Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= NC_008296.2 Length=177300 Score E Sequences producing significant alignments: (Bits) Value seq10676 612 2e-170 seq3905 237 2e-57 seq3 194 2e-44 seq3442 87.8 2e-12 >seq10676 Length=153368 Score = 612 bits (678), Expect = 2e-170 Identities = 738/999 (74%), Gaps = 6/999 (1%) Strand=Plus/Minus Query 166053 CTTCTGCGAATGGGTTACCTCTACCAACAACCGTCTTTATGTTGGTTGGTTTGGCACACT 166112 |||||| | ||| | || ||| | ||||||||||| |||| |||||||| | Sbjct 1327 CTTCTGTAACTGGATAACTAGTACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTT 1268 Query 166113 GATGATTCCAACTCTGTTGGCAGCAACCATCTGTTTCATCGTCGCTTTCGTAGCGGCACC 166172 ||||||||| || | ||| | ||||| | ||| || |||| ||| | || || || Sbjct 1267 GATGATTCCTACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCC 1208 Query 166173 TCCTGTCGATATCGATGGGATCCGTGAGCCCGTAGCAGGCTCTCTAATGTATGGTAACAA 166232 ||| || ||||| ||||| || ||||| || || | || ||||| | || || ||||| Sbjct 1207 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAA 1148 Query 166233 CATCATCTCTGGTGCTGTTGTCCC--CTCCTCCAACGCAATTGGTCTTCACTTCTATCCC 166290 || || || ||||| || | || || || || || |||||| | || || ||||| Sbjct 1147 TATTATTTCAGGTGCCATTATTCCTACTTCTGCA--GCTATTGGTTTGCATTTTTATCCG 1090 Query 166291 ATCTGGGAAGCAGCATCACTTGATGAATGGCTTTATAACGGTGGTCCTTTCCAGCTCGTA 166350 ||||||||||| ||||| ||||||||||||| || ||||||||||||| | || | Sbjct 1089 ATCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGTGGTCCTTATGAACTAATT 1030 Query 166351 GTCTTCCACTTCCTCATCGGCATCTATGCCTACATGGGTCGTGAATGGGAATTGTCTTAC 166410 || | ||||| | | || | | || ||||||||||| |||||| | || | Sbjct 1029 GTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTC 970 Query 166411 CGCCTCGGTATGCGTCCTTGGATTTGCGTAGCATACTCTGCACCTGTTGCAGCAGCATCC 166470 || || |||||||||||||||||| || ||||| || || ||||||||||| || | Sbjct 969 CGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACT 910 Query 166471 GCAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCCCTGGGT 166530 || || ||| || |||| || | |||||||| ||| ||||| | ||||| || || Sbjct 909 GCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGA 850 Query 166531 ATCAGTGGCACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTCATGCAC 166590 ||| ||| || ||||||| ||| |||| ||||| || ||||||||||| || |||||| Sbjct 849 ATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCAC 790 Query 166591 CCCTTCCATATGCTGGGTGTAGCAGGTGTATTCGGTGGGTCACTTTTCTCGGCAATGCAC 166650 || || || ||| | |||||||| ||||||||||| || || || || || ||||| Sbjct 789 CCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCAT 730 Query 166651 GGCAGTCTCGTTACTTCCTCGCTCG-TCCGTGAGACCACTGAAACTGAGTCTCAAAACTA 166709 || | | || ||||| | | | | || | || ||||| |||| ||| ||| || | Sbjct 729 GGTTCTTTGGTAACTTC-TAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGA 671 Query 166710 TGGTTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTGGCTGCTCATGGTTACTT 166769 || |||| || |||||||||||||| || |||||||| || |||||||| ||||| || Sbjct 670 AGGGTACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTT 611 Query 166770 CGGTCGCCTGATCTTCCAATACGCTTCCTTCAACAACTCTCGCTCGCTGCACTTCTTCCT 