Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq4 143 3e-29 seq8 113 6e-20 seq6 105 8e-18 >seq4 Length=50002108 Score = 143 bits (158), Expect = 3e-29 Identities = 389/585 (66%), Gaps = 8/585 (1%) Strand=Plus/Minus Query 32655 ATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAAC 32714 |||| || |||||||||||||| || ||||||||||| || | |||||||| || Sbjct 15359141 ATCAGGCAGGCGAAATCGCAGTGAAGCCCCTCGTCTCTCGAGATCAGCTCGTTGGAGAAG 15359082 Query 32715 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGA 32773 || || || ||||| || |||||||| || ||||| || || || ||| || ||| || Sbjct 15359081 GTCAGACCAGGCATGAGCCCACGCTTCTTGAGCCAGAAGATCGA-GCAGAAGCTTCCGGA 15359023 Query 32774 AAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCT-CTCCATAACCGGCGCTGT 32832 ||||| || ||||| || || ||||| | | |||| | | | | | | | | Sbjct 15359022 GAAGAAGATCCCTTCCACGCAGGCGAAGGCGACGATCCTCTCCGCGAAAGTCTGAGAT-C 15358964 Query 32833 CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAG 32892 | | |||||||| ||||| | ||||||||| || || || || ||||| || | Sbjct 15358963 CGTCGATCCACTTCATGGCCCATTGGGCCTTCTTCGCGACGCAGGGGATGGTCTCGATGG 15358904 Query 32893 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTAT 32952 | ||||||| || | || || |||| || | || || || | || || |||| Sbjct 15358903 CCCGGAAGAGATGGTCCCTCTCCTTGTTATCCTTGATGTAGGTGTCGAGCAGGAGGCTAT 15358844 Query 32953 ACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGG 33012 |||| || || || ||||| ||||| || || || || ||||||||| | ||||||| Sbjct 15358843 ACATCTCTGAGTGGATGTTCTCAATCGCGATCTGGAAGCCGTAGAAGGCACGCGCCTCGG 15358784 Query 33013 TAATCTGTACTTCTGTACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTG 33071 | ||| || || | ||| || || || | || || || |||||||| | Sbjct 15358783 AGACCTGGACGTC-GGACATGAACCGGGAGGCGAGGTTCTCCAGGACGATTCCGTCGGAG 15358725 Query 33072 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTATT 33130 || || || || || | || ||||| || || | || || | ||| || || | Sbjct 15358724 GCGGCGAAGAAGGCTAGGACGTGTTTGATGAAGTGGCGCTC-TCCGTCGTTGAGATTCTC 15358666 Query 33131 CCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGC 33190 ||| || | ||| || | ||| ||||| || | ||||| || || || || || Sbjct 15358665 CCAGTCGCGTGTGTCTCCGGAGAGATCGACTTCCTCGGCGGTCCAGAAGGAGGCTTCGGC 15358606 Query 33191 CTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAAT 33235 ||| || ||||| | |||||| | | ||||| ||||| || || Sbjct 15358605 CTTCTTGTACATCTCCCAGATCTGTGGGTATTGGATTGGGAACAT 15358561 >seq8 Length=29681327 Score = 113 bits (124), Expect = 6e-20 Identities = 148/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 63226 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63285 |||||| || || | ||| | ||| |||| ||| | || | || |||||||| |||||| Sbjct 8204240 TCCTCCTTGGTCAACGTAGCGAGCAGTGTCATTGAATACCCGCAGCATTGGAACAATACC 8204181 Query 63286 ATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63345 ||| ||||| ||||| || || || |||||||| | ||||| || || || || Sbjct 8204180 ATTCGATGTTCCATTTGTGCCACGAATGTAGCTTCCTGTTGCACGGATGTTGTGAACAGA 8204121 Query 63346 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 63405 | |||||||||||| || |||| || | ||| || ||| || || ||||| || Sbjct 8204120 AACACCTATTCCCCCAGCTGATTTACTAATAACTGCACACTCTTTCAATGTTTCATATAT 8204061 Query 63406 GCCCTCTATACTATCATCCATCATG 63430 ||||| || ||||||||| ||||| Sbjct 8204060 TCCCTCAATGCTATCATCCTTCATG 8204036 Score = 82.4 bits (90), Expect = 1e-10 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 63466 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATT 63525 |||||| | ||| || | || ||||| || ||||||||||| | ||| | | || Sbjct 8203910 AGTTCCTGAATTGAAGAGAGTCGGAGACGCATGAGTAAACCACCGCTGAGACATCAAATG 8203851 Query 63526 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63585 ||| || | || || || || | ||| || ||||| || || | || | ||| | Sbjct 8203850 GTAAGTTTTGATTGCGGAATCAACATCTTCTTTGTGAATGCCGACAGAAACCCTCATGAG 8203791 Query 63586 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63645 |||||||||||| |||||||| | || | | ||| || | ||| ||| | || | Sbjct 8203790 CATGTGCTGAGGCCTTTCAACCACTTTCCCATGGACTTTTAAGAGGTACGATCTCTCGAG 8203731 Query 63646 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63693 |||||| |||||||| |||| || ||| ||||| || || || || Sbjct 8203730 AGTTTTGAAACCAAAGTAGTCATACTCAAAATCTCGATCATAGATGAT 8203683 >seq6 Length=53636577 Score = 105 bits (116), Expect = 8e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 63466 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATT 63525 |||||| | ||||| | || |||||||| |||||||||||| | ||| | || || Sbjct 23786456 AGTTCCTGAGTTAAAGAGAGTGGGAGAAGCATGAGTAAACCATCGCTGAGACATTAAATG 23786397 Query 63526 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63585 ||| || | || || || || ||||| || ||||| || || | ||| | ||| | Sbjct 23786396 GTAAGTTTGGATTGCAGAATCAATATCATCTTTGTGAATGCCAACAGAGACCCTCATGAG 23786337 Query 63586 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63645 ||||||||| || |||||||| | ||| | | |||||| | ||| ||| | || | Sbjct 23786336 CATGTGCTGTGGCCTTTCAACAACTTTGCCATGGACTTTCAAGAGGTATGATCTCTCAAG 23786277 Query 63646 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63693 |||||| || ||||| |||| ||| ||| || || || || || || Sbjct 23786276 AGTTTTGAATCCAAAGTAGTCATATTCAAAATCACGATCATAGATGAT 23786229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633547441809600