147 ||||| ||| | ||||| | || ||| || || |||||||||| Sbjct 2083 GATCAGCAGCGTCTGATCTTCGCCGGTAAACAGCTCGAAGATG 2125 >seq3342 Length=4839 Score = 95.1 bits (104), Expect = 1e-14 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 || ||||| | || || ||||| |||| || || | || ||| |||| |||||| || Sbjct 2795 AAGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACAATCACCCTCGAGGTCGAGTCC 2736 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 |||||||||||| | ||||| ||||| ||||| |||||||| ||||| || Sbjct 2735 TCCGACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCTCCGGAC 2676 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 || ||| ||||||| | || ||| ||||| || || || | | | | || ||| || Sbjct 2675 CAGCAGCGACTGATCTTCGCCGGGAAGCAGCTGGAGGACGGGCGCACCCTCGCCGACTAC 2616 Query 24168 AACATTCAAAAAGAATCTAC 24187 ||||| || || || || || Sbjct 2615 AACATCCAGAAGGAGTCGAC 2596 >seq7 Length=27187321 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || ||||| | || || || | || || ||||||||||| | | Sbjct 640570 ATGCAAATTTTCGTGAAAACTCTCACCGGCAAGACCATCACTCTCGAAGTCGAGAGCTCC 640511 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| ||||| ||||| ||||| || ||||| || || Sbjct 640510 GACACCATCGATAACGTCAAGGCTAAGATCCAGGACAAGGAAGGTATTCCTCCGGACCAG 640451 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| || || | || ||| || || ||||| |||| | | | | ||| || ||| Sbjct 640450 CAGAGGCTCATCTTCGCCGGTAAACAGCTCGAGGATGGACGTACCTTGGCCGACTACAAC 640391 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || || || || || || | ||| | || | || |||||||| || Sbjct 640390 ATCCAGAAGGAGTCGACTCTCCATCTCGTTCTCAGGTTGAGAGGTGG 640344 Score = 89.7 bits (98), Expect = 4e-13 Identities = 144/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 || ||||| | || || ||||| |||| || || |||| ||| |||| ||||| | Sbjct 17980154 AAGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATCACCCTCGAGGTCGAATCA 17980095 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 |||||||||||| | |||||| ||||| ||||| ||||| || || || || Sbjct 17980094 TCCGACACCATCGACAATGTCAAAGCCAAGATCCAGGACAAGGAAGGAATCCCACCGGAC 17980035 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 || ||| ||||||| | || ||| || || || ||||| | | | | || ||| || Sbjct 17980034 CAGCAGCGACTGATCTTCGCCGGGAAACAGCTGGAAGACGGCCGCACACTCGCCGACTAC 17979975 Query 24168 AACATTCAAAAAGAATCTACAATTCAT 24194 ||||| || || || || || ||||| Sbjct 17979974 AACATCCAGAAGGAGTCGACGCTTCAT 17979948 Score = 82.4 bits (90), Expect = 7e-11 Identities = 105/145 (72%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 |||||| ||||| | || ||| ||||| || || ||||| || ||||||||||| Sbjct 456541 CGACACGATCGACAACGTTAAAGCCAAGATCCAGGATAAGGAAGGTATCCCTCCCGATCA 456600 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||||| |||| | || ||| ||||| |||||||||| ||| | | ||||| || Sbjct 456601 GCAGAGGTTGATCTTCGCCGGTAAGCAGCTCGAAGATGGCAGGACTCTTGCTGATTACAA 456660 Query 24170 CATTCAAAAAGAATCTACAATTCAT 24194 ||| || ||||| || || ||||| Sbjct 456661 CATCCACAAAGAGTCCACTCTTCAT 456685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429880059414780