166829 || || ||||||||||||| ||| |||||||| ||||| || | || |||||| | Sbjct 610 TGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTT 551 Query 166830 CGCAGCATGGCCTGTTGTCGGTATCTGGTTTACTGCTCTTGGTGTTAGCACCATGGCATT 166889 || || ||||| || || ||||| |||||||||||| | ||| |||| || ||||| || Sbjct 550 AGCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTT 491 Query 166890 CAACCTCAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAA 166949 |||||| || |||||||| |||||||| || | | ||| |||| || ||||| | || Sbjct 490 CAACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAA 431 Query 166950 CACTTGGGCAGATGTCCTCAACCGTGCTGGTCTGGGTATGGAAGTAATGCACGAGCGTAA 167009 |||||||| ||| | | ||||||||| || ||||||||||| ||||| || ||||| Sbjct 430 TACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAA 371 Query 167010 TGCTCACAACTTCCCTCTGGATCTTGCTGCTGCTGAGTC 167048 |||||||||||||||||| || || ||||||| |||||| Sbjct 370 TGCTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAGTC 332 Score = 549 bits (608), Expect = 2e-151 Identities = 732/1016 (72%), Gaps = 6/1016 (1%) Strand=Plus/Plus Query 167300 TTTGATGTCCTGGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGA 167359 |||||| | ||||||||||| | | |||||||| || ||||| || |||||||| Sbjct 31980 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGT 32039 Query 167360 TTACTTCTTTTTCCCACTGCTTATCTGGCAATTGGTGGCTGGCTTACTGGCACGACGTTT 167419 || | || ||||| ||| ||| | || | || || ||| | || || || || ||| Sbjct 32040 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTGGGGGGTTGGTTCACAGGTACAACCTTT 32099 Query 167420 GTTACGAGCTGGTATACCCACGGGTTGGCGTCTAGTTACCTT---GAGGGTGCTAATTTT 167476 || || |||||||| || || ||||| ||||| | | || ||| |||||| Sbjct 32100 GTAACTTCATGGTATACTCATGGATTGGC---TAGTTCCTATTTAGAAGGTTGCAATTTT 32156 Query 167477 CTCACGGCAGCAGTGTCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGG 167536 | || || ||||| || ||||||||| | | | | |||||| | | |||| ||| Sbjct 32157 TTAACCGCTGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGG 32216 Query 167537 GGTCCTGAGTCTCAGGGGGATTTCATCAGGTGGTGCCAGCTTGGGGGACTCTGGGCTTTT 167596 |||||||| | || || ||||| | | ||||| || | || || || ||||||||| Sbjct 32217 GGTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTT 32276 Query 167597 GTGGCGCTCCACGGAGCCTTTGCTCTCATAGGATTTATGCTTCGGCAATTTGAGATAAGT 167656 || || |||||||| || || || | ||||| |||||| | || |||||||| | | Sbjct 32277 GTTGCTCTCCACGGTGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCT 32336 Query 167657 AGACTAGTAGGTATCCGTCCTTACAATGCGATTGCTTTTTCTGGTCCGATTGCTGTCTTT 167716 || || | || ||||| ||||| || || || |||||||| |||||||| ||| Sbjct 32337 CGATCTGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTT 32396 Query 167717 GTGTCTGTTTTTCTCATCTATCCTCTCGGACAGTCCAGTTGGTTCTTTGCACCGTCGTTT 167776 || ||||| ||||| || ||||| || || || || ||||||||||||| || ||| Sbjct 32397 GTTTCTGTCTTTCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTT 32456 Query 167777 GGTGTTGCAGCGATATTTAGATTCCTACTATTCCTACAGGGTTTCCATAACTGGACGCTC 167836 ||||| || || |||||| ||||| | || || | || || || ||||| ||||| | Sbjct 32457 GGTGTAGCGGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTG 