Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq9 116 3e-21 seq5 105 6e-18 seq3 98.7 9e-16 seq1946 96.9 3e-15 seq7 95.1 1e-14 seq4 87.8 2e-12 >seq9 Length=38354807 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||||| || ||||||| | || |||||| || Sbjct 21327601 ATGCAGATCTTCGTTAAGACACTGACCGGGAAGACCATCACTCTGGAGGTGGAGAGTTCC 21327542 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || ||||| || ||| ||||| || || || ||||| ||||| Sbjct 21327541 GACACCATTGACAACGTGAAGGCTAAGATCCAAGACAAGGAGGGAATCCCACCGGACCAG 21327482 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || || || || || | || |||| ||||||| ||| |||||||| Sbjct 21327481 CAGCGTCTCATCTTCGCTGGAAAGCAGCTCGAGGATGGTCGCACTTTGGCAGATTACAAC 21327422 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||||||||| || || || ||||| ||| | | ||| | ||||| Sbjct 21327421 ATTCAAAAAGAGTCGACTCTTCATTTGGTGTTGCGTCTACGTGGAGG 21327375 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| |||||||| || ||||||| | || |||||| || Sbjct 21327829 ATGCAGATCTTTGTCAAGACGTTGACCGGAAAGACCATCACTTTGGAGGTGGAGAGCTCC 21327770 Query 25059 GACACTATCGAGT-CACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || || | | |||| || | || || || || ||||| ||||| ||||| Sbjct 21327769 GACACCATTGACAACGTTAAAGCTAAGATCCAA-GATAAGGAGGGGATCCCACCGGACCA 21327711 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| | | || ||||||||||| || || ||||||| ||||||| ||| || ||||| Sbjct 21327710 GCAGAGATTGATCTTTGCCGGCAAGCAGTTGGAAGATGGTCGCACTTTGGCTGACTACAA 21327651 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || || || ||||| || || || | | ||| | ||||| Sbjct 21327650 CATCCAGAAGGAGTCTACGCTCCACTTGGTCTTGCGTCTACGTGGAGG 21327603 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||| || ||| | || || | || |||||| || Sbjct 21328057 ATGCAGATCTTCGTTAAGACCTTGACGGGAAAAACTATTACCCTAGAGGTGGAGAGCTCC 21327998 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || |||| ||| ||| ||||| || ||||| ||||| ||||| Sbjct 21327997 GACACCATTGACAACGTGAAAGCAAAGATCCAGGACAAGGAGGGGATCCCACCGGACCAG 21327938 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||||||||| || | ||||| | | ||| | | || ||||| Sbjct 21327937 CAGAGGTTGATCTTTGCCGGCAAGCAGCTTGAAGACGGCAGAACTCTCGCTGACTACAAC 21327878 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216 || || || || ||||| || || || || || ||||| Sbjct 21327877 ATCCAGAAGGAGTCCACCCTCCACTTGGTTCTCAGGCT 21327840 >seq5 Length=45943323 Score = 105 bits (116), Expect = 6e-18 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| ||||| || || || |||| || || ||||||| |||| |||||| | Sbjct 16838034 ATGCAGATATTCGTGAAAACACTGACGGGCAAGACCATCACCCTCGAGGTGGAGAGCAGT 16837975 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| ||||| || || ||| || ||| ||||||||||| || ||| | || | Sbjct 16837974 GACACCATCGA--CAATGTCAAGGCCAAGATCCAGGACAAAGAAGGAATCCCATCGGATC 16837917 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||| || | || || |||| ||||| | || |||| |||||| ||| || |||| Sbjct 16837916 AGCAGAGGTTGATCTTCACCGGAAAACAGCTTGAGGATGGTCGCACCTTGGCTGACTACA 16837857 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 | || || ||||| || || || ||| | || || ||| |||| ||||| Sbjct 16837856 ACATCCAGAAAGAGTCGACTCTGCATCTTGTTCTGAGGTTAAGGGGAGG 16837808 >seq3 Length=29132933 Score = 98.7 bits (108), Expect = 9e-16 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| ||||||||||| |||||||| | || |||||| ||| Sbjct 2316539 ATGCAGATTTTTGTGAAGACCTTGACCGGTAAGACCATCACACTTGAGGTGGAGAGCTCT 2316480 Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || || |||| || || | ||| ||||| ||||| || || || || || Sbjct 2316479 GACACCATTGACAACGTGAAGGCCAAGATTCA-GGACAAGGAAGGCATCCCTCCGGATCA 2316421 