Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq8 131 1e-25 seq3 131 1e-25 seq1 131 1e-25 seq4 122 6e-23 seq51 113 3e-20 seq7 105 4e-18 seq5 95.1 8e-15 seq9 89.7 3e-13 >seq8 Length=29681327 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| ||||||||| |||| || |||||||| Sbjct 17897619 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGT 17897560 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 17897559 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 17897525 >seq3 Length=29132933 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| ||||||||| |||| || |||||||| Sbjct 3017392 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGT 3017333 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 3017332 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 3017298 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| ||||||||| |||| || |||||||| Sbjct 10453778 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGT 10453719 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 10453718 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 10453684 Score = 96.9 bits (106), Expect = 2e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| |||| |||| |||||||||||||||||||||||| | Sbjct 10451653 CTCTCTTTTCAAAGTCCTTTTCATCTTTACCTCGCGGTACTTGTTCGCTATCGGTCTCTC 10451594 Query 20007 GGTAATATTTAGCCTT 20022 | |||||||||||| Sbjct 10451593 GCCCATATTTAGCCTT 10451578 Score = 89.7 bits (98), Expect = 3e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | |||||||||||| ||||| || |||||| || || ||||| || | Sbjct 2316776 TACCACCACGTAGACGCAACACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCTG 2316835 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | | | | || || | || || |||||||| || || | || ||||| | | Sbjct 2316836 CTAGAGTCCTTCCATCCTCAAGCTGCTTCCCGGCAAAGATAAGCCTCTGCTGATCCGGAG 2316895 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| |||||| || ||| || || ||| || || | || || || ||||| | Sbjct 2316896 GGATGCCTTCCTTATCCTGGATCTTGGCCTTAACGTTGTCGATGGTGTCGGAGCTTTCCA 2316955 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || | || || || || || || | |||||||||||||||||||| Sbjct 2316956 CCTCGAGGGTGATGGTCTTTCCTGTGAGAGTTTTCACGAATATCTGCAT 2317004 Score = 89.7 bits (98), Expect = 3e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | |||||||||||| ||||| || |||||| || || ||||| || | Sbjct 2324571 TACCACCACGTAGACGCAACACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCTG 2324630 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | | | | || || | || || |||||||| || || | || ||||| | | Sbjct 2324631 CTAGAGTCCTTCCATCCTCAAGCTGCTTCCCGGCAAAGATAAGCCTCTGCTGATCCGGAG 2324690 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| |||||| || ||| || || ||| || || | || || || ||||| | Sbjct 2324691 GGATGCCTTCCTTATCCTGGATCTTGGCCTTAACGTTGTCGATGGTGTCGGAGCTTTCCA 2324750 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || | || || || || || || | |||||||||||||||||||| Sbjct 2324751 CCTCGAGGGTGATGGTCTTTCCTGTGAGAGTTTTCACGAATATCTGCAT 2324799 >seq1 Length=26309735 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| ||||||||| |||| || |||||||| Sbjct 23849990 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGT 23849931 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 23849930 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 23849896 Score = 93.3 bits (102), Expect = 3e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| |||| |||| |||||||||||||||||| ||||| | Sbjct 10020713 CTCTCTTTTCAAAGTCCTTTTCATCTTTACCTCGCGGTACTTGTTCGCTATCAGTCTCTC 10020772 Query 20007 GGTAATATTTAGCCTT 20022 | |||||||||||| Sbjct 10020773 GCCCATATTTAGCCTT 10020788 >seq4 Length=50002108 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||| |||||||||| ||||||||| |||| || |||||||| Sbjct 27232968 AAGCCCGTTCCCTTGGCTATGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGT 27233027 