32516 Query 167837 AACCCTTTCCATATGATGGGAGTTGCTGGTATCCTAGGCGGTGCATTGCTTTCTGCAATC 167896 ||||| || |||||||||||||| |||||| | || |||| || || | | || || Sbjct 32517 AACCCATTTCATATGATGGGAGTCGCTGGTGTACTGGGCGCGGCTCTGTTATGCGCTATT 32576 Query 167897 CATGGTGTTACAGTAGAGAATACTCTGTATGAAGATGGTGAGCAAGCAAACACTTTCAAA 167956 ||||||| ||| ||||| |||||| | | |||||||||||| ||||| || ||| Sbjct 32577 CATGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGT 32636 Query 167957 GCATTTGATACGACTCAGGAAGAGGAAACTTATTCCATGGTCACTGCTAACCGATTCTGG 168016 || ||| | | ||||| | || ||||||||||| |||||||| |||||||| || ||| Sbjct 32637 GCTTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGG 32696 Query 168017 TCTCAAATTTTTGGTATTGCTTTCAGCAATAAGCGTTGGTTGCACTTCTTTATGCTTTTC 168076 || ||||| ||||| ||||||| |||||| |||||||| || ||||||||| | || Sbjct 32697 TCACAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTT 32756 Query 168077 GTTCCTGTCATGGGACTTTGGACAAGTTCTATTGGTATCATCGGTCTCGCACTTAATCTT 168136 || || || | || | |||| ||| || |||| | ||||||| || | || || Sbjct 32757 GTACCAGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCTTTGAACCTA 32816 Query 168137 CGTGCTTATGACTTTGTGTCTCAGGAAGTTAGAGCAGCAGAGGATCCAGAGTTTGAAACT 168196 ||||| |||||||| || || |||||| | | ||||| || ||||| || ||||| ||| Sbjct 32817 CGTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACT 32876 Query 168197 TTCTATACGAAAAACATCCTCCTCAATGAAGGACTCCGTGCCTGGATGGCTCCAGTAGAC 168256 |||||||| ||||| || || | || ||||| | || || |||||||| | ||| Sbjct 32877 TTCTATACTAAAAATATTCTTTTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGAT 32936 Query 168257 CAACCACATGAAAACTTTGTATTCCCAGAAGAAGTATTGCCAAGAGGCAACGCTCT 168312 || || ||||||||| || ||||||| || || || | ||| | || |||||||| Sbjct 32937 CAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 32992 >seq3905 Length=4339 Score = 237 bits (262), Expect = 2e-57 Identities = 301/414 (73%), Gaps = 0/414 (0%) Strand=Plus/Plus Query 167585 CTCTGGGCTTTTGTGGCGCTCCACGGAGCCTTTGCTCTCATAGGATTTATGCTTCGGCAA 167644 || ||||||||||| || |||||||| || || || | ||||| |||||| | || ||| Sbjct 1156 CTGTGGGCTTTTGTTGCTCTCCACGGTGCTTTCGCATTAATAGGTTTTATGTTACGTCAA 1215 Query 167645 TTTGAGATAAGTAGACTAGTAGGTATCCGTCCTTACAATGCGATTGCTTTTTCTGGTCCG 167704 ||||| | | || || | || ||||| ||||| || || || | |||||| Sbjct 1216 TTTGAACTTGCTCGATCTGTTCAATTGCGACCTTATAATGCAATCGCATTCTTTGGTCCA 1275 Query 167705 ATTGCTGTCTTTGTGTCTGTTTTTCTCATCTATCCTCTCGGACAGTCCAGTTGGTTCTTT 167764 |||||||| ||||| ||||| ||||| || ||||| || || || || ||||||||||| Sbjct 1276 ATTGCTGTTTTTGTTTCTGTCTTTCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTT 1335 Query 167765 GCACCGTCGTTTGGTGTTGCAGCGATATTTAGATTCCTACTATTCCTACAGGGTTTCCAT 167824 || || |||||||| || | |||||| ||||| | || || | || || || ||| Sbjct 1336 GCGCCTAGTTTTGGTGTAGCGGTTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCAT 1395 Query 167825 AACTGGACGCTCAACCCTTTCCATATGATGGGAGTTGCTGGTATCCTAGGCGGTGCATTG 167884 || |||| | ||||| || |||||||||||||| |||||| | || |||| || || Sbjct 1396 AATTGGATATTGAACCCATTTCATATGATGGGAGTCGCTGGTGTACTGGGCGCGGCTCTG 1455 Query 167885 CTTTCTGCAATCCATGGTGTTACAGTAGAGAATACTCTGTATGAAGATGGTGAGCAAGCA 