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | || || || || || || | || |||| |||||| | | || ||||| Sbjct 2316420 GCAGCGTCTCATCTTCGCTGGAAAGCAGCTCGAGGATGGTCGCACCTTAGCAGACTACAA 2316361 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || || || || || || || || Sbjct 2316360 CATCCAGAAGGAGTCGACCCTTCACTTGGTCCT 2316328 Score = 98.7 bits (108), Expect = 9e-16 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| ||||||||||| |||||||| | || |||||| ||| Sbjct 2324113 ATGCAGATTTTTGTGAAGACCTTGACCGGTAAGACCATCACACTTGAGGTGGAGAGCTCT 2324054 Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || || |||| || || | ||| ||||| ||||| || || || || || Sbjct 2324053 GACACCATTGACAACGTGAAGGCCAAGATTCA-GGACAAGGAAGGCATCCCTCCGGATCA 2323995 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | || || || || || || | || |||| |||||| | | || ||||| Sbjct 2323994 GCAGCGTCTCATCTTCGCTGGAAAGCAGCTCGAGGATGGTCGCACCTTAGCAGACTACAA 2323935 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || || || || || || || || Sbjct 2323934 CATCCAGAAGGAGTCGACCCTTCACTTGGTCCT 2323902 Score = 93.3 bits (102), Expect = 4e-14 Identities = 153/222 (69%), Gaps = 6/222 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| |||||||||||||| || | ||||| | || |||||| || Sbjct 2324343 ATGCAGATTTTTGTCAAGACTTTGACCGGAAAGACTATCACTTTGGAGGTGGAGAGCTCC 2324284 Query 25059 GACACTATCGAGTCACTG----AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 |||||||| || || | | ||| ||||| ||||| || || || || Sbjct 2324283 GACACTATTGA--CAACGTNNNNNNNNNNAGATCCAGGACAAGGAAGGCATCCCTCCGGA 2324226 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| ||||| | || || || || || || | || |||| |||||| ||| || || Sbjct 2324225 CCAGCAGCGTCTCATCTTCGCTGGAAAGCAGCTTGAGGATGGTCGCACCTTGGCTGACTA 2324166 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216 ||| || || || || || || || || || ||||||||||| Sbjct 2324165 CAACATCCAGAAGGAGTCAACACTTCACTTGGTGCTAAGGCT 2324124 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| |||||||| || | ||||| | || |||||| || Sbjct 2324571 ATGCAGATCTTTGTCAAGACATTGACCGGAAAGACTATCACTTTGGAGGTGGAGAGCTCC 2324512 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 |||||||| || | ||| || ||| || || || || || ||||| ||||| Sbjct 2324511 GACACTATTGACAACGTTAAGGCTAAGATCCAGGATAAGGAGGGTATCCCACCGGACCAG 2324452 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||||||||| || | || |||| | ||| | | || ||||| Sbjct 2324451 CAGAGGTTGATCTTTGCCGGCAAGCAGCTCGAGGATGGAAGGACTCTTGCTGACTACAAC 2324392 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216 ||||| || || || || | ||| | || || ||||| Sbjct 2324391 ATTCAGAAGGAGTCAACTTTGCATCTCGTCCTCAGGCT 2324354 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/215 (70%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||||||||| || || | || || | || |||||| || Sbjct 16258624 ATGCAGATCTTTGTCAAGACTTTGACTGGAAAGACTATTACTTTGGAGGTGGAGAGCTCG 16258565 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || ||||| || || || |||| || ||| ||||| ||||| || || || ||| Sbjct 16258564 GATACTATTGA--CAATGTCAAAGC-CAAGATCCAGGACAAGGAAGGCATCCCTCCGGAC 16258508 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||||| | || || || || || || | || |||| |||||| ||| |||||| Sbjct 16258507 CAGCAGCGTCTCATCTTCGCTGGAAAGCAGCTCGAGGATGGTCGCACCTTGGCTGATTAC 16258448 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || || || || || || || || || Sbjct 16258447 AACATCCAGAAGGAGTCGACCCTTCACTTGGTCCT 16258413 Score = 84.2 bits (92), Expect = 2e-11 Identities = 154/227 (68%), Gaps = 9/227 (4%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| |||||||| || | ||||| | || |||||| || Sbjct 2316776 ATGCAGATCTTTGTCAAGACATTGACCGGAAAGACTATCACTTTGGAGGTGGAGAGCTCC 