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||| | |||||||||||||||||||||||||||| Sbjct 27233028 TAATTCATTCATGCGCGTCACTAATTAGATGACGA 27233062 Score = 113 bits (124), Expect = 3e-20 Identities = 82/95 (86%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||| ||||||||||| ||||||||| |||| | |||||| | Sbjct 27204558 AAGCCCGTTCCCTTGGCAGTGGTTTCGCTGGATAGTAGACAGGGACAGTGAGAATCTCAT 27204617 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||| ||||||||||||||||| Sbjct 27204618 TAATCCATTCATGCGCGACACTAATTAGATGACGA 27204652 >seq51 Length=258232 Score = 113 bits (124), Expect = 3e-20 Identities = 83/95 (87%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGG----GT-AATCTCGT 25956 |||||| ||||||||| |||||||||||| ||||||||| |||| || |||||||| Sbjct 87552 AAGCCCATTCCCTTGGATGTGGTTTCGCTGGATAGTAGACAGGGACAATGTGAATCTCGT 87493 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| ||||||||||| |||||||||||||||| Sbjct 87492 TAATCCATTCATGCGCGTAACTAATTAGATGACGA 87458 Score = 96.9 bits (106), Expect = 2e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| |||| |||| |||||||||||||||||||||||| | Sbjct 85896 CTCTCTTTTCAAAGTCCTTTTCATCTTTACCTCGCGGTACTTGTTCGCTATCGGTCTCTC 85837 Query 20007 GGTAATATTTAGCCTT 20022 | |||||||||||| Sbjct 85836 GCCCATATTTAGCCTT 85821 >seq7 Length=27187321 Score = 105 bits (116), Expect = 4e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | | ||| | ||||| ||||| || ||| || ||||| ||||| |||| | Sbjct 456939 CCACCACGAAGACGGAGGACCAAGTGAAGGGTCGACTCTTTCTGAATGTTGTAGTCAGCC 456880 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 ||| || | || |||| || || || ||||| || || || || || || | ||| Sbjct 456879 AAAGTGCGACCATCCTCTAGCTGCTTCCCAGCAAAGATGAGACGCTGCTGGTCCGGTGGG 456820 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | |||||| |||||| |||||| || || || | || ||| | |||||| || Sbjct 456819 ATGCCTTCCTTGTCCTGAATTTTGGCTTTGACGTTGTCGATAGTGTTGGAACTTTCCACC 456760 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || | || || || || || ||||||||||| ||||| ||||||||| Sbjct 456759 TCAAGAGTGATGGTCTTGCCGGTCAAGGTTTTGACGAAGATCTGCATG 456712 >seq5 Length=45943323 Score = 95.1 bits (104), Expect = 8e-15 Identities = 160/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||| || || || | || || | ||| ||||| ||| || || || ||||| |||| Sbjct 16837806 TACCTCCCCTTAACCTCAGAACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAG 16837865 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||| || | || || | |||||||||| || || | | || ||||| || | Sbjct 16837866 CCAAGGTGCGACCATCCTCAAGCTGTTTTCCGGTGAAGATCAACCTCTGCTGATCCGATG 16837925 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| |||||||||||| || || ||| ||||| | || || || | || || | Sbjct 16837926 GGATTCCTTCTTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCACTGCTCTCCA 16837985 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 | || | || || || || ||||||| |||||||||||||||||||| || Sbjct 16837986 CCTCGAGGGTGATGGTCTTGCCCGTCAGTGTTTTCACGAATATCTGCATCTT 16838037 >seq9 Length=38354807 Score = 89.7 bits (98), Expect = 3e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||| || | | ||||||||||||||||||||| ||| |||||||| |||||||| | Sbjct 21327373 TACCTCCACGTAGACGCAACACCAAATGAAGAGTCGACTCTTTTTGAATGTTGTAATCTG 21327432 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 |||| || | || || | || ||||| || || || || || || || || | | Sbjct 21327433 CCAAAGTGCGACCATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGTG 21327492 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| || || ||||| || || |||||| || | | || || ||| || | Sbjct 21327493 GGATTCCCTCCTTGTCTTGGATCTTAGCCTTCACGTTGTCAATGGTGTCGGAACTCTCCA 21327552 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || | || || || || || |||| || || ||||| |||||||| Sbjct 21327553 CCTCCAGAGTGATGGTCTTCCCGGTCAGTGTCTTAACGAAGATCTGCAT 21327601 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334903618763756