167944 | | || || ||||||| ||| ||||| |||||| | | |||||||||||| ||| Sbjct 1456 TTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCA 1515 Query 167945 AACACTTTCAAAGCATTTGATACGACTCAGGAAGAGGAAACTTATTCCATGGTC 167998 || || ||| || ||| | ||||| | || ||||||||||| |||||| Sbjct 1516 AATACATTCCGTGCTTTTAACCTAACTCAAGCCGAAGAAACTTATTCAATGGTC 1569 >seq3 Length=29132933 Score = 194 bits (214), Expect = 2e-44 Identities = 364/531 (69%), Gaps = 8/531 (2%) Strand=Plus/Plus Query 167330 GACCGCTTTGTCTTTGTGGGCTGGTCTGGATTACTTCTTTTTCCCACTGCTTATCTGGCA 167389 ||||||||||| ||||| || |||||||| || | || ||||| ||| ||| | | Sbjct 2931774 GACCGCTTTGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTTCCTTGTGCCTATTTCTCT 2931833 Query 167390 ATTGGTGGCTGGCTTACTGGCACGACGTTTGTTACGAGCTGGTATACCCACGGGTTGGCG 167449 | || || ||| | || || || || ||||| || |||||||| || || ||||| Sbjct 2931834 TTGGGGGGTTGGTTCACAGGTACAACTTTTGTAACTTCATGGTATACTCATGGATTGGC- 2931892 Query 167450 TCTAGTTACCTT---GAGGGTGCTAATTTTCTCACGGCAGCAGTGTCAACTCCTGCTGAC 167506 ||||| | | || ||| | | || | || | ||||| || ||||||||| | Sbjct 2931893 --TAGTTCCTATTTAGAAGGTTGCAGTCTTTTAACCGATGCAGTTTCTACTCCTGCTAAT 2931950 Query 167507 GCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGGATTTCATCAGG 167566 | | |||||| || || | || ||||||||| | || || ||||| | | Sbjct 2931951 AGTTTAACGCATTCT-TTGTTATTATTGTGGGTCCTGAAGCACAAGGAGATTTTAGTCGT 2932009 Query 167567 TGGTGCCAGCTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACGGAGCCTTTGCTCTCATA 167626 ||||| || | | || || |||| |||||| || |||||| | || || | | ||| Sbjct 2932010 TGGTGTCAATTAGACGGTCTGTGGGGTTTTGTTGCTCTCCACAGTGCTTTCGAATTAATA 2932069 Query 167627 GGATTTATGCTTCGGCAATTTGAGATAAGTAGACTAGTAGGTATCCGTCCTTACAATGCG 167686 | |||||| | || |||||||| | | || || | || ||||| ||||| Sbjct 2932070 AGTTTTATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAATTGCGACCTTATAATGCA 2932129 Query 167687 ATTGCTTTTTCTGGTCCGATTGCTGTCTTTGTGTCTGTTTTTCTCATCTATCCTCTCGGA 167746 || | || |||||||| |||||||| ||| | ||||| ||||| || ||||||| || Sbjct 2932130 ATAACATTCTCTGGTCCAATTGCTGTTTTTATTTCTGTCTTTCTAATTTATCCTCA-GGT 2932188 Query 167747 CAGTCCAGTTGGTTCTTTGCACCGTCGTTTGGTGTTGCAGCGATATTTAGATTCCTACTA 167806 || || |||||||||||||||| |||||||| || || |||||| | ||| | | Sbjct 2932189 CAATCTGGTTGGTTCTTTGCACCTAGTTTTGGTGTAGCGGCTATATTTCGGTTCATCATC 2932248 Query 167807 TTCCTACAGGGTTTCCATAACTGGACGCTCAACCCTTTCCATATGATGGGA 167857 || | || || || ||||| |||| | |||||| | |||||||||||| Sbjct 2932249 TTTTTCCAAGGGTTTCATAATTGGAAATTGAACCCTCTTCATATGATGGGA 2932299 >seq3442 Length=4740 Score = 87.8 bits (96), Expect = 2e-12 Identities = 72/88 (82%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 166724 GTCAAGAAGAAGAGACCTACAACATCGTGGCTGCTCATGGTTACTTCGGTCGCCTGATCT 166783 |||||||| |||| || |||||||| || |||||||| ||||| || || || |||||| Sbjct 4277 GTCAAGAAAAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGGCCGATTGATCT 4336 Query 166784 TCCAATACGCTTCCTTCAACAACTCTCG 166811 ||||||| ||| |||||||| ||||| Sbjct 4337 TCCAATATGCTAGTTTCAACAATTCTCG 4364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 567156302889600