2316717 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 |||||||| || | ||| || ||| || || || || || ||||| ||||| Sbjct 2316716 GACACTATTGACAACGTTAAGGCTAAGATCCAGGATAAGGAGGGTATCCCACCGGACCAG 2316657 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACT---------GTGGGC 25169 ||| || | || ||||||||||| || | || |||| | ||| ||| Sbjct 2316656 CAGAGGTTGATCTTTGCCGGCAAGCAGCTCGAGGATGGAAGGACTCTTGCTGACTTGGCT 2316597 Query 25170 GATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216 || ||||| || || || || || || || || || ||||||||||| Sbjct 2316596 GACTACAACATCCAGAAGGAGTCAACACTTCACTTGGTGCTAAGGCT 2316550 >seq1946 Length=8506 Score = 96.9 bits (106), Expect = 3e-15 Identities = 139/193 (72%), Gaps = 6/193 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || || | ||||| || ||||||| |||| || ||||| || Sbjct 1969 ATGCAGATCTTCGTGAAAACCCTAACCGGCAAGACCATCACTCTCGAGGTCGAGTCCTCC 2028 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| ||||| || || |||| || | || ||||||||||| || || || || Sbjct 2029 GACACCATCGA--CAATGTCAAAGCCAAGATCCAA-GACAAAGAAGGTATCCCTCCGGAT 2085 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||||| | || || ||||| ||||| | ||||||| |||||| ||| || ||| Sbjct 2086 CAGCAGCGTCTGATCTTCGCCGGTAAACAGCTCGAAGATGGCCGCACTTTGGCTGACTAC 2145 Query 25176 AATATTCAAAAAG 25188 || || || |||| Sbjct 2146 AACATCCAGAAAG 2158 >seq7 Length=27187321 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||||||||| || || ||||||| |||| || ||| || Sbjct 640342 ATGCAGATCTTCGTCAAGACTTTGACGGGAAAGACCATCACTCTCGAGGTTGAGAGCTCC 640283 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 |||||||| || || || ||| || || ||||| ||||| || || || || | Sbjct 640282 GACACTATTGA--CAATGTCAAGGCGAAGATACAGGACAAGGAAGGCATCCCTCCGGATC 640225 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||| || |||||||||| || || || | || |||| |||||| | | || |||| Sbjct 640224 AGCAGAGGCTTATTTTTGCTGGTAAGCAGCTGGAGGATGGTCGCACGCTCGCTGACTACA 640165 Query 25177 ATATTCAAAAAGAATCCACGCTACA 25201 | || || || || || ||||| || Sbjct 640164 ACATCCAGAAGGAGTCGACGCTTCA 640140 >seq4 Length=50002108 Score = 87.8 bits (96), Expect = 2e-12 Identities = 137/193 (71%), Gaps = 6/193 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || || | || || || ||||||| |||| || ||||| || Sbjct 24965262 ATGCAGATCTTCGTGAAAACCCTAACGGGCAAGACCATCACTCTCGAGGTCGAGTCCTCC 24965321 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| ||||| || || |||| || | || ||||||||||| || || || || Sbjct 24965322 GACACCATCGA--CAATGTCAAAGCCAAGATCCAA-GACAAAGAAGGTATCCCTCCGGAT 24965378 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||||| | || || ||||| ||||| | ||||||| || ||| ||| || ||| Sbjct 24965379 CAGCAGCGTCTGATCTTCGCCGGTAAACAGCTCGAAGATGGCCGTACTTTGGCTGACTAC 24965438 Query 25176 AATATTCAAAAAG 25188 || || || |||| Sbjct 24965439 AACATCCAGAAAG 24965451 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/192 (70%), Gaps = 4/192 (2%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || || | ||||| || ||||||| |||| || ||||| || Sbjct 45703296 ATGCAGATCTTCGTGAAAACCCTAACCGGAAAGACCATCACCCTCGAGGTCGAGTCCTCC 45703355 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| ||||| || || ||| || ||| ||||||||||| || || || || | Sbjct 45703356 GACACCATCGA--CAATGTCAAGGCCAAGATCCAAGACAAAGAAGGTATCCCTCCGGATC 45703413 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||| | | || || ||||| ||||| | || |||| || ||| ||| || |||| Sbjct 45703414 AGCAGAGATTGATCTTCGCCGGTAAACAGCTCGAGGATGGCCGTACTTTGGCTGACTACA 45703473 Query 25177 ATATTCAAAAAG 25188 | || || |||| Sbjct 45703474 ACATCCAGAAAG 45703485 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433271618068940