Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq7 89.7 4e-13 >seq7 Length=27187321 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | || || | || ||||||||||| || |||| ||| | | Sbjct 639886 ATGCAGATTTTTGTGAAGACCCTCACTGGCAAAACCATCACTTTGGAGGTGGAGAGCTCT 639827 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || ||| | | | | ||| ||| ||| || ||||||||| | || | ||||| Sbjct 639826 GACACGATCGATAACGTCAAGGCAAAGATTCAGGACAAAGAGGGTATCCCACCAGACCAA 639767 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || ||||||||||| || || || || |||||||| | ||| | || |||||||| Sbjct 639766 CAAAGACTTATCTTCGCCGGGAAGCAGCTAGAAGACGGACGTACTCTTGCGGATTACAAC 639707 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 |||||||| || ||||| || ||| | || | ||| | || || || Sbjct 639706 ATTCAGAAAGAGTCTACGCTGCATCTTGTGCTTCGTCTCCGTGGTGG 639660 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358078203039304